Ggra10219.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10219.t1
Unique Name	Ggra10219.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	497

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000016_pilon	contig	tig00000016_pilon:124028..125518 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	109871.XP_006679675.1
PFAMs	MFS_1,Sugar_tr
Max annot lvl	4751\|Fungi
Evalue	1.94e-07
EggNOG OGs	COG0477@1\|root,2QWCG@2759\|Eukaryota,3A20X@33154\|Opisthokonta,3PBKN@4751\|Fungi
Description	Allomyces macrogynus ATCC 38327
COG category	EGP

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10219	Ggra10219	Gracilaria gracilis GNS1m male	gene	tig00000016_pilon 124028..125518 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10219.t1.start1	Ggra10219.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000016_pilon 124028..124030 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10219.t1.CDS1	Ggra10219.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000016_pilon 124028..125518 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10219.t1.exon1	Ggra10219.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000016_pilon 124028..125518 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10219.t1.stop1	Ggra10219.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000016_pilon 125516..125518 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10219.t1	Ggra10219.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000016_pilon 124028..125518 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000016_pilon:124028..125518+
coding sequence from alignment at tig00000016_pilon:124028..125518+

mRNA sequence

>Ggra10219.t1 ID=Ggra10219.t1|Name=Ggra10219.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=497bp
MNGDRRAWRFLVPVPACCLLQAIFGLLYATGVFVALLDRPQYTLSIGVAG
FFTSVGITVAGVAMNKLVPRDSAQLAPVYVTLFGAAALAAQMLCALALAL
DHAPLLFFGAALYGMGCGCIYVASVDVLQAWVPEARGTITGVGMLCGAMG
SLFGIEAFRALAASLSSPVHAIALVGFLSAALTFAAAPMVQRPPAGWHPT
DELYHSQQSLPLLSSTSARQSYCTLSVKDVLVDPSFYLLVVAFAGTVGPG
FGIVLAFQEMAAQLYGADLQLANALFFWVTFSGIAGRLLSGIGVDALDDA
GERHVGMLGAKRTNKLLLAAQLVALLTMPIVVRAGSIYGFMVAAAVVYIT
FSGGPVVTTCLVGGVFDQNNASLAFSLIAISIGLGDVFFSWVIARCSEAS
MLEAGSHPALHVNDYNLFIVCSAIWSVAGYVATHYIRRCKALRDDVDTSR
GRGISISADNVAISMGDVMAPFERAARRSADETTFLRSHVDMCCET*

spliced messenger RNA

>Ggra10219.t1 ID=Ggra10219.t1|Name=Ggra10219.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1491bp|location=Sequence derived from alignment at tig00000016_pilon:124028..125518+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGGCGACCGGCGTGCGTGGCGATTCTTGGTGCCGGTGCCGGCGTG
CTGCTTGCTGCAGGCCATCTTCGGTCTGCTCTATGCCACCGGCGTGTTTG
TCGCGCTGCTGGACCGCCCGCAGTACACGCTTTCCATCGGCGTGGCGGGC
TTCTTCACCAGCGTGGGCATCACCGTCGCGGGTGTCGCCATGAACAAGCT
CGTGCCGCGCGACAGCGCGCAGCTGGCGCCCGTCTACGTCACGCTGTTCG
GCGCCGCCGCCTTGGCCGCGCAGATGCTTTGCGCGCTGGCGTTGGCGCTT
GATCATGCCCCGCTGCTGTTCTTTGGCGCCGCCTTGTATGGCATGGGCTG
CGGATGCATTTACGTTGCGAGCGTCGATGTCTTGCAGGCTTGGGTGCCCG
AGGCGCGCGGAACCATCACGGGCGTGGGCATGTTGTGCGGTGCAATGGGC
TCGCTGTTCGGTATCGAAGCCTTTCGTGCCTTGGCTGCTTCGCTGAGCTC
GCCTGTGCACGCTATTGCCTTGGTTGGCTTTCTGTCCGCCGCTTTGACCT
TCGCCGCTGCTCCTATGGTGCAGCGTCCGCCCGCTGGATGGCATCCCACT
GATGAGTTGTATCACTCGCAGCAGAGTTTGCCGTTACTGTCGTCCACAAG
CGCGCGTCAATCGTATTGTACTTTGAGCGTCAAAGACGTTCTGGTAGATC
CGTCGTTTTATCTGCTCGTTGTGGCGTTTGCTGGCACCGTTGGTCCTGGT
TTTGGTATCGTTCTTGCCTTTCAGGAAATGGCCGCTCAGTTGTATGGCGC
TGACCTCCAGCTGGCCAACGCGCTGTTCTTCTGGGTCACCTTCAGTGGCA
TTGCGGGTCGCTTGCTTTCTGGCATTGGCGTGGATGCGCTGGATGATGCT
GGTGAGCGCCATGTCGGAATGCTAGGCGCCAAGAGGACTAACAAACTCTT
GCTGGCAGCTCAGCTTGTGGCGCTTCTAACCATGCCCATCGTTGTCAGAG
CTGGTAGTATATATGGCTTTATGGTTGCGGCTGCCGTCGTTTATATCACG
TTTAGTGGCGGACCGGTTGTCACTACATGCCTTGTAGGCGGCGTGTTTGA
TCAGAACAATGCGAGTTTGGCGTTTTCTTTGATAGCCATCAGCATTGGGC
TAGGAGATGTGTTTTTCTCGTGGGTTATTGCTCGTTGTAGTGAAGCTTCT
ATGTTGGAGGCCGGTTCGCATCCTGCCCTTCACGTCAACGATTACAATTT
GTTTATTGTTTGCAGTGCAATATGGTCCGTTGCTGGATATGTCGCTACCC
ATTACATTCGCAGATGCAAAGCCTTGCGAGATGATGTTGACACTTCTCGC
GGAAGGGGAATATCTATTTCGGCGGATAATGTCGCCATTTCAATGGGGGA
CGTTATGGCGCCGTTCGAAAGGGCCGCACGACGTTCTGCGGATGAGACGA
CGTTCCTTAGATCCCATGTTGATATGTGCTGTGAAACGTGA

protein sequence of Ggra10219.t1

>Ggra10219.t1 ID=Ggra10219.t1|Name=Ggra10219.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=497bp
MNGDRRAWRFLVPVPACCLLQAIFGLLYATGVFVALLDRPQYTLSIGVAG
FFTSVGITVAGVAMNKLVPRDSAQLAPVYVTLFGAAALAAQMLCALALAL
DHAPLLFFGAALYGMGCGCIYVASVDVLQAWVPEARGTITGVGMLCGAMG
SLFGIEAFRALAASLSSPVHAIALVGFLSAALTFAAAPMVQRPPAGWHPT
DELYHSQQSLPLLSSTSARQSYCTLSVKDVLVDPSFYLLVVAFAGTVGPG
FGIVLAFQEMAAQLYGADLQLANALFFWVTFSGIAGRLLSGIGVDALDDA
GERHVGMLGAKRTNKLLLAAQLVALLTMPIVVRAGSIYGFMVAAAVVYIT
FSGGPVVTTCLVGGVFDQNNASLAFSLIAISIGLGDVFFSWVIARCSEAS
MLEAGSHPALHVNDYNLFIVCSAIWSVAGYVATHYIRRCKALRDDVDTSR
GRGISISADNVAISMGDVMAPFERAARRSADETTFLRSHVDMCCET*

mRNA from alignment at tig00000016_pilon:124028..125518+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10219.t1 ID=Ggra10219.t1|Name=Ggra10219.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1491bp|location=Sequence derived from alignment at tig00000016_pilon:124028..125518+ (Gracilaria gracilis GNS1m male)
ATGAACGGCGACCGGCGTGCGTGGCGATTCTTGGTGCCGGTGCCGGCGTG
CTGCTTGCTGCAGGCCATCTTCGGTCTGCTCTATGCCACCGGCGTGTTTG
TCGCGCTGCTGGACCGCCCGCAGTACACGCTTTCCATCGGCGTGGCGGGC
TTCTTCACCAGCGTGGGCATCACCGTCGCGGGTGTCGCCATGAACAAGCT
CGTGCCGCGCGACAGCGCGCAGCTGGCGCCCGTCTACGTCACGCTGTTCG
GCGCCGCCGCCTTGGCCGCGCAGATGCTTTGCGCGCTGGCGTTGGCGCTT
GATCATGCCCCGCTGCTGTTCTTTGGCGCCGCCTTGTATGGCATGGGCTG
CGGATGCATTTACGTTGCGAGCGTCGATGTCTTGCAGGCTTGGGTGCCCG
AGGCGCGCGGAACCATCACGGGCGTGGGCATGTTGTGCGGTGCAATGGGC
TCGCTGTTCGGTATCGAAGCCTTTCGTGCCTTGGCTGCTTCGCTGAGCTC
GCCTGTGCACGCTATTGCCTTGGTTGGCTTTCTGTCCGCCGCTTTGACCT
TCGCCGCTGCTCCTATGGTGCAGCGTCCGCCCGCTGGATGGCATCCCACT
GATGAGTTGTATCACTCGCAGCAGAGTTTGCCGTTACTGTCGTCCACAAG
CGCGCGTCAATCGTATTGTACTTTGAGCGTCAAAGACGTTCTGGTAGATC
CGTCGTTTTATCTGCTCGTTGTGGCGTTTGCTGGCACCGTTGGTCCTGGT
TTTGGTATCGTTCTTGCCTTTCAGGAAATGGCCGCTCAGTTGTATGGCGC
TGACCTCCAGCTGGCCAACGCGCTGTTCTTCTGGGTCACCTTCAGTGGCA
TTGCGGGTCGCTTGCTTTCTGGCATTGGCGTGGATGCGCTGGATGATGCT
GGTGAGCGCCATGTCGGAATGCTAGGCGCCAAGAGGACTAACAAACTCTT
GCTGGCAGCTCAGCTTGTGGCGCTTCTAACCATGCCCATCGTTGTCAGAG
CTGGTAGTATATATGGCTTTATGGTTGCGGCTGCCGTCGTTTATATCACG
TTTAGTGGCGGACCGGTTGTCACTACATGCCTTGTAGGCGGCGTGTTTGA
TCAGAACAATGCGAGTTTGGCGTTTTCTTTGATAGCCATCAGCATTGGGC
TAGGAGATGTGTTTTTCTCGTGGGTTATTGCTCGTTGTAGTGAAGCTTCT
ATGTTGGAGGCCGGTTCGCATCCTGCCCTTCACGTCAACGATTACAATTT
GTTTATTGTTTGCAGTGCAATATGGTCCGTTGCTGGATATGTCGCTACCC
ATTACATTCGCAGATGCAAAGCCTTGCGAGATGATGTTGACACTTCTCGC
GGAAGGGGAATATCTATTTCGGCGGATAATGTCGCCATTTCAATGGGGGA
CGTTATGGCGCCGTTCGAAAGGGCCGCACGACGTTCTGCGGATGAGACGA
CGTTCCTTAGATCCCATGTTGATATGTGCTGTGAAACGTGA

Coding sequence (CDS) from alignment at tig00000016_pilon:124028..125518+

>Ggra10219.t1 ID=Ggra10219.t1|Name=Ggra10219.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1491bp|location=Sequence derived from alignment at tig00000016_pilon:124028..125518+ (Gracilaria gracilis GNS1m male)
ATGAACGGCGACCGGCGTGCGTGGCGATTCTTGGTGCCGGTGCCGGCGTG
CTGCTTGCTGCAGGCCATCTTCGGTCTGCTCTATGCCACCGGCGTGTTTG
TCGCGCTGCTGGACCGCCCGCAGTACACGCTTTCCATCGGCGTGGCGGGC
TTCTTCACCAGCGTGGGCATCACCGTCGCGGGTGTCGCCATGAACAAGCT
CGTGCCGCGCGACAGCGCGCAGCTGGCGCCCGTCTACGTCACGCTGTTCG
GCGCCGCCGCCTTGGCCGCGCAGATGCTTTGCGCGCTGGCGTTGGCGCTT
GATCATGCCCCGCTGCTGTTCTTTGGCGCCGCCTTGTATGGCATGGGCTG
CGGATGCATTTACGTTGCGAGCGTCGATGTCTTGCAGGCTTGGGTGCCCG
AGGCGCGCGGAACCATCACGGGCGTGGGCATGTTGTGCGGTGCAATGGGC
TCGCTGTTCGGTATCGAAGCCTTTCGTGCCTTGGCTGCTTCGCTGAGCTC
GCCTGTGCACGCTATTGCCTTGGTTGGCTTTCTGTCCGCCGCTTTGACCT
TCGCCGCTGCTCCTATGGTGCAGCGTCCGCCCGCTGGATGGCATCCCACT
GATGAGTTGTATCACTCGCAGCAGAGTTTGCCGTTACTGTCGTCCACAAG
CGCGCGTCAATCGTATTGTACTTTGAGCGTCAAAGACGTTCTGGTAGATC
CGTCGTTTTATCTGCTCGTTGTGGCGTTTGCTGGCACCGTTGGTCCTGGT
TTTGGTATCGTTCTTGCCTTTCAGGAAATGGCCGCTCAGTTGTATGGCGC
TGACCTCCAGCTGGCCAACGCGCTGTTCTTCTGGGTCACCTTCAGTGGCA
TTGCGGGTCGCTTGCTTTCTGGCATTGGCGTGGATGCGCTGGATGATGCT
GGTGAGCGCCATGTCGGAATGCTAGGCGCCAAGAGGACTAACAAACTCTT
GCTGGCAGCTCAGCTTGTGGCGCTTCTAACCATGCCCATCGTTGTCAGAG
CTGGTAGTATATATGGCTTTATGGTTGCGGCTGCCGTCGTTTATATCACG
TTTAGTGGCGGACCGGTTGTCACTACATGCCTTGTAGGCGGCGTGTTTGA
TCAGAACAATGCGAGTTTGGCGTTTTCTTTGATAGCCATCAGCATTGGGC
TAGGAGATGTGTTTTTCTCGTGGGTTATTGCTCGTTGTAGTGAAGCTTCT
ATGTTGGAGGCCGGTTCGCATCCTGCCCTTCACGTCAACGATTACAATTT
GTTTATTGTTTGCAGTGCAATATGGTCCGTTGCTGGATATGTCGCTACCC
ATTACATTCGCAGATGCAAAGCCTTGCGAGATGATGTTGACACTTCTCGC
GGAAGGGGAATATCTATTTCGGCGGATAATGTCGCCATTTCAATGGGGGA
CGTTATGGCGCCGTTCGAAAGGGCCGCACGACGTTCTGCGGATGAGACGA
CGTTCCTTAGATCCCATGTTGATATGTGCTGTGAAACGTGA