Ggra10228.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra10228.t1
Unique NameGgra10228.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length116
Homology
BLAST of Ggra10228.t1 vs. uniprot
Match: A0A2V3J738 (U7 snRNA-associated Sm-like protein LSm10 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J738_9FLOR)

HSP 1 Score: 92.4 bits (228), Expect = 3.950e-22
Identity = 51/103 (49.51%), Postives = 70/103 (67.96%), Query Frame = 0
Query:    1 MSRKNEATSLDFLLQALCGRKLHLELRNNVHVKGMLDSVDANMNVTISNASYT-------TPTRQHAKTTAPLSFDLVYIAARHITFVHIPEDVNVWETMEIH 96
            M    E T+L F ++ALCGR L  ELRN V V+G L+SVD NMNVTI++A +        T  R++    A + F+L+Y+A+RHITF+ IP+DVNV ETM+I+
Sbjct:    1 MGSSTEQTTLVFFIKALCGRNLRFELRNGVCVEGELESVDQNMNVTIAHALWNCGQLGSLTKDRENV---ASVCFELLYVASRHITFIQIPDDVNVSETMDIY 100          
BLAST of Ggra10228.t1 vs. uniprot
Match: H3B829 (Sm domain-containing protein n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=H3B829_LATCH)

HSP 1 Score: 60.5 bits (145), Expect = 2.520e-9
Identity = 34/103 (33.01%), Postives = 60/103 (58.25%), Query Frame = 0
Query:    9 SLDFLLQALCGRKLHLELRNNVHVKGMLDSVDANMNVTISNASYTTPTRQHAKTTAPLSFDLVYIAARHITFVHIPEDVNVWETMEIHTKRLEAVKYASSGGK 111
            SL  LLQ L GR   ++L++   V+G + +VDA MN+ +S  +YT    Q  +       +  ++  R++ +VHIP+DVN+ ET+E   +++  V++  + GK
Sbjct:   23 SLIILLQGLHGRVSTVDLKDESGVRGRIINVDAFMNIRLSEVTYTDRNGQSHQ------LEDFFVTGRNVRYVHIPQDVNIIETIEAQLQKIHRVRHFGAQGK 119          
BLAST of Ggra10228.t1 vs. uniprot
Match: U7 snRNA-associated Sm-like protein LSm10 isoform X1 n=2 Tax=Eptesicus fuscus TaxID=29078 RepID=UPI00101AA165 (U7 snRNA-associated Sm-like protein LSm10 isoform X1 n=2 Tax=Eptesicus fuscus TaxID=29078 RepID=UPI00101AA165)

HSP 1 Score: 59.7 bits (143), Expect = 1.120e-8
Identity = 35/106 (33.02%), Postives = 63/106 (59.43%), Query Frame = 0
Query:    9 SLDFLLQALCGRKLHLELRNNVHVKGMLDSVDANMNVTISNASYTTPTRQHAKTTAPLSFDLVYIAARHITFVHIPEDVNVWETMEIHTKRLEAVKYASSGGKRRK 114
            SL  LLQ L G+   ++LR+    +G +++VDA MN+ ++N +YT    + A+       D +++  R++ +VHIP+DVN+ ET+E   + +  V+   S G+ R+
Sbjct:   66 SLIILLQGLQGQVTTVDLRDESVARGRVENVDAFMNIRLANVTYTDRWGRQAE------LDDLFVTGRNVRYVHIPDDVNITETIERQLQIIHRVRNFGSLGQGRR 165          
BLAST of Ggra10228.t1 vs. uniprot
Match: U7 snRNA-associated Sm-like protein LSm10 n=1 Tax=Rhipicephalus sanguineus TaxID=34632 RepID=UPI0018934FEE (U7 snRNA-associated Sm-like protein LSm10 n=1 Tax=Rhipicephalus sanguineus TaxID=34632 RepID=UPI0018934FEE)

HSP 1 Score: 58.9 bits (141), Expect = 1.170e-8
Identity = 31/93 (33.33%), Postives = 55/93 (59.14%), Query Frame = 0
Query:    7 ATSLDFLLQALCGRKLHLELRNNVHVKGMLDSVDANMNVTISNASYTTPTRQHAKTTAPLSFDLVYIAARHITFVHIPEDVNVWETMEIHTKR 99
            A SL  +LQ L GR+  +ELRN + V G ++SVDA MNV +SNA+   P  +        ++   ++  R + ++HIP+D+++  ++++   R
Sbjct:   11 AKSLVLMLQTLRGRQTTIELRNELSVWGTVESVDAFMNVDVSNATVVGPNGEE-------NYASFFVQGRQVRYIHIPDDIDMAASLQLQDTR 96          
BLAST of Ggra10228.t1 vs. uniprot
Match: A0A672HLG1 (Organic solute carrier partner 1a n=2 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672HLG1_SALFA)

HSP 1 Score: 58.2 bits (139), Expect = 1.590e-8
Identity = 41/106 (38.68%), Postives = 61/106 (57.55%), Query Frame = 0
Query:    9 SLDFLLQALCGRKLHLELRNNVHVKGMLDSVDANMNVTISNASYTTPTRQHAKTTAPLSFDLVYIAARHITFVHIPEDVNVWETMEIHTKRLEAVK-YASSGGKRR 113
            SL  LLQ L G    +ELRN    +G L SVDA MNV + +  Y    R  A  +A L  DL ++  R++ +VHIP+DV++ ET++    ++  V+ + S GG R+
Sbjct:   15 SLVVLLQGLQGHVTTVELRNESAARGRLLSVDAFMNVRLEDVLY----RDRAGRSARLK-DL-FVTGRNVRYVHIPDDVDIMETIQSQLAKIHRVRNFGSEGGGRK 114          
BLAST of Ggra10228.t1 vs. uniprot
Match: A0A6M2CNV9 (Putative u6 snrna-associated sm-like protein lsm2 ovary overexpressed n=1 Tax=Rhipicephalus microplus TaxID=6941 RepID=A0A6M2CNV9_RHIMP)

HSP 1 Score: 57.0 bits (136), Expect = 3.270e-8
Identity = 30/93 (32.26%), Postives = 57/93 (61.29%), Query Frame = 0
Query:    7 ATSLDFLLQALCGRKLHLELRNNVHVKGMLDSVDANMNVTISNASYTTPTRQHAKTTAPLSFDLVYIAARHITFVHIPEDVNVWETMEIHTKR 99
            A SL  +LQ+L GR+  +ELRN + V G ++SVDA MNV +S+A+   P+ +        ++   ++  R + ++HIP+D+++  ++++   R
Sbjct:   11 AKSLVLMLQSLRGRQTTIELRNELSVWGTVESVDAFMNVDLSDATVVGPSGEK-------NYASFFVQGRQVRYIHIPDDIDMAASLQLQDTR 96          
BLAST of Ggra10228.t1 vs. uniprot
Match: F1Q940 (Organic solute carrier partner 1a n=2 Tax=Danio rerio TaxID=7955 RepID=F1Q940_DANRE)

HSP 1 Score: 57.4 bits (137), Expect = 4.050e-8
Identity = 35/105 (33.33%), Postives = 60/105 (57.14%), Query Frame = 0
Query:    9 SLDFLLQALCGRKLHLELRNNVHVKGMLDSVDANMNVTISNASYTTPTRQHAKTTAPLSFDLVYIAARHITFVHIPEDVNVWETMEIHTKRLEAVKYASSGGKRR 113
            SL  LLQ L G+   ++LR+    +G + +VDA MN+ + N  Y    R+  K+    S D ++I  R++ +VHIP+ +N+ ET+E    ++  V+   +GG R+
Sbjct:   16 SLVILLQGLHGQVTTVDLRDESTARGRVINVDAFMNIRLENVLYRD--RRGRKS----SMDDLFITGRNVRYVHIPDQINIIETIEAQLSKIHRVRNFGAGGGRK 114          
BLAST of Ggra10228.t1 vs. uniprot
Match: L7M216 (Sm domain-containing protein n=4 Tax=Rhipicephalus TaxID=426455 RepID=L7M216_RHIPC)

HSP 1 Score: 57.4 bits (137), Expect = 4.660e-8
Identity = 30/93 (32.26%), Postives = 56/93 (60.22%), Query Frame = 0
Query:    7 ATSLDFLLQALCGRKLHLELRNNVHVKGMLDSVDANMNVTISNASYTTPTRQHAKTTAPLSFDLVYIAARHITFVHIPEDVNVWETMEIHTKR 99
            A SL  +LQ+L GR+  +ELRN + V G ++SVDA MNV +S+A+   P  +        ++   ++  R + ++HIP+D+++  ++++   R
Sbjct:   11 AKSLVLMLQSLRGRQTTIELRNELSVWGTVESVDAFMNVDLSDATVVGPNGEE-------TYASFFVQGRQVRYIHIPDDIDMAASLQLQNTR 96          
BLAST of Ggra10228.t1 vs. uniprot
Match: A0A6M2CMZ5 (Putative u6 snrna-associated sm-like protein lsm2 ovary overexpressed n=2 Tax=Rhipicephalus microplus TaxID=6941 RepID=A0A6M2CMZ5_RHIMP)

HSP 1 Score: 57.0 bits (136), Expect = 6.420e-8
Identity = 30/93 (32.26%), Postives = 57/93 (61.29%), Query Frame = 0
Query:    7 ATSLDFLLQALCGRKLHLELRNNVHVKGMLDSVDANMNVTISNASYTTPTRQHAKTTAPLSFDLVYIAARHITFVHIPEDVNVWETMEIHTKR 99
            A SL  +LQ+L GR+  +ELRN + V G ++SVDA MNV +S+A+   P+ +        ++   ++  R + ++HIP+D+++  ++++   R
Sbjct:   11 AKSLVLMLQSLRGRQTTIELRNELSVWGTVESVDAFMNVDLSDATVVGPSGEK-------NYASFFVQGRQVRYIHIPDDIDMAASLQLQDTR 96          
BLAST of Ggra10228.t1 vs. uniprot
Match: U7 snRNA-associated Sm-like protein LSm10 n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFBEBB5 (U7 snRNA-associated Sm-like protein LSm10 n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFBEBB5)

HSP 1 Score: 56.2 bits (134), Expect = 1.080e-7
Identity = 33/104 (31.73%), Postives = 59/104 (56.73%), Query Frame = 0
Query:    9 SLDFLLQALCGRKLHLELRNNVHVKGMLDSVDANMNVTISNASYTTPTRQHAKTTAPLSFDLVYIAARHITFVHIPEDVNVWETMEIHTKRLEAVKYASSGGKR 112
            SL  LLQ L G    ++LR+   V+G + +VDA MN+ ++ A+YT    Q  K       +  ++  R + +VHIP++VN+ ET+E   +++  ++   S G++
Sbjct:   25 SLIILLQGLHGCSTTVDLRDESMVQGRIINVDAFMNIRLTEATYTDRRGQVTK------MENFFVTGRSVRYVHIPDEVNIIETIENQLQKIHRIRNFRSKGRK 122          
The following BLAST results are available for this feature:
BLAST of Ggra10228.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J7383.950e-2249.51U7 snRNA-associated Sm-like protein LSm10 n=1 Tax=... [more]
H3B8292.520e-933.01Sm domain-containing protein n=1 Tax=Latimeria cha... [more]
U7 snRNA-associated Sm-like protein LSm10 isoform X1 n=2 Tax=Eptesicus fuscus TaxID=29078 RepID=UPI00101AA1651.120e-833.02U7 snRNA-associated Sm-like protein LSm10 isoform ... [more]
U7 snRNA-associated Sm-like protein LSm10 n=1 Tax=Rhipicephalus sanguineus TaxID=34632 RepID=UPI0018934FEE1.170e-833.33U7 snRNA-associated Sm-like protein LSm10 n=1 Tax=... [more]
A0A672HLG11.590e-838.68Organic solute carrier partner 1a n=2 Tax=Salarias... [more]
A0A6M2CNV93.270e-832.26Putative u6 snrna-associated sm-like protein lsm2 ... [more]
F1Q9404.050e-833.33Organic solute carrier partner 1a n=2 Tax=Danio re... [more]
L7M2164.660e-832.26Sm domain-containing protein n=4 Tax=Rhipicephalus... [more]
A0A6M2CMZ56.420e-832.26Putative u6 snrna-associated sm-like protein lsm2 ... [more]
U7 snRNA-associated Sm-like protein LSm10 n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFBEBB51.080e-731.73U7 snRNA-associated Sm-like protein LSm10 n=1 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 14..81
e-value: 3.2E-8
score: 33.1
NoneNo IPR availableGENE3D2.30.30.100coord: 10..95
e-value: 3.5E-16
score: 60.6
NoneNo IPR availablePANTHERPTHR21196U7 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM10coord: 3..113
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 13..99

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:159840..160346 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10228.t1Ggra10228.t1Gracilaria gracilis GNS1m malemRNAtig00000016_pilon 159840..160346 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra10228.t1 ID=Ggra10228.t1|Name=Ggra10228.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=116bp
MSRKNEATSLDFLLQALCGRKLHLELRNNVHVKGMLDSVDANMNVTISNA
SYTTPTRQHAKTTAPLSFDLVYIAARHITFVHIPEDVNVWETMEIHTKRL
EAVKYASSGGKRRKR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf