Ggra1260.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1260.t1
Unique NameGgra1260.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length261
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000208_piloncontigtig00000208_pilon:53805..54587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMQ438CT
Max annot lvl2759|Eukaryota
Evalue5.22e-58
EggNOG OGs28RT2@1|root,2QYGC@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1260Ggra1260Gracilaria gracilis GNS1m malegenetig00000208_pilon 53805..54587 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1260.t1.stop1Ggra1260.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000208_pilon 53805..53807 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1260.t1.CDS1Ggra1260.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000208_pilon 53805..54587 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1260.t1.exon1Ggra1260.t1.exon1Gracilaria gracilis GNS1m maleexontig00000208_pilon 53805..54587 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1260.t1.start1Ggra1260.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000208_pilon 54585..54587 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1260.t1Ggra1260.t1Gracilaria gracilis GNS1m malepolypeptidetig00000208_pilon 53805..54587 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1260.t1 ID=Ggra1260.t1|Name=Ggra1260.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=261bp
MCPGQAVRTPPPSDFHHSVRRKEAAPQTTPTPPSPSPPAAPQPSKHVENP
APTARRSCSKTTAIIDWDDTICPSTYLASLGLRVDDRNSLSVSLRTQLEQ
LEDAVIEIVKEALRFGKVVIITNAEAGWVELSGRRFLPRVVTFLMENDIK
IVSARTSFESDFPDAPSSWKVAAFSQEVAVMFPNEDQLNVLVLGDSMSER
DAAHALSTRLPNSRVKTVKFVERPSIDQLMRQVQLVAQSLPDLATYASSF
DVDLVVSANA*
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spliced messenger RNA

>Ggra1260.t1 ID=Ggra1260.t1|Name=Ggra1260.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=783bp|location=Sequence derived from alignment at tig00000208_pilon:53805..54587- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCCCCGGTCAAGCTGTGCGAACGCCACCCCCTTCTGACTTCCACCA
CTCGGTTCGGAGAAAGGAAGCTGCACCACAAACTACTCCAACACCCCCTT
CGCCAAGTCCACCGGCCGCGCCGCAGCCCTCGAAACATGTCGAAAACCCG
GCGCCAACCGCACGGCGGTCTTGTTCGAAGACCACGGCTATCATAGACTG
GGATGACACAATATGTCCGAGTACGTATCTCGCCTCGCTCGGCCTGCGCG
TCGACGACCGAAACTCGCTTTCGGTCAGCCTTCGTACGCAGCTTGAGCAG
CTTGAAGACGCTGTTATCGAAATCGTGAAAGAAGCGCTCCGGTTCGGCAA
GGTGGTTATCATTACCAACGCGGAAGCTGGATGGGTTGAATTGTCCGGGC
GGCGCTTTCTTCCCCGAGTCGTGACCTTCCTCATGGAGAATGATATTAAG
ATTGTTTCCGCGCGCACCTCCTTCGAATCTGACTTCCCCGATGCCCCGTC
CTCTTGGAAGGTGGCTGCCTTCTCTCAGGAGGTTGCCGTCATGTTCCCGA
ACGAAGACCAACTCAACGTACTTGTCTTAGGCGACTCTATGTCTGAACGC
GATGCTGCTCATGCCCTGTCAACCCGACTTCCCAACTCACGAGTGAAGAC
TGTTAAATTTGTTGAGCGTCCTTCGATTGACCAGCTCATGCGCCAGGTGC
AACTGGTTGCCCAGTCGTTACCAGACTTGGCTACCTATGCGTCAAGTTTT
GACGTTGACCTCGTTGTGTCTGCTAACGCATAA
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protein sequence of Ggra1260.t1

>Ggra1260.t1 ID=Ggra1260.t1|Name=Ggra1260.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=261bp
MCPGQAVRTPPPSDFHHSVRRKEAAPQTTPTPPSPSPPAAPQPSKHVENP
APTARRSCSKTTAIIDWDDTICPSTYLASLGLRVDDRNSLSVSLRTQLEQ
LEDAVIEIVKEALRFGKVVIITNAEAGWVELSGRRFLPRVVTFLMENDIK
IVSARTSFESDFPDAPSSWKVAAFSQEVAVMFPNEDQLNVLVLGDSMSER
DAAHALSTRLPNSRVKTVKFVERPSIDQLMRQVQLVAQSLPDLATYASSF
DVDLVVSANA*
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mRNA from alignment at tig00000208_pilon:53805..54587-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1260.t1 ID=Ggra1260.t1|Name=Ggra1260.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=783bp|location=Sequence derived from alignment at tig00000208_pilon:53805..54587- (Gracilaria gracilis GNS1m male)
ATGTGCCCCGGTCAAGCTGTGCGAACGCCACCCCCTTCTGACTTCCACCA
CTCGGTTCGGAGAAAGGAAGCTGCACCACAAACTACTCCAACACCCCCTT
CGCCAAGTCCACCGGCCGCGCCGCAGCCCTCGAAACATGTCGAAAACCCG
GCGCCAACCGCACGGCGGTCTTGTTCGAAGACCACGGCTATCATAGACTG
GGATGACACAATATGTCCGAGTACGTATCTCGCCTCGCTCGGCCTGCGCG
TCGACGACCGAAACTCGCTTTCGGTCAGCCTTCGTACGCAGCTTGAGCAG
CTTGAAGACGCTGTTATCGAAATCGTGAAAGAAGCGCTCCGGTTCGGCAA
GGTGGTTATCATTACCAACGCGGAAGCTGGATGGGTTGAATTGTCCGGGC
GGCGCTTTCTTCCCCGAGTCGTGACCTTCCTCATGGAGAATGATATTAAG
ATTGTTTCCGCGCGCACCTCCTTCGAATCTGACTTCCCCGATGCCCCGTC
CTCTTGGAAGGTGGCTGCCTTCTCTCAGGAGGTTGCCGTCATGTTCCCGA
ACGAAGACCAACTCAACGTACTTGTCTTAGGCGACTCTATGTCTGAACGC
GATGCTGCTCATGCCCTGTCAACCCGACTTCCCAACTCACGAGTGAAGAC
TGTTAAATTTGTTGAGCGTCCTTCGATTGACCAGCTCATGCGCCAGGTGC
AACTGGTTGCCCAGTCGTTACCAGACTTGGCTACCTATGCGTCAAGTTTT
GACGTTGACCTCGTTGTGTCTGCTAACGCATAA
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Coding sequence (CDS) from alignment at tig00000208_pilon:53805..54587-

>Ggra1260.t1 ID=Ggra1260.t1|Name=Ggra1260.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=783bp|location=Sequence derived from alignment at tig00000208_pilon:53805..54587- (Gracilaria gracilis GNS1m male)
ATGTGCCCCGGTCAAGCTGTGCGAACGCCACCCCCTTCTGACTTCCACCA
CTCGGTTCGGAGAAAGGAAGCTGCACCACAAACTACTCCAACACCCCCTT
CGCCAAGTCCACCGGCCGCGCCGCAGCCCTCGAAACATGTCGAAAACCCG
GCGCCAACCGCACGGCGGTCTTGTTCGAAGACCACGGCTATCATAGACTG
GGATGACACAATATGTCCGAGTACGTATCTCGCCTCGCTCGGCCTGCGCG
TCGACGACCGAAACTCGCTTTCGGTCAGCCTTCGTACGCAGCTTGAGCAG
CTTGAAGACGCTGTTATCGAAATCGTGAAAGAAGCGCTCCGGTTCGGCAA
GGTGGTTATCATTACCAACGCGGAAGCTGGATGGGTTGAATTGTCCGGGC
GGCGCTTTCTTCCCCGAGTCGTGACCTTCCTCATGGAGAATGATATTAAG
ATTGTTTCCGCGCGCACCTCCTTCGAATCTGACTTCCCCGATGCCCCGTC
CTCTTGGAAGGTGGCTGCCTTCTCTCAGGAGGTTGCCGTCATGTTCCCGA
ACGAAGACCAACTCAACGTACTTGTCTTAGGCGACTCTATGTCTGAACGC
GATGCTGCTCATGCCCTGTCAACCCGACTTCCCAACTCACGAGTGAAGAC
TGTTAAATTTGTTGAGCGTCCTTCGATTGACCAGCTCATGCGCCAGGTGC
AACTGGTTGCCCAGTCGTTACCAGACTTGGCTACCTATGCGTCAAGTTTT
GACGTTGACCTCGTTGTGTCTGCTAACGCATAA
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