Ggra11098.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra11098.t1
Unique Name	Ggra11098.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	817

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000207_pilon	contig	tig00000207_pilon:125531..127981 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708800.1
PFAMs	PPR_2,PPR_3
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K17710
Evalue	1.25e-07
EggNOG OGs	KOG4197@1\|root,KOG4197@2759\|Eukaryota
Description	endonuclease activity
COG category	S
BRITE	ko00000,ko03016,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra11098	Ggra11098	Gracilaria gracilis GNS1m male	gene	tig00000207_pilon 125531..127981 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11098.t1.stop1	Ggra11098.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000207_pilon 125531..125533 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11098.t1.CDS1	Ggra11098.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000207_pilon 125531..127981 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11098.t1.exon1	Ggra11098.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000207_pilon 125531..127981 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11098.t1.start1	Ggra11098.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000207_pilon 127979..127981 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11098.t1	Ggra11098.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000207_pilon 125531..127981 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000207_pilon:125531..127981-
coding sequence from alignment at tig00000207_pilon:125531..127981-

mRNA sequence

>Ggra11098.t1 ID=Ggra11098.t1|Name=Ggra11098.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=817bp
MRTYVGRTALRGATQLLSGGSTRGAVLVGRTAIASKSLCTTTSLQNDGSR
ITEDLQISGNEKLQISPETAASASAQDESVVEIISEDVSAPSAAAGEELG
DPVGNLVEPMGGEVIEPLEQTGSSPNAASPSSNRDPVAFAASLKSLLKSG
AVRTALWQYVNAMKTSDRSQIDEGVVSLMLPVLGRSGWAPTSLDTLNLAI
EREYDIGIGLYNCGLHAVSRSAQTDPMRKIIDAMWTLPKESHPNATTYNY
LIGAYMYRGHVDNAFNVLNEMKDSLIYPTFATYHALITGCLRRRDSQRAF
STLMAVEKQRFDISAMTVSQVLVSAANNDDFDNVRELLTKFESALPIYVS
EVHRIAESRNMYRIGKHTRTTKEERAAMRGTAKLEIGAISDVLHCAFRGG
LADVALRAWQIMEEQYPEYQPPASFWYCLIGSFAGVGDFTTALDVVGVMR
ERGLTVRLRDLDIAFVRPLASDIDNIDAQYYRLIDRLESTEQSSGGHTEG
SETGSEEPEGLEASELKNEESDSSDADEIEAADQDQSPQEREVTAPELSQ
SVPEGFEREVTAPELSQSVSEGFEREVTAPELSQSVPEGFELPEASKAFI
RTRLTPTTIGIEEVNCVIAACSSAQDLERAFQTYDEIGSRFKMEKNIDTF
NALLEGCVQTRHIRGGMRVLQEMESHGFSLSGQTLHLAVRLMIRGGKTET
TVHMLEEAQRRGDIISPSTYQMLVRHFLRNEDNTRAMRVFKLGEEAGLTE
RAMTGRLGYNAYEQVKKLRMQSETYESSTASSSDVQGDQAVMGDEDGETV
VGGLEDVDDGEEVVKH*

spliced messenger RNA

>Ggra11098.t1 ID=Ggra11098.t1|Name=Ggra11098.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2451bp|location=Sequence derived from alignment at tig00000207_pilon:125531..127981- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTACCTATGTCGGAAGAACCGCCCTTCGTGGCGCCACACAGCTTCT
TTCAGGCGGTTCCACTCGGGGCGCTGTTTTAGTTGGTCGCACTGCTATTG
CATCCAAGTCATTATGCACAACCACCTCGCTTCAAAACGATGGAAGTCGA
ATAACGGAGGATTTGCAAATATCTGGAAACGAGAAGCTGCAGATTTCCCC
AGAGACTGCTGCTAGCGCTTCCGCTCAGGACGAATCTGTCGTGGAAATCA
TATCAGAAGATGTCTCTGCACCGTCTGCAGCTGCAGGCGAAGAACTTGGG
GATCCTGTAGGTAATTTGGTGGAACCTATGGGAGGCGAGGTGATCGAGCC
TCTTGAGCAGACCGGGTCTTCGCCAAACGCAGCCAGTCCTAGTTCCAACC
GTGATCCGGTTGCCTTTGCTGCCTCTCTCAAATCGCTGCTGAAAAGTGGC
GCCGTTCGTACAGCCTTGTGGCAGTACGTAAACGCCATGAAGACCTCTGA
TCGCTCTCAGATCGATGAAGGGGTTGTATCGCTGATGCTTCCCGTTCTTG
GGAGATCTGGCTGGGCGCCTACATCGCTCGACACGCTTAACCTTGCCATT
GAAAGGGAATATGATATTGGAATTGGTCTTTACAATTGCGGATTGCATGC
TGTTTCACGATCGGCTCAAACCGACCCCATGAGGAAGATCATTGACGCGA
TGTGGACGCTTCCAAAGGAATCACATCCGAATGCCACTACCTACAACTAT
TTGATTGGTGCTTATATGTACCGTGGACATGTCGATAATGCGTTTAACGT
ACTTAACGAAATGAAGGACAGTCTAATATATCCTACTTTTGCAACCTACC
ATGCTTTAATAACTGGTTGCCTTCGCCGTCGCGATTCACAAAGAGCGTTT
TCAACCTTAATGGCGGTCGAGAAACAACGTTTTGACATTAGTGCCATGAC
TGTTTCGCAAGTGCTTGTTTCTGCAGCTAACAATGATGATTTCGACAATG
TCAGAGAGCTTTTGACGAAGTTCGAGTCAGCGCTTCCAATATATGTTTCA
GAAGTGCATCGTATAGCCGAGTCGCGCAACATGTATCGTATTGGCAAACA
CACACGCACCACAAAGGAGGAAAGAGCTGCCATGAGAGGCACAGCTAAAC
TGGAGATCGGGGCCATATCTGATGTGCTTCATTGCGCATTCAGAGGTGGA
CTTGCGGATGTAGCTTTGCGTGCATGGCAGATTATGGAGGAACAGTATCC
AGAGTATCAGCCTCCTGCCTCGTTTTGGTACTGTTTGATTGGTTCATTTG
CAGGCGTCGGTGACTTTACGACGGCTTTGGATGTGGTTGGGGTGATGCGA
GAGAGGGGTCTGACTGTTAGATTGCGAGACCTGGACATTGCGTTTGTTCG
TCCGTTGGCATCTGACATTGATAATATTGATGCGCAGTATTACAGACTTA
TTGACAGACTTGAAAGCACAGAGCAGAGCAGTGGGGGACACACTGAAGGA
AGCGAGACCGGCTCAGAAGAACCGGAAGGACTCGAAGCTAGCGAATTGAA
GAATGAGGAAAGCGATTCGTCGGATGCAGATGAGATAGAAGCCGCTGACC
AAGATCAGAGTCCGCAGGAGCGCGAAGTGACAGCTCCGGAGCTTTCTCAA
AGTGTTCCCGAAGGGTTTGAACGCGAAGTGACAGCTCCGGAGCTTTCTCA
AAGTGTTTCCGAAGGGTTTGAACGCGAAGTGACAGCTCCGGAGCTTTCTC
AAAGTGTTCCCGAAGGGTTTGAACTCCCCGAAGCCTCGAAGGCTTTCATT
CGAACAAGACTTACGCCAACCACCATTGGTATTGAAGAGGTTAACTGTGT
GATCGCGGCATGTTCATCGGCTCAAGATCTTGAAAGAGCATTCCAAACCT
ATGATGAAATAGGGTCTCGATTCAAGATGGAGAAGAATATTGATACCTTC
AACGCTTTACTCGAAGGATGCGTTCAAACAAGACACATTCGTGGTGGTAT
GAGGGTGTTGCAGGAAATGGAAAGTCATGGATTCAGCTTGAGTGGACAAA
CTCTGCACCTTGCAGTGCGACTGATGATTCGAGGGGGCAAAACAGAGACA
ACAGTACATATGCTTGAAGAGGCTCAGCGAAGAGGAGATATTATATCACC
TTCCACATATCAGATGTTAGTAAGACATTTCTTGCGAAATGAAGACAATA
CTCGAGCCATGAGAGTGTTTAAATTAGGTGAAGAGGCGGGGCTCACCGAA
AGGGCCATGACAGGGCGACTTGGCTACAATGCATATGAACAAGTGAAAAA
ACTGAGAATGCAGAGCGAAACATATGAGAGTTCCACGGCGTCAAGCAGTG
ATGTTCAAGGCGATCAGGCGGTGATGGGAGATGAGGACGGTGAAACTGTT
GTGGGTGGTCTTGAGGACGTGGATGATGGGGAGGAGGTGGTGAAGCATTA
G

protein sequence of Ggra11098.t1

>Ggra11098.t1 ID=Ggra11098.t1|Name=Ggra11098.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=817bp
MRTYVGRTALRGATQLLSGGSTRGAVLVGRTAIASKSLCTTTSLQNDGSR
ITEDLQISGNEKLQISPETAASASAQDESVVEIISEDVSAPSAAAGEELG
DPVGNLVEPMGGEVIEPLEQTGSSPNAASPSSNRDPVAFAASLKSLLKSG
AVRTALWQYVNAMKTSDRSQIDEGVVSLMLPVLGRSGWAPTSLDTLNLAI
EREYDIGIGLYNCGLHAVSRSAQTDPMRKIIDAMWTLPKESHPNATTYNY
LIGAYMYRGHVDNAFNVLNEMKDSLIYPTFATYHALITGCLRRRDSQRAF
STLMAVEKQRFDISAMTVSQVLVSAANNDDFDNVRELLTKFESALPIYVS
EVHRIAESRNMYRIGKHTRTTKEERAAMRGTAKLEIGAISDVLHCAFRGG
LADVALRAWQIMEEQYPEYQPPASFWYCLIGSFAGVGDFTTALDVVGVMR
ERGLTVRLRDLDIAFVRPLASDIDNIDAQYYRLIDRLESTEQSSGGHTEG
SETGSEEPEGLEASELKNEESDSSDADEIEAADQDQSPQEREVTAPELSQ
SVPEGFEREVTAPELSQSVSEGFEREVTAPELSQSVPEGFELPEASKAFI
RTRLTPTTIGIEEVNCVIAACSSAQDLERAFQTYDEIGSRFKMEKNIDTF
NALLEGCVQTRHIRGGMRVLQEMESHGFSLSGQTLHLAVRLMIRGGKTET
TVHMLEEAQRRGDIISPSTYQMLVRHFLRNEDNTRAMRVFKLGEEAGLTE
RAMTGRLGYNAYEQVKKLRMQSETYESSTASSSDVQGDQAVMGDEDGETV
VGGLEDVDDGEEVVKH*

mRNA from alignment at tig00000207_pilon:125531..127981-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra11098.t1 ID=Ggra11098.t1|Name=Ggra11098.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2451bp|location=Sequence derived from alignment at tig00000207_pilon:125531..127981- (Gracilaria gracilis GNS1m male)
ATGCGTACCTATGTCGGAAGAACCGCCCTTCGTGGCGCCACACAGCTTCT
TTCAGGCGGTTCCACTCGGGGCGCTGTTTTAGTTGGTCGCACTGCTATTG
CATCCAAGTCATTATGCACAACCACCTCGCTTCAAAACGATGGAAGTCGA
ATAACGGAGGATTTGCAAATATCTGGAAACGAGAAGCTGCAGATTTCCCC
AGAGACTGCTGCTAGCGCTTCCGCTCAGGACGAATCTGTCGTGGAAATCA
TATCAGAAGATGTCTCTGCACCGTCTGCAGCTGCAGGCGAAGAACTTGGG
GATCCTGTAGGTAATTTGGTGGAACCTATGGGAGGCGAGGTGATCGAGCC
TCTTGAGCAGACCGGGTCTTCGCCAAACGCAGCCAGTCCTAGTTCCAACC
GTGATCCGGTTGCCTTTGCTGCCTCTCTCAAATCGCTGCTGAAAAGTGGC
GCCGTTCGTACAGCCTTGTGGCAGTACGTAAACGCCATGAAGACCTCTGA
TCGCTCTCAGATCGATGAAGGGGTTGTATCGCTGATGCTTCCCGTTCTTG
GGAGATCTGGCTGGGCGCCTACATCGCTCGACACGCTTAACCTTGCCATT
GAAAGGGAATATGATATTGGAATTGGTCTTTACAATTGCGGATTGCATGC
TGTTTCACGATCGGCTCAAACCGACCCCATGAGGAAGATCATTGACGCGA
TGTGGACGCTTCCAAAGGAATCACATCCGAATGCCACTACCTACAACTAT
TTGATTGGTGCTTATATGTACCGTGGACATGTCGATAATGCGTTTAACGT
ACTTAACGAAATGAAGGACAGTCTAATATATCCTACTTTTGCAACCTACC
ATGCTTTAATAACTGGTTGCCTTCGCCGTCGCGATTCACAAAGAGCGTTT
TCAACCTTAATGGCGGTCGAGAAACAACGTTTTGACATTAGTGCCATGAC
TGTTTCGCAAGTGCTTGTTTCTGCAGCTAACAATGATGATTTCGACAATG
TCAGAGAGCTTTTGACGAAGTTCGAGTCAGCGCTTCCAATATATGTTTCA
GAAGTGCATCGTATAGCCGAGTCGCGCAACATGTATCGTATTGGCAAACA
CACACGCACCACAAAGGAGGAAAGAGCTGCCATGAGAGGCACAGCTAAAC
TGGAGATCGGGGCCATATCTGATGTGCTTCATTGCGCATTCAGAGGTGGA
CTTGCGGATGTAGCTTTGCGTGCATGGCAGATTATGGAGGAACAGTATCC
AGAGTATCAGCCTCCTGCCTCGTTTTGGTACTGTTTGATTGGTTCATTTG
CAGGCGTCGGTGACTTTACGACGGCTTTGGATGTGGTTGGGGTGATGCGA
GAGAGGGGTCTGACTGTTAGATTGCGAGACCTGGACATTGCGTTTGTTCG
TCCGTTGGCATCTGACATTGATAATATTGATGCGCAGTATTACAGACTTA
TTGACAGACTTGAAAGCACAGAGCAGAGCAGTGGGGGACACACTGAAGGA
AGCGAGACCGGCTCAGAAGAACCGGAAGGACTCGAAGCTAGCGAATTGAA
GAATGAGGAAAGCGATTCGTCGGATGCAGATGAGATAGAAGCCGCTGACC
AAGATCAGAGTCCGCAGGAGCGCGAAGTGACAGCTCCGGAGCTTTCTCAA
AGTGTTCCCGAAGGGTTTGAACGCGAAGTGACAGCTCCGGAGCTTTCTCA
AAGTGTTTCCGAAGGGTTTGAACGCGAAGTGACAGCTCCGGAGCTTTCTC
AAAGTGTTCCCGAAGGGTTTGAACTCCCCGAAGCCTCGAAGGCTTTCATT
CGAACAAGACTTACGCCAACCACCATTGGTATTGAAGAGGTTAACTGTGT
GATCGCGGCATGTTCATCGGCTCAAGATCTTGAAAGAGCATTCCAAACCT
ATGATGAAATAGGGTCTCGATTCAAGATGGAGAAGAATATTGATACCTTC
AACGCTTTACTCGAAGGATGCGTTCAAACAAGACACATTCGTGGTGGTAT
GAGGGTGTTGCAGGAAATGGAAAGTCATGGATTCAGCTTGAGTGGACAAA
CTCTGCACCTTGCAGTGCGACTGATGATTCGAGGGGGCAAAACAGAGACA
ACAGTACATATGCTTGAAGAGGCTCAGCGAAGAGGAGATATTATATCACC
TTCCACATATCAGATGTTAGTAAGACATTTCTTGCGAAATGAAGACAATA
CTCGAGCCATGAGAGTGTTTAAATTAGGTGAAGAGGCGGGGCTCACCGAA
AGGGCCATGACAGGGCGACTTGGCTACAATGCATATGAACAAGTGAAAAA
ACTGAGAATGCAGAGCGAAACATATGAGAGTTCCACGGCGTCAAGCAGTG
ATGTTCAAGGCGATCAGGCGGTGATGGGAGATGAGGACGGTGAAACTGTT
GTGGGTGGTCTTGAGGACGTGGATGATGGGGAGGAGGTGGTGAAGCATTA
G

Coding sequence (CDS) from alignment at tig00000207_pilon:125531..127981-

>Ggra11098.t1 ID=Ggra11098.t1|Name=Ggra11098.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2451bp|location=Sequence derived from alignment at tig00000207_pilon:125531..127981- (Gracilaria gracilis GNS1m male)
ATGCGTACCTATGTCGGAAGAACCGCCCTTCGTGGCGCCACACAGCTTCT
TTCAGGCGGTTCCACTCGGGGCGCTGTTTTAGTTGGTCGCACTGCTATTG
CATCCAAGTCATTATGCACAACCACCTCGCTTCAAAACGATGGAAGTCGA
ATAACGGAGGATTTGCAAATATCTGGAAACGAGAAGCTGCAGATTTCCCC
AGAGACTGCTGCTAGCGCTTCCGCTCAGGACGAATCTGTCGTGGAAATCA
TATCAGAAGATGTCTCTGCACCGTCTGCAGCTGCAGGCGAAGAACTTGGG
GATCCTGTAGGTAATTTGGTGGAACCTATGGGAGGCGAGGTGATCGAGCC
TCTTGAGCAGACCGGGTCTTCGCCAAACGCAGCCAGTCCTAGTTCCAACC
GTGATCCGGTTGCCTTTGCTGCCTCTCTCAAATCGCTGCTGAAAAGTGGC
GCCGTTCGTACAGCCTTGTGGCAGTACGTAAACGCCATGAAGACCTCTGA
TCGCTCTCAGATCGATGAAGGGGTTGTATCGCTGATGCTTCCCGTTCTTG
GGAGATCTGGCTGGGCGCCTACATCGCTCGACACGCTTAACCTTGCCATT
GAAAGGGAATATGATATTGGAATTGGTCTTTACAATTGCGGATTGCATGC
TGTTTCACGATCGGCTCAAACCGACCCCATGAGGAAGATCATTGACGCGA
TGTGGACGCTTCCAAAGGAATCACATCCGAATGCCACTACCTACAACTAT
TTGATTGGTGCTTATATGTACCGTGGACATGTCGATAATGCGTTTAACGT
ACTTAACGAAATGAAGGACAGTCTAATATATCCTACTTTTGCAACCTACC
ATGCTTTAATAACTGGTTGCCTTCGCCGTCGCGATTCACAAAGAGCGTTT
TCAACCTTAATGGCGGTCGAGAAACAACGTTTTGACATTAGTGCCATGAC
TGTTTCGCAAGTGCTTGTTTCTGCAGCTAACAATGATGATTTCGACAATG
TCAGAGAGCTTTTGACGAAGTTCGAGTCAGCGCTTCCAATATATGTTTCA
GAAGTGCATCGTATAGCCGAGTCGCGCAACATGTATCGTATTGGCAAACA
CACACGCACCACAAAGGAGGAAAGAGCTGCCATGAGAGGCACAGCTAAAC
TGGAGATCGGGGCCATATCTGATGTGCTTCATTGCGCATTCAGAGGTGGA
CTTGCGGATGTAGCTTTGCGTGCATGGCAGATTATGGAGGAACAGTATCC
AGAGTATCAGCCTCCTGCCTCGTTTTGGTACTGTTTGATTGGTTCATTTG
CAGGCGTCGGTGACTTTACGACGGCTTTGGATGTGGTTGGGGTGATGCGA
GAGAGGGGTCTGACTGTTAGATTGCGAGACCTGGACATTGCGTTTGTTCG
TCCGTTGGCATCTGACATTGATAATATTGATGCGCAGTATTACAGACTTA
TTGACAGACTTGAAAGCACAGAGCAGAGCAGTGGGGGACACACTGAAGGA
AGCGAGACCGGCTCAGAAGAACCGGAAGGACTCGAAGCTAGCGAATTGAA
GAATGAGGAAAGCGATTCGTCGGATGCAGATGAGATAGAAGCCGCTGACC
AAGATCAGAGTCCGCAGGAGCGCGAAGTGACAGCTCCGGAGCTTTCTCAA
AGTGTTCCCGAAGGGTTTGAACGCGAAGTGACAGCTCCGGAGCTTTCTCA
AAGTGTTTCCGAAGGGTTTGAACGCGAAGTGACAGCTCCGGAGCTTTCTC
AAAGTGTTCCCGAAGGGTTTGAACTCCCCGAAGCCTCGAAGGCTTTCATT
CGAACAAGACTTACGCCAACCACCATTGGTATTGAAGAGGTTAACTGTGT
GATCGCGGCATGTTCATCGGCTCAAGATCTTGAAAGAGCATTCCAAACCT
ATGATGAAATAGGGTCTCGATTCAAGATGGAGAAGAATATTGATACCTTC
AACGCTTTACTCGAAGGATGCGTTCAAACAAGACACATTCGTGGTGGTAT
GAGGGTGTTGCAGGAAATGGAAAGTCATGGATTCAGCTTGAGTGGACAAA
CTCTGCACCTTGCAGTGCGACTGATGATTCGAGGGGGCAAAACAGAGACA
ACAGTACATATGCTTGAAGAGGCTCAGCGAAGAGGAGATATTATATCACC
TTCCACATATCAGATGTTAGTAAGACATTTCTTGCGAAATGAAGACAATA
CTCGAGCCATGAGAGTGTTTAAATTAGGTGAAGAGGCGGGGCTCACCGAA
AGGGCCATGACAGGGCGACTTGGCTACAATGCATATGAACAAGTGAAAAA
ACTGAGAATGCAGAGCGAAACATATGAGAGTTCCACGGCGTCAAGCAGTG
ATGTTCAAGGCGATCAGGCGGTGATGGGAGATGAGGACGGTGAAACTGTT
GTGGGTGGTCTTGAGGACGTGGATGATGGGGAGGAGGTGGTGAAGCATTA
G