Ggra11064.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra11064.t1
Unique Name	Ggra11064.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	756

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000207_pilon	contig	tig00000207_pilon:21522..23789 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	88036.EFJ21093
PFAMs	CBF,NOC3p
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K14834
Evalue	1.54e-30
EggNOG OGs	COG5117@1\|root,KOG2153@2759\|Eukaryota,37J9B@33090\|Viridiplantae,3GDPR@35493\|Streptophyta
Description	Nucleolar complex protein 3 homolog
COG category	JU
BRITE	ko00000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra11064	Ggra11064	Gracilaria gracilis GNS1m male	gene	tig00000207_pilon 21522..23789 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11064.t1.stop1	Ggra11064.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000207_pilon 21522..21524 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11064.t1.CDS1	Ggra11064.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000207_pilon 21522..23789 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11064.t1.exon1	Ggra11064.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000207_pilon 21522..23789 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11064.t1.start1	Ggra11064.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000207_pilon 23787..23789 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11064.t1	Ggra11064.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000207_pilon 21522..23789 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000207_pilon:21522..23789-
coding sequence from alignment at tig00000207_pilon:21522..23789-

mRNA sequence

>Ggra11064.t1 ID=Ggra11064.t1|Name=Ggra11064.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=756bp
MTRRRRKNKNVQKAPAWEVSRTFANPERQSLPLPVVQPDGIVKKAQLSRP
KFIAKAKTKKEKKVLIEQVLNDFREDGNPDANENSDRGEKRSRKRPRHAL
EKYAEQIEKIETIKVNIASMASRITSNPEESVSLLRELRSMGRDSKGKVA
ALILLTESQVYKDIAPGYRIRRITEKEAETKVSKETKRLRDFEEALLSSY
QRFVKSCISLSNWRFSGTRHTHASQNMTKVRFAACKALSELLRSLPHFNE
AEVIANMVCTHVCNQEAEIRKLCSRALSAVLRNAHRASGNTLELCVSIAK
NLAKVAGKKKRSAPAELVAPLTEIQFANFARLPTSSKSKKEQAKGSKRLS
KVKRKRLMKQEKHAVDEKEVEKDMREGDAEATSQELFGAKKSLLNSVCHA
YFNIIRAASIDVDTIEEVKQNKPKPKKRKPPTALSPALKGLLRISMFIST
DIIDAILGALTPLLETGQLPLSNRFRCLSAAYAVLGVHARSQKVSADSFT
GDTRALDTALYTAIGALYTSEMPLREDESITFDAIEAVVASTSFRDMPVA
RCAALARRLAIAATNAPVHSCTIALLYAAQILMPSSIVSPIFAQLDENNE
MRVIDDVGLVQNFNMETDDPDISAAERSASWELCPLANSFHPTVREIAKQ
CAAGSCGSRLAKSTASIVVKAKAFSNAQGGFNPPPQPALRGNRKRHRTET
EQLVEHQRLLSEQEGRLIEKELGNDETNMEDFLLAQWHSREVNKRDEGQH
TWGKQ*

spliced messenger RNA

>Ggra11064.t1 ID=Ggra11064.t1|Name=Ggra11064.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2268bp|location=Sequence derived from alignment at tig00000207_pilon:21522..23789- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCAGAAGACGTAGGAAGAACAAAAATGTACAAAAGGCTCCTGCATG
GGAGGTTTCGAGAACGTTTGCGAACCCGGAACGTCAATCTCTTCCACTAC
CTGTTGTTCAGCCTGACGGAATCGTGAAAAAGGCGCAACTATCTCGCCCA
AAATTCATTGCCAAGGCAAAGACTAAAAAGGAAAAGAAGGTACTCATTGA
ACAGGTTTTGAACGATTTCAGAGAAGATGGAAATCCAGACGCAAACGAGA
ATAGTGATCGAGGCGAAAAGAGATCGCGAAAGCGTCCTCGTCACGCCCTC
GAGAAGTACGCGGAACAGATAGAGAAGATAGAGACGATCAAAGTCAACAT
TGCTTCCATGGCATCCAGAATCACTTCTAACCCAGAGGAGAGTGTTTCGT
TGTTGCGGGAACTTCGTTCAATGGGGCGCGATTCCAAGGGCAAAGTCGCT
GCGCTAATTCTGCTCACAGAATCCCAGGTTTACAAGGACATAGCCCCAGG
CTATAGAATACGTCGGATAACAGAGAAAGAAGCGGAAACTAAAGTATCAA
AAGAGACGAAGCGTTTGCGAGACTTTGAAGAGGCTCTTCTTTCAAGCTAC
CAACGTTTCGTAAAATCATGCATCAGTCTTTCAAACTGGAGGTTTTCGGG
CACTAGGCATACACATGCAAGTCAAAATATGACCAAGGTTCGTTTCGCCG
CATGTAAGGCCTTGTCAGAGCTCCTTCGCTCATTGCCACATTTCAACGAA
GCAGAAGTTATCGCTAATATGGTTTGTACTCATGTATGCAATCAAGAGGC
TGAGATTCGGAAACTGTGTTCACGAGCACTTTCGGCAGTACTACGGAACG
CTCACCGAGCATCAGGAAACACTCTCGAGCTATGTGTTTCGATTGCAAAG
AATCTCGCTAAAGTTGCTGGGAAAAAGAAGCGATCAGCACCGGCAGAACT
CGTTGCCCCACTCACCGAAATCCAGTTTGCAAACTTTGCCCGTCTTCCAA
CGTCCAGCAAGTCAAAGAAAGAACAGGCAAAGGGTTCTAAGCGACTGAGC
AAAGTGAAGCGAAAGCGCTTGATGAAACAGGAGAAACATGCAGTTGATGA
GAAGGAAGTCGAGAAGGACATGCGCGAGGGGGATGCGGAAGCGACTTCAC
AGGAGCTTTTCGGTGCAAAAAAAAGCTTGTTAAATTCTGTGTGTCATGCC
TACTTCAATATAATCCGTGCGGCTTCGATTGACGTGGACACTATAGAAGA
AGTGAAACAAAATAAGCCGAAGCCCAAGAAGCGGAAACCTCCGACAGCGC
TTTCACCGGCATTGAAAGGTCTGCTAAGAATATCTATGTTCATCAGCACA
GATATCATTGATGCGATTCTAGGAGCCTTAACGCCACTGCTCGAAACTGG
ACAGTTACCGCTCAGCAATCGATTCCGTTGCCTTTCTGCTGCATACGCTG
TTTTGGGAGTGCATGCACGATCTCAGAAAGTCAGTGCCGATTCTTTTACT
GGAGACACCAGAGCACTTGATACCGCGCTCTATACAGCCATAGGAGCGTT
ATACACGTCAGAAATGCCCCTACGGGAAGACGAATCAATAACATTTGACG
CGATTGAAGCGGTCGTAGCGTCAACAAGTTTTCGTGATATGCCTGTTGCA
AGATGTGCGGCGCTTGCAAGAAGACTGGCCATTGCCGCAACAAACGCACC
CGTTCATTCCTGCACCATTGCGCTCCTCTATGCGGCTCAGATACTGATGC
CCTCTTCCATTGTTTCCCCCATCTTCGCTCAACTCGATGAGAATAATGAA
ATGAGAGTGATAGATGATGTTGGACTGGTTCAGAACTTCAATATGGAAAC
TGATGATCCTGACATTTCTGCAGCGGAAAGAAGCGCTTCGTGGGAACTAT
GCCCCCTTGCTAATTCGTTCCATCCGACTGTTCGAGAAATCGCCAAACAA
TGCGCTGCCGGAAGTTGTGGGTCCAGACTTGCGAAGAGTACAGCAAGTAT
TGTTGTCAAAGCGAAGGCGTTCTCAAACGCCCAAGGGGGCTTTAATCCGC
CGCCACAGCCTGCGCTGCGCGGGAATCGAAAACGCCATCGTACGGAAACA
GAGCAGCTTGTGGAACATCAACGGTTGCTATCGGAACAAGAGGGACGACT
GATAGAGAAGGAGCTTGGAAATGATGAGACGAACATGGAGGACTTCCTCT
TGGCCCAATGGCACAGCAGAGAGGTGAATAAAAGAGACGAAGGTCAACAC
ACTTGGGGCAAACAATAA

protein sequence of Ggra11064.t1

>Ggra11064.t1 ID=Ggra11064.t1|Name=Ggra11064.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=756bp
MTRRRRKNKNVQKAPAWEVSRTFANPERQSLPLPVVQPDGIVKKAQLSRP
KFIAKAKTKKEKKVLIEQVLNDFREDGNPDANENSDRGEKRSRKRPRHAL
EKYAEQIEKIETIKVNIASMASRITSNPEESVSLLRELRSMGRDSKGKVA
ALILLTESQVYKDIAPGYRIRRITEKEAETKVSKETKRLRDFEEALLSSY
QRFVKSCISLSNWRFSGTRHTHASQNMTKVRFAACKALSELLRSLPHFNE
AEVIANMVCTHVCNQEAEIRKLCSRALSAVLRNAHRASGNTLELCVSIAK
NLAKVAGKKKRSAPAELVAPLTEIQFANFARLPTSSKSKKEQAKGSKRLS
KVKRKRLMKQEKHAVDEKEVEKDMREGDAEATSQELFGAKKSLLNSVCHA
YFNIIRAASIDVDTIEEVKQNKPKPKKRKPPTALSPALKGLLRISMFIST
DIIDAILGALTPLLETGQLPLSNRFRCLSAAYAVLGVHARSQKVSADSFT
GDTRALDTALYTAIGALYTSEMPLREDESITFDAIEAVVASTSFRDMPVA
RCAALARRLAIAATNAPVHSCTIALLYAAQILMPSSIVSPIFAQLDENNE
MRVIDDVGLVQNFNMETDDPDISAAERSASWELCPLANSFHPTVREIAKQ
CAAGSCGSRLAKSTASIVVKAKAFSNAQGGFNPPPQPALRGNRKRHRTET
EQLVEHQRLLSEQEGRLIEKELGNDETNMEDFLLAQWHSREVNKRDEGQH
TWGKQ*

mRNA from alignment at tig00000207_pilon:21522..23789-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra11064.t1 ID=Ggra11064.t1|Name=Ggra11064.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2268bp|location=Sequence derived from alignment at tig00000207_pilon:21522..23789- (Gracilaria gracilis GNS1m male)
ATGACCAGAAGACGTAGGAAGAACAAAAATGTACAAAAGGCTCCTGCATG
GGAGGTTTCGAGAACGTTTGCGAACCCGGAACGTCAATCTCTTCCACTAC
CTGTTGTTCAGCCTGACGGAATCGTGAAAAAGGCGCAACTATCTCGCCCA
AAATTCATTGCCAAGGCAAAGACTAAAAAGGAAAAGAAGGTACTCATTGA
ACAGGTTTTGAACGATTTCAGAGAAGATGGAAATCCAGACGCAAACGAGA
ATAGTGATCGAGGCGAAAAGAGATCGCGAAAGCGTCCTCGTCACGCCCTC
GAGAAGTACGCGGAACAGATAGAGAAGATAGAGACGATCAAAGTCAACAT
TGCTTCCATGGCATCCAGAATCACTTCTAACCCAGAGGAGAGTGTTTCGT
TGTTGCGGGAACTTCGTTCAATGGGGCGCGATTCCAAGGGCAAAGTCGCT
GCGCTAATTCTGCTCACAGAATCCCAGGTTTACAAGGACATAGCCCCAGG
CTATAGAATACGTCGGATAACAGAGAAAGAAGCGGAAACTAAAGTATCAA
AAGAGACGAAGCGTTTGCGAGACTTTGAAGAGGCTCTTCTTTCAAGCTAC
CAACGTTTCGTAAAATCATGCATCAGTCTTTCAAACTGGAGGTTTTCGGG
CACTAGGCATACACATGCAAGTCAAAATATGACCAAGGTTCGTTTCGCCG
CATGTAAGGCCTTGTCAGAGCTCCTTCGCTCATTGCCACATTTCAACGAA
GCAGAAGTTATCGCTAATATGGTTTGTACTCATGTATGCAATCAAGAGGC
TGAGATTCGGAAACTGTGTTCACGAGCACTTTCGGCAGTACTACGGAACG
CTCACCGAGCATCAGGAAACACTCTCGAGCTATGTGTTTCGATTGCAAAG
AATCTCGCTAAAGTTGCTGGGAAAAAGAAGCGATCAGCACCGGCAGAACT
CGTTGCCCCACTCACCGAAATCCAGTTTGCAAACTTTGCCCGTCTTCCAA
CGTCCAGCAAGTCAAAGAAAGAACAGGCAAAGGGTTCTAAGCGACTGAGC
AAAGTGAAGCGAAAGCGCTTGATGAAACAGGAGAAACATGCAGTTGATGA
GAAGGAAGTCGAGAAGGACATGCGCGAGGGGGATGCGGAAGCGACTTCAC
AGGAGCTTTTCGGTGCAAAAAAAAGCTTGTTAAATTCTGTGTGTCATGCC
TACTTCAATATAATCCGTGCGGCTTCGATTGACGTGGACACTATAGAAGA
AGTGAAACAAAATAAGCCGAAGCCCAAGAAGCGGAAACCTCCGACAGCGC
TTTCACCGGCATTGAAAGGTCTGCTAAGAATATCTATGTTCATCAGCACA
GATATCATTGATGCGATTCTAGGAGCCTTAACGCCACTGCTCGAAACTGG
ACAGTTACCGCTCAGCAATCGATTCCGTTGCCTTTCTGCTGCATACGCTG
TTTTGGGAGTGCATGCACGATCTCAGAAAGTCAGTGCCGATTCTTTTACT
GGAGACACCAGAGCACTTGATACCGCGCTCTATACAGCCATAGGAGCGTT
ATACACGTCAGAAATGCCCCTACGGGAAGACGAATCAATAACATTTGACG
CGATTGAAGCGGTCGTAGCGTCAACAAGTTTTCGTGATATGCCTGTTGCA
AGATGTGCGGCGCTTGCAAGAAGACTGGCCATTGCCGCAACAAACGCACC
CGTTCATTCCTGCACCATTGCGCTCCTCTATGCGGCTCAGATACTGATGC
CCTCTTCCATTGTTTCCCCCATCTTCGCTCAACTCGATGAGAATAATGAA
ATGAGAGTGATAGATGATGTTGGACTGGTTCAGAACTTCAATATGGAAAC
TGATGATCCTGACATTTCTGCAGCGGAAAGAAGCGCTTCGTGGGAACTAT
GCCCCCTTGCTAATTCGTTCCATCCGACTGTTCGAGAAATCGCCAAACAA
TGCGCTGCCGGAAGTTGTGGGTCCAGACTTGCGAAGAGTACAGCAAGTAT
TGTTGTCAAAGCGAAGGCGTTCTCAAACGCCCAAGGGGGCTTTAATCCGC
CGCCACAGCCTGCGCTGCGCGGGAATCGAAAACGCCATCGTACGGAAACA
GAGCAGCTTGTGGAACATCAACGGTTGCTATCGGAACAAGAGGGACGACT
GATAGAGAAGGAGCTTGGAAATGATGAGACGAACATGGAGGACTTCCTCT
TGGCCCAATGGCACAGCAGAGAGGTGAATAAAAGAGACGAAGGTCAACAC
ACTTGGGGCAAACAATAA

Coding sequence (CDS) from alignment at tig00000207_pilon:21522..23789-

>Ggra11064.t1 ID=Ggra11064.t1|Name=Ggra11064.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2268bp|location=Sequence derived from alignment at tig00000207_pilon:21522..23789- (Gracilaria gracilis GNS1m male)
ATGACCAGAAGACGTAGGAAGAACAAAAATGTACAAAAGGCTCCTGCATG
GGAGGTTTCGAGAACGTTTGCGAACCCGGAACGTCAATCTCTTCCACTAC
CTGTTGTTCAGCCTGACGGAATCGTGAAAAAGGCGCAACTATCTCGCCCA
AAATTCATTGCCAAGGCAAAGACTAAAAAGGAAAAGAAGGTACTCATTGA
ACAGGTTTTGAACGATTTCAGAGAAGATGGAAATCCAGACGCAAACGAGA
ATAGTGATCGAGGCGAAAAGAGATCGCGAAAGCGTCCTCGTCACGCCCTC
GAGAAGTACGCGGAACAGATAGAGAAGATAGAGACGATCAAAGTCAACAT
TGCTTCCATGGCATCCAGAATCACTTCTAACCCAGAGGAGAGTGTTTCGT
TGTTGCGGGAACTTCGTTCAATGGGGCGCGATTCCAAGGGCAAAGTCGCT
GCGCTAATTCTGCTCACAGAATCCCAGGTTTACAAGGACATAGCCCCAGG
CTATAGAATACGTCGGATAACAGAGAAAGAAGCGGAAACTAAAGTATCAA
AAGAGACGAAGCGTTTGCGAGACTTTGAAGAGGCTCTTCTTTCAAGCTAC
CAACGTTTCGTAAAATCATGCATCAGTCTTTCAAACTGGAGGTTTTCGGG
CACTAGGCATACACATGCAAGTCAAAATATGACCAAGGTTCGTTTCGCCG
CATGTAAGGCCTTGTCAGAGCTCCTTCGCTCATTGCCACATTTCAACGAA
GCAGAAGTTATCGCTAATATGGTTTGTACTCATGTATGCAATCAAGAGGC
TGAGATTCGGAAACTGTGTTCACGAGCACTTTCGGCAGTACTACGGAACG
CTCACCGAGCATCAGGAAACACTCTCGAGCTATGTGTTTCGATTGCAAAG
AATCTCGCTAAAGTTGCTGGGAAAAAGAAGCGATCAGCACCGGCAGAACT
CGTTGCCCCACTCACCGAAATCCAGTTTGCAAACTTTGCCCGTCTTCCAA
CGTCCAGCAAGTCAAAGAAAGAACAGGCAAAGGGTTCTAAGCGACTGAGC
AAAGTGAAGCGAAAGCGCTTGATGAAACAGGAGAAACATGCAGTTGATGA
GAAGGAAGTCGAGAAGGACATGCGCGAGGGGGATGCGGAAGCGACTTCAC
AGGAGCTTTTCGGTGCAAAAAAAAGCTTGTTAAATTCTGTGTGTCATGCC
TACTTCAATATAATCCGTGCGGCTTCGATTGACGTGGACACTATAGAAGA
AGTGAAACAAAATAAGCCGAAGCCCAAGAAGCGGAAACCTCCGACAGCGC
TTTCACCGGCATTGAAAGGTCTGCTAAGAATATCTATGTTCATCAGCACA
GATATCATTGATGCGATTCTAGGAGCCTTAACGCCACTGCTCGAAACTGG
ACAGTTACCGCTCAGCAATCGATTCCGTTGCCTTTCTGCTGCATACGCTG
TTTTGGGAGTGCATGCACGATCTCAGAAAGTCAGTGCCGATTCTTTTACT
GGAGACACCAGAGCACTTGATACCGCGCTCTATACAGCCATAGGAGCGTT
ATACACGTCAGAAATGCCCCTACGGGAAGACGAATCAATAACATTTGACG
CGATTGAAGCGGTCGTAGCGTCAACAAGTTTTCGTGATATGCCTGTTGCA
AGATGTGCGGCGCTTGCAAGAAGACTGGCCATTGCCGCAACAAACGCACC
CGTTCATTCCTGCACCATTGCGCTCCTCTATGCGGCTCAGATACTGATGC
CCTCTTCCATTGTTTCCCCCATCTTCGCTCAACTCGATGAGAATAATGAA
ATGAGAGTGATAGATGATGTTGGACTGGTTCAGAACTTCAATATGGAAAC
TGATGATCCTGACATTTCTGCAGCGGAAAGAAGCGCTTCGTGGGAACTAT
GCCCCCTTGCTAATTCGTTCCATCCGACTGTTCGAGAAATCGCCAAACAA
TGCGCTGCCGGAAGTTGTGGGTCCAGACTTGCGAAGAGTACAGCAAGTAT
TGTTGTCAAAGCGAAGGCGTTCTCAAACGCCCAAGGGGGCTTTAATCCGC
CGCCACAGCCTGCGCTGCGCGGGAATCGAAAACGCCATCGTACGGAAACA
GAGCAGCTTGTGGAACATCAACGGTTGCTATCGGAACAAGAGGGACGACT
GATAGAGAAGGAGCTTGGAAATGATGAGACGAACATGGAGGACTTCCTCT
TGGCCCAATGGCACAGCAGAGAGGTGAATAAAAGAGACGAAGGTCAACAC
ACTTGGGGCAAACAATAA