Ggra878.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra878.t1
Unique NameGgra878.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length297
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000212_piloncontigtig00000212_pilon:41501..42391 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ32099
PFAMszf-RING_2
Max annot lvl35493|Streptophyta
KEGG koko:K22377
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
Evalue6.29e-10
EggNOG OGsCOG5219@1|root,KOG0803@2759|Eukaryota,37RZJ@33090|Viridiplantae,3GFEM@35493|Streptophyta
EC2.3.2.27
DescriptionE3 ubiquitin-protein ligase
COG categoryO
BRITEko00000,ko01000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra878Ggra878Gracilaria gracilis GNS1m malegenetig00000212_pilon 41501..42391 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra878.t1.stop1Ggra878.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000212_pilon 41501..41503 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra878.t1.CDS1Ggra878.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000212_pilon 41501..42391 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra878.t1.exon1Ggra878.t1.exon1Gracilaria gracilis GNS1m maleexontig00000212_pilon 41501..42391 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra878.t1.start1Ggra878.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000212_pilon 42389..42391 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra878.t1Ggra878.t1Gracilaria gracilis GNS1m malepolypeptidetig00000212_pilon 41501..42391 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra878.t1 ID=Ggra878.t1|Name=Ggra878.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=297bp
MSNAPPPPPPSPPPSPPPPPPPPPLGAAALGGAPLLGDGAPLLGDGARAL
AHGAFAVGAFGATAGVTAAGAALMTPAHAPAHSHGVYVPELTPFALQHVQ
LHMIHMQQQQQQQQQQQQQQQQQQTSQQGGVAAGDVTSPQSNTTRTALSA
ATSEARDGEGSVPDIQMESAYRIGRYTPAERRVRLQRYRQKRAQRNYSRR
VKYDCRKLIADKRRRVQGRFVKREHELELARIQQLRDNHKLDVRHCAPPP
SPPPPPPPPPPPPPPPPPLQLQLHPLAAAQPLPDAVEVHDVLQHFR*
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spliced messenger RNA

>Ggra878.t1 ID=Ggra878.t1|Name=Ggra878.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=891bp|location=Sequence derived from alignment at tig00000212_pilon:41501..42391- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGAACGCGCCGCCGCCGCCGCCGCCCTCTCCGCCGCCCTCTCCGCC
GCCGCCGCCGCCGCCGCCGCCGCTGGGCGCGGCGGCGCTGGGAGGCGCGC
CGCTGCTTGGCGACGGCGCGCCGCTGCTTGGCGACGGCGCGCGCGCACTT
GCGCATGGCGCGTTTGCTGTGGGCGCTTTTGGCGCCACGGCGGGCGTCAC
GGCGGCCGGCGCCGCGTTGATGACGCCCGCGCACGCGCCCGCGCACTCGC
ACGGCGTGTACGTTCCGGAACTGACGCCGTTCGCGTTGCAGCACGTGCAG
TTGCACATGATACACATGCAACAACAACAACAACAACAGCAACAGCAACA
GCAACAGCAACAGCAGCAACAGACGTCACAACAGGGTGGGGTGGCGGCGG
GCGATGTGACGTCACCGCAGTCCAACACCACTCGCACGGCGCTTTCGGCC
GCTACCAGTGAGGCGCGCGACGGCGAGGGCAGCGTGCCGGACATTCAAAT
GGAGTCTGCGTACCGCATTGGACGCTACACGCCGGCCGAACGGCGCGTCA
GACTACAGCGCTACCGGCAGAAACGCGCGCAGCGTAACTACAGCCGCCGC
GTCAAGTACGATTGCCGCAAGCTCATCGCCGACAAGCGCCGCCGCGTGCA
GGGCAGGTTCGTCAAGCGCGAGCACGAACTGGAACTGGCCAGAATACAAC
AGCTGCGCGACAACCACAAGCTGGACGTGCGTCATTGCGCGCCGCCGCCG
TCGCCGCCGCCGCCGCCGCCTCCGCCGCCTCCGCCGCCGCCGCCGCCTCC
GCCGCTGCAGCTGCAGCTGCACCCGCTGGCGGCCGCCCAGCCGCTGCCGG
ACGCCGTTGAGGTGCACGACGTGCTGCAGCACTTTCGGTGA
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protein sequence of Ggra878.t1

>Ggra878.t1 ID=Ggra878.t1|Name=Ggra878.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=297bp
MSNAPPPPPPSPPPSPPPPPPPPPLGAAALGGAPLLGDGAPLLGDGARAL
AHGAFAVGAFGATAGVTAAGAALMTPAHAPAHSHGVYVPELTPFALQHVQ
LHMIHMQQQQQQQQQQQQQQQQQQTSQQGGVAAGDVTSPQSNTTRTALSA
ATSEARDGEGSVPDIQMESAYRIGRYTPAERRVRLQRYRQKRAQRNYSRR
VKYDCRKLIADKRRRVQGRFVKREHELELARIQQLRDNHKLDVRHCAPPP
SPPPPPPPPPPPPPPPPPLQLQLHPLAAAQPLPDAVEVHDVLQHFR*
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mRNA from alignment at tig00000212_pilon:41501..42391-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra878.t1 ID=Ggra878.t1|Name=Ggra878.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=891bp|location=Sequence derived from alignment at tig00000212_pilon:41501..42391- (Gracilaria gracilis GNS1m male)
ATGTCGAACGCGCCGCCGCCGCCGCCGCCCTCTCCGCCGCCCTCTCCGCC
GCCGCCGCCGCCGCCGCCGCCGCTGGGCGCGGCGGCGCTGGGAGGCGCGC
CGCTGCTTGGCGACGGCGCGCCGCTGCTTGGCGACGGCGCGCGCGCACTT
GCGCATGGCGCGTTTGCTGTGGGCGCTTTTGGCGCCACGGCGGGCGTCAC
GGCGGCCGGCGCCGCGTTGATGACGCCCGCGCACGCGCCCGCGCACTCGC
ACGGCGTGTACGTTCCGGAACTGACGCCGTTCGCGTTGCAGCACGTGCAG
TTGCACATGATACACATGCAACAACAACAACAACAACAGCAACAGCAACA
GCAACAGCAACAGCAGCAACAGACGTCACAACAGGGTGGGGTGGCGGCGG
GCGATGTGACGTCACCGCAGTCCAACACCACTCGCACGGCGCTTTCGGCC
GCTACCAGTGAGGCGCGCGACGGCGAGGGCAGCGTGCCGGACATTCAAAT
GGAGTCTGCGTACCGCATTGGACGCTACACGCCGGCCGAACGGCGCGTCA
GACTACAGCGCTACCGGCAGAAACGCGCGCAGCGTAACTACAGCCGCCGC
GTCAAGTACGATTGCCGCAAGCTCATCGCCGACAAGCGCCGCCGCGTGCA
GGGCAGGTTCGTCAAGCGCGAGCACGAACTGGAACTGGCCAGAATACAAC
AGCTGCGCGACAACCACAAGCTGGACGTGCGTCATTGCGCGCCGCCGCCG
TCGCCGCCGCCGCCGCCGCCTCCGCCGCCTCCGCCGCCGCCGCCGCCTCC
GCCGCTGCAGCTGCAGCTGCACCCGCTGGCGGCCGCCCAGCCGCTGCCGG
ACGCCGTTGAGGTGCACGACGTGCTGCAGCACTTTCGGTGA
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Coding sequence (CDS) from alignment at tig00000212_pilon:41501..42391-

>Ggra878.t1 ID=Ggra878.t1|Name=Ggra878.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=891bp|location=Sequence derived from alignment at tig00000212_pilon:41501..42391- (Gracilaria gracilis GNS1m male)
ATGTCGAACGCGCCGCCGCCGCCGCCGCCCTCTCCGCCGCCCTCTCCGCC
GCCGCCGCCGCCGCCGCCGCCGCTGGGCGCGGCGGCGCTGGGAGGCGCGC
CGCTGCTTGGCGACGGCGCGCCGCTGCTTGGCGACGGCGCGCGCGCACTT
GCGCATGGCGCGTTTGCTGTGGGCGCTTTTGGCGCCACGGCGGGCGTCAC
GGCGGCCGGCGCCGCGTTGATGACGCCCGCGCACGCGCCCGCGCACTCGC
ACGGCGTGTACGTTCCGGAACTGACGCCGTTCGCGTTGCAGCACGTGCAG
TTGCACATGATACACATGCAACAACAACAACAACAACAGCAACAGCAACA
GCAACAGCAACAGCAGCAACAGACGTCACAACAGGGTGGGGTGGCGGCGG
GCGATGTGACGTCACCGCAGTCCAACACCACTCGCACGGCGCTTTCGGCC
GCTACCAGTGAGGCGCGCGACGGCGAGGGCAGCGTGCCGGACATTCAAAT
GGAGTCTGCGTACCGCATTGGACGCTACACGCCGGCCGAACGGCGCGTCA
GACTACAGCGCTACCGGCAGAAACGCGCGCAGCGTAACTACAGCCGCCGC
GTCAAGTACGATTGCCGCAAGCTCATCGCCGACAAGCGCCGCCGCGTGCA
GGGCAGGTTCGTCAAGCGCGAGCACGAACTGGAACTGGCCAGAATACAAC
AGCTGCGCGACAACCACAAGCTGGACGTGCGTCATTGCGCGCCGCCGCCG
TCGCCGCCGCCGCCGCCGCCTCCGCCGCCTCCGCCGCCGCCGCCGCCTCC
GCCGCTGCAGCTGCAGCTGCACCCGCTGGCGGCCGCCCAGCCGCTGCCGG
ACGCCGTTGAGGTGCACGACGTGCTGCAGCACTTTCGGTGA
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