Ggra118.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra118.t1
Unique NameGgra118.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length190
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000221_piloncontigtig00000221_pilon:56597..57166 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra118Ggra118Gracilaria gracilis GNS1m malegenetig00000221_pilon 56597..57166 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra118.t1.stop1Ggra118.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000221_pilon 56597..56599 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra118.t1.CDS1Ggra118.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000221_pilon 56597..57166 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra118.t1.exon1Ggra118.t1.exon1Gracilaria gracilis GNS1m maleexontig00000221_pilon 56597..57166 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra118.t1.start1Ggra118.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000221_pilon 57164..57166 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra118.t1Ggra118.t1Gracilaria gracilis GNS1m malepolypeptidetig00000221_pilon 56597..57166 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra118.t1 ID=Ggra118.t1|Name=Ggra118.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=190bp
MKLTISPLPPLLREAARTYLHHRLICVNVDSKAEGQCKTSEILQFASYIG
DTFTEPQIRDCHLQTTIAGIWKQLEQISTALSELVVTLESQESLGIENTL
IRVTSSLLTNVTIAFHLMAHDRENYVSLHEEMLLSLFLHQTSQSYKKSCD
VCMENNIDFDAQGMTSAPEDGSETVDTIDTQTMLAELAL*
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spliced messenger RNA

>Ggra118.t1 ID=Ggra118.t1|Name=Ggra118.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=570bp|location=Sequence derived from alignment at tig00000221_pilon:56597..57166- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACTAACAATCTCTCCACTTCCCCCTTTGCTACGAGAAGCTGCGCG
AACGTATCTGCATCACCGCCTTATCTGCGTGAATGTAGACAGCAAAGCAG
AAGGCCAATGCAAAACTTCAGAGATTCTCCAGTTCGCGAGCTACATCGGG
GATACCTTTACTGAGCCACAAATTCGTGACTGCCACCTTCAGACCACTAT
TGCTGGCATTTGGAAGCAACTTGAACAGATTTCTACGGCGTTGAGTGAAC
TGGTTGTGACTCTAGAAAGCCAAGAATCTTTGGGAATTGAGAACACACTG
ATTCGCGTTACGTCATCGCTTCTCACGAATGTCACTATTGCTTTCCACTT
GATGGCGCACGACCGAGAGAACTATGTCTCCCTCCATGAAGAAATGTTGT
TATCGTTGTTCCTACATCAAACCTCGCAAAGTTACAAGAAATCATGTGAC
GTGTGTATGGAAAACAACATTGACTTCGACGCCCAAGGGATGACCTCTGC
TCCAGAAGACGGTAGTGAAACTGTGGACACGATAGACACACAGACCATGT
TAGCTGAACTGGCCTTGTGA
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protein sequence of Ggra118.t1

>Ggra118.t1 ID=Ggra118.t1|Name=Ggra118.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=190bp
MKLTISPLPPLLREAARTYLHHRLICVNVDSKAEGQCKTSEILQFASYIG
DTFTEPQIRDCHLQTTIAGIWKQLEQISTALSELVVTLESQESLGIENTL
IRVTSSLLTNVTIAFHLMAHDRENYVSLHEEMLLSLFLHQTSQSYKKSCD
VCMENNIDFDAQGMTSAPEDGSETVDTIDTQTMLAELAL*
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mRNA from alignment at tig00000221_pilon:56597..57166-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra118.t1 ID=Ggra118.t1|Name=Ggra118.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=570bp|location=Sequence derived from alignment at tig00000221_pilon:56597..57166- (Gracilaria gracilis GNS1m male)
ATGAAACTAACAATCTCTCCACTTCCCCCTTTGCTACGAGAAGCTGCGCG
AACGTATCTGCATCACCGCCTTATCTGCGTGAATGTAGACAGCAAAGCAG
AAGGCCAATGCAAAACTTCAGAGATTCTCCAGTTCGCGAGCTACATCGGG
GATACCTTTACTGAGCCACAAATTCGTGACTGCCACCTTCAGACCACTAT
TGCTGGCATTTGGAAGCAACTTGAACAGATTTCTACGGCGTTGAGTGAAC
TGGTTGTGACTCTAGAAAGCCAAGAATCTTTGGGAATTGAGAACACACTG
ATTCGCGTTACGTCATCGCTTCTCACGAATGTCACTATTGCTTTCCACTT
GATGGCGCACGACCGAGAGAACTATGTCTCCCTCCATGAAGAAATGTTGT
TATCGTTGTTCCTACATCAAACCTCGCAAAGTTACAAGAAATCATGTGAC
GTGTGTATGGAAAACAACATTGACTTCGACGCCCAAGGGATGACCTCTGC
TCCAGAAGACGGTAGTGAAACTGTGGACACGATAGACACACAGACCATGT
TAGCTGAACTGGCCTTGTGA
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Coding sequence (CDS) from alignment at tig00000221_pilon:56597..57166-

>Ggra118.t1 ID=Ggra118.t1|Name=Ggra118.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=570bp|location=Sequence derived from alignment at tig00000221_pilon:56597..57166- (Gracilaria gracilis GNS1m male)
ATGAAACTAACAATCTCTCCACTTCCCCCTTTGCTACGAGAAGCTGCGCG
AACGTATCTGCATCACCGCCTTATCTGCGTGAATGTAGACAGCAAAGCAG
AAGGCCAATGCAAAACTTCAGAGATTCTCCAGTTCGCGAGCTACATCGGG
GATACCTTTACTGAGCCACAAATTCGTGACTGCCACCTTCAGACCACTAT
TGCTGGCATTTGGAAGCAACTTGAACAGATTTCTACGGCGTTGAGTGAAC
TGGTTGTGACTCTAGAAAGCCAAGAATCTTTGGGAATTGAGAACACACTG
ATTCGCGTTACGTCATCGCTTCTCACGAATGTCACTATTGCTTTCCACTT
GATGGCGCACGACCGAGAGAACTATGTCTCCCTCCATGAAGAAATGTTGT
TATCGTTGTTCCTACATCAAACCTCGCAAAGTTACAAGAAATCATGTGAC
GTGTGTATGGAAAACAACATTGACTTCGACGCCCAAGGGATGACCTCTGC
TCCAGAAGACGGTAGTGAAACTGTGGACACGATAGACACACAGACCATGT
TAGCTGAACTGGCCTTGTGA
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