Ggra792.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra792.t1
Unique NameGgra792.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length117
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000218_piloncontigtig00000218_pilon:61715..62065 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra792Ggra792Gracilaria gracilis GNS1m malegenetig00000218_pilon 61715..62065 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra792.t1.start1Ggra792.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000218_pilon 61715..61717 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra792.t1.CDS1Ggra792.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000218_pilon 61715..62065 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra792.t1.exon1Ggra792.t1.exon1Gracilaria gracilis GNS1m maleexontig00000218_pilon 61715..62065 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra792.t1.stop1Ggra792.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000218_pilon 62063..62065 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra792.t1Ggra792.t1Gracilaria gracilis GNS1m malepolypeptidetig00000218_pilon 61715..62065 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra792.t1 ID=Ggra792.t1|Name=Ggra792.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=117bp
MITWASDREEVLDLEWDQLEVTDVEHALRVLREPMTFEAREDIVDEDIRE
VVIAEKGATLGWCGEVEALVDPPALAQVFNAVGEVWHNTPLMVVETEVVV
ENTTITVVLFQGAKQR*
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spliced messenger RNA

>Ggra792.t1 ID=Ggra792.t1|Name=Ggra792.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=351bp|location=Sequence derived from alignment at tig00000218_pilon:61715..62065+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCACCTGGGCGTCGGACCGCGAGGAGGTGCTCGACCTCGAATGGGA
CCAGCTCGAAGTCACAGACGTAGAGCACGCACTGCGCGTGCTGCGCGAGC
CGATGACGTTTGAAGCACGCGAGGACATTGTGGATGAGGATATCCGAGAA
GTGGTAATCGCGGAGAAGGGCGCAACTCTAGGGTGGTGTGGCGAAGTAGA
GGCACTGGTCGACCCGCCCGCTCTAGCACAGGTGTTTAATGCGGTTGGGG
AGGTGTGGCACAACACACCGCTGATGGTGGTTGAAACGGAGGTTGTGGTC
GAGAACACGACGATAACAGTTGTTTTGTTTCAGGGAGCGAAACAGAGATG
A
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protein sequence of Ggra792.t1

>Ggra792.t1 ID=Ggra792.t1|Name=Ggra792.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=117bp
MITWASDREEVLDLEWDQLEVTDVEHALRVLREPMTFEAREDIVDEDIRE
VVIAEKGATLGWCGEVEALVDPPALAQVFNAVGEVWHNTPLMVVETEVVV
ENTTITVVLFQGAKQR*
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mRNA from alignment at tig00000218_pilon:61715..62065+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra792.t1 ID=Ggra792.t1|Name=Ggra792.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=351bp|location=Sequence derived from alignment at tig00000218_pilon:61715..62065+ (Gracilaria gracilis GNS1m male)
ATGATCACCTGGGCGTCGGACCGCGAGGAGGTGCTCGACCTCGAATGGGA
CCAGCTCGAAGTCACAGACGTAGAGCACGCACTGCGCGTGCTGCGCGAGC
CGATGACGTTTGAAGCACGCGAGGACATTGTGGATGAGGATATCCGAGAA
GTGGTAATCGCGGAGAAGGGCGCAACTCTAGGGTGGTGTGGCGAAGTAGA
GGCACTGGTCGACCCGCCCGCTCTAGCACAGGTGTTTAATGCGGTTGGGG
AGGTGTGGCACAACACACCGCTGATGGTGGTTGAAACGGAGGTTGTGGTC
GAGAACACGACGATAACAGTTGTTTTGTTTCAGGGAGCGAAACAGAGATG
A
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Coding sequence (CDS) from alignment at tig00000218_pilon:61715..62065+

>Ggra792.t1 ID=Ggra792.t1|Name=Ggra792.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=351bp|location=Sequence derived from alignment at tig00000218_pilon:61715..62065+ (Gracilaria gracilis GNS1m male)
ATGATCACCTGGGCGTCGGACCGCGAGGAGGTGCTCGACCTCGAATGGGA
CCAGCTCGAAGTCACAGACGTAGAGCACGCACTGCGCGTGCTGCGCGAGC
CGATGACGTTTGAAGCACGCGAGGACATTGTGGATGAGGATATCCGAGAA
GTGGTAATCGCGGAGAAGGGCGCAACTCTAGGGTGGTGTGGCGAAGTAGA
GGCACTGGTCGACCCGCCCGCTCTAGCACAGGTGTTTAATGCGGTTGGGG
AGGTGTGGCACAACACACCGCTGATGGTGGTTGAAACGGAGGTTGTGGTC
GAGAACACGACGATAACAGTTGTTTTGTTTCAGGGAGCGAAACAGAGATG
A
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