Ggra11088.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11088.t1
Unique NameGgra11088.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length568
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000207_piloncontigtig00000207_pilon:86375..89802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1267535.KB906767_gene4481
PFAMsDUF4157,Glucosaminidase,LysM
Max annot lvl2|Bacteria
Evalue8.35e-23
EggNOG OGsCOG1652@1|root,COG1652@2|Bacteria
Descriptionpositive regulation of growth rate
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11088Ggra11088Gracilaria gracilis GNS1m malegenetig00000207_pilon 86375..89802 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11088.t1Ggra11088.t1Gracilaria gracilis GNS1m malepolypeptidetig00000207_pilon 86375..89802 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11088.t1.start1Ggra11088.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000207_pilon 86375..86377 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11088.t1.CDS1Ggra11088.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000207_pilon 86375..86654 +
Ggra11088.t1.CDS2Ggra11088.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000207_pilon 88335..88679 +
Ggra11088.t1.CDS3Ggra11088.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000207_pilon 88724..89802 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11088.t1.exon1Ggra11088.t1.exon1Gracilaria gracilis GNS1m maleexontig00000207_pilon 86375..86654 +
Ggra11088.t1.exon2Ggra11088.t1.exon2Gracilaria gracilis GNS1m maleexontig00000207_pilon 88335..88679 +
Ggra11088.t1.exon3Ggra11088.t1.exon3Gracilaria gracilis GNS1m maleexontig00000207_pilon 88724..89802 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11088.t1.intron1Ggra11088.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000207_pilon 86655..88334 +
Ggra11088.t1.intron2Ggra11088.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000207_pilon 88680..88723 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11088.t1.stop1Ggra11088.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000207_pilon 89800..89802 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11088.t1 ID=Ggra11088.t1|Name=Ggra11088.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=568bp
MMATQATERASQAAVRRAALVCDALREHTRCAACGALRLHERPFRSLVCG
HSFCERCATIARGDDHARQTRVGECPIAECARHVRPADVVEDVDKNGRLL
RENTTLLELHNVNSEKRVASGFDELTTSLKSAIAAGGGFAAFKTTIATHY
EFETTQRTDYFFSRVAAVTQRGQVRLQRFSAADLEELVYPNVSSFLASSA
PQQIFSTYVVVSVEGLIVKGGTLVMGDDAESEWIQSTTSNSQAIQFLPDG
VIPIWQLIPNATQSKRVKEHYDQVFGAMSMILKRFESPALNSVGRVPHPE
AQVYVPKGWKVISGGAKVQFYGSGQLLTRSYPIVEDGNPVGWMAQSKDHI
KSDIGKIQAFAIGLWDPFDSWSVIVRQSTSSTTAHPSTTAYLPSNAGYER
TGGGANALWKSAGSMLVASALTERSPMGWTAGSMDHIRSEPVRIKAYVIG
MKRSAKENPFVRTRWVRFGPAQHPSGTTHATHGCSFVGGGAKVSRGGPGN
FLVNAFPSSDGETFSCTAKDHLRTDFRYLTVYGIEAEGALYVNDIEDTLG
FDPTVRFEPKVSVRNKS*
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spliced messenger RNA

>Ggra11088.t1 ID=Ggra11088.t1|Name=Ggra11088.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1704bp|location=Sequence derived from alignment at tig00000207_pilon:86375..89802+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGCGACGCAAGCGACCGAGCGCGCGTCGCAAGCCGCCGTGCGTCG
CGCCGCGCTCGTGTGCGACGCGCTGCGCGAGCACACGCGCTGCGCGGCGT
GCGGCGCGCTTCGCCTGCACGAGCGCCCGTTCCGCTCGCTGGTGTGCGGC
CATTCGTTCTGCGAACGCTGCGCCACGATTGCGCGCGGGGACGACCACGC
GCGTCAGACGCGCGTGGGCGAGTGTCCCATCGCTGAGTGCGCGCGGCATG
TTCGTCCGGCCGATGTGGTGGAGGACGTCGACAAAAATGGACGTTTGCTT
CGTGAGAACACTACTCTTCTAGAACTCCACAACGTAAACAGCGAAAAACG
AGTTGCAAGTGGTTTTGATGAACTCACAACATCACTCAAATCTGCCATTG
CAGCTGGGGGTGGCTTCGCGGCCTTCAAAACCACCATTGCAACGCACTAC
GAGTTCGAAACCACTCAGCGTACAGACTACTTCTTTTCTCGTGTAGCCGC
AGTCACTCAGCGCGGCCAAGTTCGCCTGCAGCGCTTCTCTGCGGCTGATC
TCGAAGAGCTTGTTTATCCTAACGTGTCGAGCTTCCTTGCCTCTTCCGCA
CCTCAACAAATCTTCTCAACGTATGTTGTGGTATCAGTGGAAGGACTGAT
TGTCAAAGGCGGAACACTTGTAATGGGGGACGATGCTGAATCGGAGTGGA
TTCAATCTACAACTTCCAACTCTCAAGCCATTCAGTTCTTGCCGGACGGT
GTGATTCCAATATGGCAATTGATTCCCAATGCTACCCAATCAAAGCGTGT
AAAGGAGCACTATGACCAAGTATTTGGAGCGATGTCAATGATTCTGAAGA
GATTTGAAAGCCCTGCACTCAACTCTGTAGGTCGAGTTCCGCATCCAGAA
GCACAAGTATATGTACCGAAAGGTTGGAAGGTGATCAGTGGGGGCGCGAA
AGTACAGTTTTATGGGTCTGGTCAGTTGCTAACCAGATCTTATCCGATTG
TAGAAGACGGAAACCCGGTAGGATGGATGGCTCAATCGAAAGACCACATC
AAATCAGACATTGGAAAGATTCAAGCGTTCGCTATTGGGCTATGGGATCC
ATTTGACTCCTGGAGTGTAATTGTCCGGCAGTCAACATCATCAACCACAG
CCCATCCGAGTACCACTGCGTATTTACCGTCAAACGCGGGCTACGAACGA
ACGGGCGGCGGGGCAAATGCCCTGTGGAAGAGTGCAGGAAGTATGTTGGT
GGCAAGTGCTCTAACGGAGCGCTCTCCTATGGGATGGACTGCTGGTTCAA
TGGATCATATCAGATCCGAACCAGTGCGGATAAAAGCATATGTGATTGGA
ATGAAGCGTAGCGCAAAGGAAAACCCGTTTGTTCGCACTAGGTGGGTGAG
GTTTGGTCCCGCCCAGCATCCTTCTGGCACAACTCATGCGACGCATGGAT
GCTCGTTTGTGGGTGGGGGAGCGAAAGTTTCAAGAGGAGGACCTGGCAAC
TTCTTGGTCAACGCTTTCCCGAGCTCGGACGGAGAAACGTTTTCATGTAC
CGCAAAAGACCATTTGCGAACAGATTTCCGGTATCTCACGGTTTACGGAA
TAGAGGCAGAAGGAGCACTCTATGTGAATGATATTGAAGATACGCTTGGA
TTTGATCCAACTGTTCGTTTCGAACCGAAAGTTTCGGTTCGAAACAAATC
ATAA
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protein sequence of Ggra11088.t1

>Ggra11088.t1 ID=Ggra11088.t1|Name=Ggra11088.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=568bp
MMATQATERASQAAVRRAALVCDALREHTRCAACGALRLHERPFRSLVCG
HSFCERCATIARGDDHARQTRVGECPIAECARHVRPADVVEDVDKNGRLL
RENTTLLELHNVNSEKRVASGFDELTTSLKSAIAAGGGFAAFKTTIATHY
EFETTQRTDYFFSRVAAVTQRGQVRLQRFSAADLEELVYPNVSSFLASSA
PQQIFSTYVVVSVEGLIVKGGTLVMGDDAESEWIQSTTSNSQAIQFLPDG
VIPIWQLIPNATQSKRVKEHYDQVFGAMSMILKRFESPALNSVGRVPHPE
AQVYVPKGWKVISGGAKVQFYGSGQLLTRSYPIVEDGNPVGWMAQSKDHI
KSDIGKIQAFAIGLWDPFDSWSVIVRQSTSSTTAHPSTTAYLPSNAGYER
TGGGANALWKSAGSMLVASALTERSPMGWTAGSMDHIRSEPVRIKAYVIG
MKRSAKENPFVRTRWVRFGPAQHPSGTTHATHGCSFVGGGAKVSRGGPGN
FLVNAFPSSDGETFSCTAKDHLRTDFRYLTVYGIEAEGALYVNDIEDTLG
FDPTVRFEPKVSVRNKS*
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mRNA from alignment at tig00000207_pilon:86375..89802+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11088.t1 ID=Ggra11088.t1|Name=Ggra11088.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=3428bp|location=Sequence derived from alignment at tig00000207_pilon:86375..89802+ (Gracilaria gracilis GNS1m male)
ATGATGGCGACGCAAGCGACCGAGCGCGCGTCGCAAGCCGCCGTGCGTCG
CGCCGCGCTCGTGTGCGACGCGCTGCGCGAGCACACGCGCTGCGCGGCGT
GCGGCGCGCTTCGCCTGCACGAGCGCCCGTTCCGCTCGCTGGTGTGCGGC
CATTCGTTCTGCGAACGCTGCGCCACGATTGCGCGCGGGGACGACCACGC
GCGTCAGACGCGCGTGGGCGAGTGTCCCATCGCTGAGTGCGCGCGGCATG
TTCGTCCGGCCGATGTGGTGGAGGACGTCGGTGTGTCTCACTTTCGCGCC
GCTTGTTATCAGCTGCTGCAATGGGCCGCCGCTGCCACGCGCGCTGCTGC
TGTTGCGCCGCCTTCTACGTGAAGCTACTGCTGTTTTTCTGAGCTTGTAA
CTTCCTCGTTTCCCCTTTTGTGCGCCGCGTCGCAGACTCGGCGCGCCTGC
TCCATGTGGTTTGGTGAGCGGTGCAAGCGCGAGCTCTCACCCGTACTGTA
GATTAGCTAACCTTCGAGAGCACATGCCGTGTAAAAGCTGCCATTGTACG
CTCAGTGTGTGCGCTCGAGCCATCTGCGCGCGCCTCGCGACAGAGCCGCC
AGCGACCTATCTACACTGTGTGCATTGCTTGCCGAGGACATTGGGTGCCC
ATCAGTTGGCATCAGTGCGCGTGACTGCTTTTTTACCACGCTTGAATTGG
CAACGGAGTTCGATGCGCAACACGTTTATAAACACGCGCCGCTTGTTGCC
ACAACGCTAAATTTTGAGTTGAAGTGAAGCGCGGAGCGCGACGTGGCAGA
AAGCACGTTGCGCATCTATTTCAAGCGTTGTGTTACTGAAATATCGCCAT
ACACAGCTTAGGTTGAGGCTTCAGTGAACACCCTTCACCCCTCAAGTATC
TGGTGTTGATGTTCCTTGTGGCGGCAACCGCCAAGTTCATACAAAATCAA
AAGCTCCCCCCAGTTGATTACGGTGGCTAAATTTGCAAAGCCGCAATCTC
AATTGAAGCTTGTTCCATCGTTCTTGGTTATCCAATGCAGGGGGAGCTGC
AGCAAATGGGAATATGTATCTATCTAAAGTTATATGATAATGCTCACAAT
TGAACGAATTGGGCTACAGCTTACAGCAGCGCCCGCCAACCGACGCCCGT
AGGAACCACCGGTAGGAACGTCGAACTTCAACCACATGGAATGCCCGGGG
ACTGCGATGGAAGTAAGCTTGAAGTTAACTACTTCTAGCGAGCATCCATC
CCAACTTGTGGAACGCGTATAAACAGCTCGTAACGAGTGGGCAACGTCTG
TCAGAGCCGCACTACCATCGAAACAAGCGCCACTCATGTCTTTATTCAAT
CCGCCTCCCGGACGCATTGGCAACGAACGACCTTGTTTTCCATGTGCATT
CTTAGTTTTATCTTGTACCGTATCAATACATGTGCTAATGAAAAGCTGTC
ACCAACAGCTTGATTTGTTTGCCCTCCCACCCTTGTAAAAGCTTCCTCAT
CGGGGCTATCGGAACTCAAACTTCAACCACAGCCACAACAACATGTATGC
TTCAATACGCTTCCGTATTGTTTCCCGCACCCATTCTTTACTCTTATTCG
CAATCACCTCTACTTTCACCGCAACTGTTCATTGAACAGAAACAACAGTT
TGGCACAGGCACATGTACGACGGTACCAAGGTGGTATCTACACGCCATTT
ACCGTACGGTGGTATGGATATACTACGAGTACAAACGTCAAACGCTATGT
ACTGTAGTCGGTGTCAGCCACCTCAAGTCAAAAACAACTAAGAGACTTGA
GTTTCAGTACATAGACCTCCAATATGCATCCGCCACACGTTAAAACTCGC
TTCTTTTGTATTTTGCTGCTCTCATGTCTCAGTTGTTCCACATCCGGCGC
CATAGATACATGGGACACGCTAGCATCGGTCTCGCGTTCTGGATCTTGGT
CCGCTGGTAGACAAAAATGGACGTTTGCTTCGTGAGAACACTACTCTTCT
AGAACTCCACAACGTAAACAGCGAAAAACGAGTTGCAAGTGGTTTTGATG
AACTCACAACATCACTCAAATCTGCCATTGCAGCTGGGGGTGGCTTCGCG
GCCTTCAAAACCACCATTGCAACGCACTACGAGTTCGAAACCACTCAGCG
TACAGACTACTTCTTTTCTCGTGTAGCCGCAGTCACTCAGCGCGGCCAAG
TTCGCCTGCAGCGCTTCTCTGCGGCTGATCTCGAAGAGCTTGTTTATCCT
AACGTGTCGAGCTTCCTTGCCTCTTCCGCACCTCAACAAATCTTCTCAAC
GTATGGTACGCATGTCACCACCGGGCTTGTATTCGGCGGAATGTTGCAGT
TGTGGTATCAGTGGAAGGACTGATTGTCAAAGGCGGAACACTTGTAATGG
GGGACGATGCTGAATCGGAGTGGATTCAATCTACAACTTCCAACTCTCAA
GCCATTCAGTTCTTGCCGGACGGTGTGATTCCAATATGGCAATTGATTCC
CAATGCTACCCAATCAAAGCGTGTAAAGGAGCACTATGACCAAGTATTTG
GAGCGATGTCAATGATTCTGAAGAGATTTGAAAGCCCTGCACTCAACTCT
GTAGGTCGAGTTCCGCATCCAGAAGCACAAGTATATGTACCGAAAGGTTG
GAAGGTGATCAGTGGGGGCGCGAAAGTACAGTTTTATGGGTCTGGTCAGT
TGCTAACCAGATCTTATCCGATTGTAGAAGACGGAAACCCGGTAGGATGG
ATGGCTCAATCGAAAGACCACATCAAATCAGACATTGGAAAGATTCAAGC
GTTCGCTATTGGGCTATGGGATCCATTTGACTCCTGGAGTGTAATTGTCC
GGCAGTCAACATCATCAACCACAGCCCATCCGAGTACCACTGCGTATTTA
CCGTCAAACGCGGGCTACGAACGAACGGGCGGCGGGGCAAATGCCCTGTG
GAAGAGTGCAGGAAGTATGTTGGTGGCAAGTGCTCTAACGGAGCGCTCTC
CTATGGGATGGACTGCTGGTTCAATGGATCATATCAGATCCGAACCAGTG
CGGATAAAAGCATATGTGATTGGAATGAAGCGTAGCGCAAAGGAAAACCC
GTTTGTTCGCACTAGGTGGGTGAGGTTTGGTCCCGCCCAGCATCCTTCTG
GCACAACTCATGCGACGCATGGATGCTCGTTTGTGGGTGGGGGAGCGAAA
GTTTCAAGAGGAGGACCTGGCAACTTCTTGGTCAACGCTTTCCCGAGCTC
GGACGGAGAAACGTTTTCATGTACCGCAAAAGACCATTTGCGAACAGATT
TCCGGTATCTCACGGTTTACGGAATAGAGGCAGAAGGAGCACTCTATGTG
AATGATATTGAAGATACGCTTGGATTTGATCCAACTGTTCGTTTCGAACC
GAAAGTTTCGGTTCGAAACAAATCATAA
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Coding sequence (CDS) from alignment at tig00000207_pilon:86375..89802+

>Ggra11088.t1 ID=Ggra11088.t1|Name=Ggra11088.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1704bp|location=Sequence derived from alignment at tig00000207_pilon:86375..89802+ (Gracilaria gracilis GNS1m male)
ATGATGGCGACGCAAGCGACCGAGCGCGCGTCGCAAGCCGCCGTGCGTCG
CGCCGCGCTCGTGTGCGACGCGCTGCGCGAGCACACGCGCTGCGCGGCGT
GCGGCGCGCTTCGCCTGCACGAGCGCCCGTTCCGCTCGCTGGTGTGCGGC
CATTCGTTCTGCGAACGCTGCGCCACGATTGCGCGCGGGGACGACCACGC
GCGTCAGACGCGCGTGGGCGAGTGTCCCATCGCTGAGTGCGCGCGGCATG
TTCGTCCGGCCGATGTGGTGGAGGACGTCGACAAAAATGGACGTTTGCTT
CGTGAGAACACTACTCTTCTAGAACTCCACAACGTAAACAGCGAAAAACG
AGTTGCAAGTGGTTTTGATGAACTCACAACATCACTCAAATCTGCCATTG
CAGCTGGGGGTGGCTTCGCGGCCTTCAAAACCACCATTGCAACGCACTAC
GAGTTCGAAACCACTCAGCGTACAGACTACTTCTTTTCTCGTGTAGCCGC
AGTCACTCAGCGCGGCCAAGTTCGCCTGCAGCGCTTCTCTGCGGCTGATC
TCGAAGAGCTTGTTTATCCTAACGTGTCGAGCTTCCTTGCCTCTTCCGCA
CCTCAACAAATCTTCTCAACGTATGTTGTGGTATCAGTGGAAGGACTGAT
TGTCAAAGGCGGAACACTTGTAATGGGGGACGATGCTGAATCGGAGTGGA
TTCAATCTACAACTTCCAACTCTCAAGCCATTCAGTTCTTGCCGGACGGT
GTGATTCCAATATGGCAATTGATTCCCAATGCTACCCAATCAAAGCGTGT
AAAGGAGCACTATGACCAAGTATTTGGAGCGATGTCAATGATTCTGAAGA
GATTTGAAAGCCCTGCACTCAACTCTGTAGGTCGAGTTCCGCATCCAGAA
GCACAAGTATATGTACCGAAAGGTTGGAAGGTGATCAGTGGGGGCGCGAA
AGTACAGTTTTATGGGTCTGGTCAGTTGCTAACCAGATCTTATCCGATTG
TAGAAGACGGAAACCCGGTAGGATGGATGGCTCAATCGAAAGACCACATC
AAATCAGACATTGGAAAGATTCAAGCGTTCGCTATTGGGCTATGGGATCC
ATTTGACTCCTGGAGTGTAATTGTCCGGCAGTCAACATCATCAACCACAG
CCCATCCGAGTACCACTGCGTATTTACCGTCAAACGCGGGCTACGAACGA
ACGGGCGGCGGGGCAAATGCCCTGTGGAAGAGTGCAGGAAGTATGTTGGT
GGCAAGTGCTCTAACGGAGCGCTCTCCTATGGGATGGACTGCTGGTTCAA
TGGATCATATCAGATCCGAACCAGTGCGGATAAAAGCATATGTGATTGGA
ATGAAGCGTAGCGCAAAGGAAAACCCGTTTGTTCGCACTAGGTGGGTGAG
GTTTGGTCCCGCCCAGCATCCTTCTGGCACAACTCATGCGACGCATGGAT
GCTCGTTTGTGGGTGGGGGAGCGAAAGTTTCAAGAGGAGGACCTGGCAAC
TTCTTGGTCAACGCTTTCCCGAGCTCGGACGGAGAAACGTTTTCATGTAC
CGCAAAAGACCATTTGCGAACAGATTTCCGGTATCTCACGGTTTACGGAA
TAGAGGCAGAAGGAGCACTCTATGTGAATGATATTGAAGATACGCTTGGA
TTTGATCCAACTGTTCGTTTCGAACCGAAAGTTTCGGTTCGAAACAAATC
ATAA
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