Ggra11013.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra11013.t1
Unique Name	Ggra11013.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	389

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000224_pilon	contig	tig00000224_pilon:44770..45936 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	111780.Sta7437_4041
PFAMs	Oxidored_FMN
Max annot lvl	1117\|Cyanobacteria
KEGG rclass	RC00250
KEGG ko	ko:K10680
KEGG Reaction	R08014,R08017,R08042
KEGG Pathway	ko00633,ko01120,map00633,map01120
Evalue	2.15e-126
EggNOG OGs	COG1902@1\|root,COG1902@2\|Bacteria,1FZYT@1117\|Cyanobacteria,3VIN3@52604\|Pleurocapsales
Description	NADH:flavin oxidoreductase / NADH oxidase family
COG category	C
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra11013	Ggra11013	Gracilaria gracilis GNS1m male	gene	tig00000224_pilon 44770..45936 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11013.t1.start1	Ggra11013.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000224_pilon 44770..44772 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11013.t1.CDS1	Ggra11013.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000224_pilon 44770..45936 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11013.t1.exon1	Ggra11013.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000224_pilon 44770..45936 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11013.t1.stop1	Ggra11013.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000224_pilon 45934..45936 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11013.t1	Ggra11013.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000224_pilon 44770..45936 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000224_pilon:44770..45936+
coding sequence from alignment at tig00000224_pilon:44770..45936+

mRNA sequence

>Ggra11013.t1 ID=Ggra11013.t1|Name=Ggra11013.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=389bp
MTKATTNYPTLLSPLRMGSLTLRNRIVMAPMSRGRAGPKMTANALIAEYY
AQRASAGLIITEGTHTSKMGRGFFHTPEIFSEEHVAGWRLTTDRVHELGG
VIFCQLWHAGRAGHSSFRDGEPEYEGKDKLCVAPSAVMRASESGKQMYTP
GGAVVDVETPRAMTLEEIKELPQEFANCARLAKEAGFDGVEIHCGNGFLL
DTFLQSSTNKRTDEYGGSFENRFRIVDEVLKAVFRHIEPDRVAIRVAPNG
VYNGMGSEDNREAFTYYFKRLTDYGLAYVHAMDGLGFGFHGLGEPMLLKE
MKAAYGGVMMGNCDYTAETAEECLSKGEGDLISFGRPFLRNPDLVEKFEN
GEELRPCLPHQYWYSAVDQVWTTEGFTDFSVLEEDQAK*

spliced messenger RNA

>Ggra11013.t1 ID=Ggra11013.t1|Name=Ggra11013.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1167bp|location=Sequence derived from alignment at tig00000224_pilon:44770..45936+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGAAGGCCACCACCAACTACCCCACGCTGCTGTCGCCGCTGCGCAT
GGGCTCGCTCACGCTTCGCAACCGCATCGTCATGGCGCCCATGTCGCGCG
GTCGCGCCGGCCCCAAGATGACAGCCAACGCGCTCATCGCTGAGTACTAC
GCGCAGCGCGCCTCCGCCGGCCTCATCATCACCGAGGGCACGCACACCTC
TAAGATGGGGCGCGGCTTCTTCCACACGCCCGAGATCTTCTCCGAAGAGC
ACGTCGCGGGCTGGCGGCTCACCACTGACCGCGTGCACGAGCTCGGCGGC
GTCATTTTCTGTCAGTTGTGGCACGCTGGACGCGCGGGTCACTCTAGCTT
CCGCGACGGCGAGCCGGAGTATGAGGGTAAGGACAAGCTCTGTGTGGCTC
CGAGTGCCGTGATGAGAGCTAGTGAGAGCGGCAAGCAGATGTACACTCCT
GGCGGCGCTGTTGTGGATGTTGAGACGCCGCGTGCAATGACGCTGGAAGA
GATTAAGGAGTTGCCGCAGGAGTTTGCCAATTGCGCGCGTCTCGCGAAGG
AGGCTGGATTTGATGGCGTGGAGATTCATTGCGGCAACGGGTTCCTGTTG
GACACTTTCTTGCAGAGCAGCACCAACAAGAGGACTGATGAGTATGGCGG
CTCCTTTGAGAATCGCTTCAGAATTGTGGATGAGGTGTTGAAGGCTGTGT
TCCGTCATATCGAGCCCGATCGTGTTGCTATTCGTGTCGCGCCCAATGGC
GTTTACAACGGCATGGGAAGTGAGGACAATCGTGAAGCGTTTACATACTA
CTTCAAGAGGTTGACTGACTACGGTCTGGCGTACGTGCATGCGATGGACG
GACTTGGGTTTGGTTTCCATGGCCTCGGCGAACCCATGTTGCTCAAGGAG
ATGAAGGCGGCGTATGGCGGCGTGATGATGGGCAACTGTGACTACACGGC
CGAGACCGCGGAGGAGTGCTTGTCTAAGGGCGAGGGTGACTTGATCAGCT
TCGGGCGCCCGTTTTTGAGAAACCCAGATCTGGTGGAGAAGTTTGAGAAC
GGCGAAGAACTTCGACCGTGCTTGCCTCACCAGTACTGGTACAGCGCCGT
TGATCAGGTTTGGACCACTGAGGGCTTCACCGACTTCAGTGTCTTGGAAG
AAGACCAAGCCAAGTAG

protein sequence of Ggra11013.t1

>Ggra11013.t1 ID=Ggra11013.t1|Name=Ggra11013.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=389bp
MTKATTNYPTLLSPLRMGSLTLRNRIVMAPMSRGRAGPKMTANALIAEYY
AQRASAGLIITEGTHTSKMGRGFFHTPEIFSEEHVAGWRLTTDRVHELGG
VIFCQLWHAGRAGHSSFRDGEPEYEGKDKLCVAPSAVMRASESGKQMYTP
GGAVVDVETPRAMTLEEIKELPQEFANCARLAKEAGFDGVEIHCGNGFLL
DTFLQSSTNKRTDEYGGSFENRFRIVDEVLKAVFRHIEPDRVAIRVAPNG
VYNGMGSEDNREAFTYYFKRLTDYGLAYVHAMDGLGFGFHGLGEPMLLKE
MKAAYGGVMMGNCDYTAETAEECLSKGEGDLISFGRPFLRNPDLVEKFEN
GEELRPCLPHQYWYSAVDQVWTTEGFTDFSVLEEDQAK*

mRNA from alignment at tig00000224_pilon:44770..45936+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra11013.t1 ID=Ggra11013.t1|Name=Ggra11013.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1167bp|location=Sequence derived from alignment at tig00000224_pilon:44770..45936+ (Gracilaria gracilis GNS1m male)
ATGACGAAGGCCACCACCAACTACCCCACGCTGCTGTCGCCGCTGCGCAT
GGGCTCGCTCACGCTTCGCAACCGCATCGTCATGGCGCCCATGTCGCGCG
GTCGCGCCGGCCCCAAGATGACAGCCAACGCGCTCATCGCTGAGTACTAC
GCGCAGCGCGCCTCCGCCGGCCTCATCATCACCGAGGGCACGCACACCTC
TAAGATGGGGCGCGGCTTCTTCCACACGCCCGAGATCTTCTCCGAAGAGC
ACGTCGCGGGCTGGCGGCTCACCACTGACCGCGTGCACGAGCTCGGCGGC
GTCATTTTCTGTCAGTTGTGGCACGCTGGACGCGCGGGTCACTCTAGCTT
CCGCGACGGCGAGCCGGAGTATGAGGGTAAGGACAAGCTCTGTGTGGCTC
CGAGTGCCGTGATGAGAGCTAGTGAGAGCGGCAAGCAGATGTACACTCCT
GGCGGCGCTGTTGTGGATGTTGAGACGCCGCGTGCAATGACGCTGGAAGA
GATTAAGGAGTTGCCGCAGGAGTTTGCCAATTGCGCGCGTCTCGCGAAGG
AGGCTGGATTTGATGGCGTGGAGATTCATTGCGGCAACGGGTTCCTGTTG
GACACTTTCTTGCAGAGCAGCACCAACAAGAGGACTGATGAGTATGGCGG
CTCCTTTGAGAATCGCTTCAGAATTGTGGATGAGGTGTTGAAGGCTGTGT
TCCGTCATATCGAGCCCGATCGTGTTGCTATTCGTGTCGCGCCCAATGGC
GTTTACAACGGCATGGGAAGTGAGGACAATCGTGAAGCGTTTACATACTA
CTTCAAGAGGTTGACTGACTACGGTCTGGCGTACGTGCATGCGATGGACG
GACTTGGGTTTGGTTTCCATGGCCTCGGCGAACCCATGTTGCTCAAGGAG
ATGAAGGCGGCGTATGGCGGCGTGATGATGGGCAACTGTGACTACACGGC
CGAGACCGCGGAGGAGTGCTTGTCTAAGGGCGAGGGTGACTTGATCAGCT
TCGGGCGCCCGTTTTTGAGAAACCCAGATCTGGTGGAGAAGTTTGAGAAC
GGCGAAGAACTTCGACCGTGCTTGCCTCACCAGTACTGGTACAGCGCCGT
TGATCAGGTTTGGACCACTGAGGGCTTCACCGACTTCAGTGTCTTGGAAG
AAGACCAAGCCAAGTAG

Coding sequence (CDS) from alignment at tig00000224_pilon:44770..45936+

>Ggra11013.t1 ID=Ggra11013.t1|Name=Ggra11013.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1167bp|location=Sequence derived from alignment at tig00000224_pilon:44770..45936+ (Gracilaria gracilis GNS1m male)
ATGACGAAGGCCACCACCAACTACCCCACGCTGCTGTCGCCGCTGCGCAT
GGGCTCGCTCACGCTTCGCAACCGCATCGTCATGGCGCCCATGTCGCGCG
GTCGCGCCGGCCCCAAGATGACAGCCAACGCGCTCATCGCTGAGTACTAC
GCGCAGCGCGCCTCCGCCGGCCTCATCATCACCGAGGGCACGCACACCTC
TAAGATGGGGCGCGGCTTCTTCCACACGCCCGAGATCTTCTCCGAAGAGC
ACGTCGCGGGCTGGCGGCTCACCACTGACCGCGTGCACGAGCTCGGCGGC
GTCATTTTCTGTCAGTTGTGGCACGCTGGACGCGCGGGTCACTCTAGCTT
CCGCGACGGCGAGCCGGAGTATGAGGGTAAGGACAAGCTCTGTGTGGCTC
CGAGTGCCGTGATGAGAGCTAGTGAGAGCGGCAAGCAGATGTACACTCCT
GGCGGCGCTGTTGTGGATGTTGAGACGCCGCGTGCAATGACGCTGGAAGA
GATTAAGGAGTTGCCGCAGGAGTTTGCCAATTGCGCGCGTCTCGCGAAGG
AGGCTGGATTTGATGGCGTGGAGATTCATTGCGGCAACGGGTTCCTGTTG
GACACTTTCTTGCAGAGCAGCACCAACAAGAGGACTGATGAGTATGGCGG
CTCCTTTGAGAATCGCTTCAGAATTGTGGATGAGGTGTTGAAGGCTGTGT
TCCGTCATATCGAGCCCGATCGTGTTGCTATTCGTGTCGCGCCCAATGGC
GTTTACAACGGCATGGGAAGTGAGGACAATCGTGAAGCGTTTACATACTA
CTTCAAGAGGTTGACTGACTACGGTCTGGCGTACGTGCATGCGATGGACG
GACTTGGGTTTGGTTTCCATGGCCTCGGCGAACCCATGTTGCTCAAGGAG
ATGAAGGCGGCGTATGGCGGCGTGATGATGGGCAACTGTGACTACACGGC
CGAGACCGCGGAGGAGTGCTTGTCTAAGGGCGAGGGTGACTTGATCAGCT
TCGGGCGCCCGTTTTTGAGAAACCCAGATCTGGTGGAGAAGTTTGAGAAC
GGCGAAGAACTTCGACCGTGCTTGCCTCACCAGTACTGGTACAGCGCCGT
TGATCAGGTTTGGACCACTGAGGGCTTCACCGACTTCAGTGTCTTGGAAG
AAGACCAAGCCAAGTAG