Ggra11067.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra11067.t1
Unique NameGgra11067.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length562
Homology
BLAST of Ggra11067.t1 vs. uniprot
Match: A0A2V3J5W6 (Cell surface glycoprotein 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5W6_9FLOR)

HSP 1 Score: 355 bits (912), Expect = 3.800e-113
Identity = 333/559 (59.57%), Postives = 385/559 (68.87%), Query Frame = 0
Query:    5 LLVLFTLWGSLTVSFAVPTVIRQD-ANTDTCPIDGVCFALDQSGSIFTNYPILQAFVAAVAREVESNSPQTLFSAFGFATSFNTIQTSTSEVEGAFVPAVNAPVTPAGTTNMFAGLNACFNELTDLTGNRVIVLITDGVDNGTPFAIQLAPTVKEQGIVIITVGIGAGVSSLYLQQVATSPDFFIASAFTALPVEVFSLTQMMCELPAVSPVP--TDDDFSEPEISATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLFASXXXXXXXXXXXXXXVDVPETPTPEIPXXXXXXXXXXXXXXXXPPITPPVVDACEMAFQECGFTFVGTATVPTFALPSTPDVPFTPRIISRNPNINIGVVNTNDIVPGFIEPDGSVVAITDETDATQPFAPTQFKPFSIPGDNGSAIGHQTFQANQAFVIADRCVRVFFSSFQLLSTEEPFSVIGNVDATIDDNACVVFRT 560
            LL+       L++S AVPTV+RQD ++ +TCPID VCFA+DQSGSIF NY  +Q FV  VARE+ES S  TLFSA+GF+ S  TIQTSTS++E  FVPAV A   P+G+TNM+AGLN CFN++ D  GN+VI+L+TDG DN  P A  LAP +K+ GI I+TVGIGAGVS+ YL+Q+A++PDFFI   F+ LP EV SL+QM C+    SP P  T ++  EP ++ T XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  XXXXXXXXXXXXXX           XXXXXXXXXXXXXXXXXXXXXXXXX      XXXXXXXXXXX     XXXXXXXXXXXXXXXXXXX     XXXXXXXXXX                                    PP +DACE A+Q+C F F  T  VPTF L   PD PFTPRI+SR P + +GV+NTN I+P FIE DGSV  IT  T A   FAPTQFKP SIP D GS +G+QTFQ NQ     +RCVR+FF+SFQLL    PFSVI N++A   DN CVVFRT
Sbjct:    3 LLIFLAFSAFLSLSIAVPTVVRQDDSSEETCPIDSVCFAMDQSGSIFLNYGAIQNFVIEVAREIESRSFGTLFSAYGFSNSVTTIQTSTSQLETLFVPAVTASGPPSGSTNMYAGLNGCFNDIADQPGNKVIILLTDGQDNAFPLASSLAPVIKDAGITIVTVGIGAGVSAPYLEQLASTPDFFIQLMFSTLPSEVVSLSQMTCDAVDASPEPSETPEETMEPFVTETPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIFXXXXXXXXXXXXXXLVSESPEPSMTXXXXXXXXXXXXXXXXXXXXXXXXXVIESPIXXXXXXXXXXXVPSEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------------------------PPTLDACEQAYQDCDFAFFDTPVVPTFTLGGNPDKPFTPRIVSRIPGVVVGVLNTNGIIPEFIESDGSVDLITS-TPAIPMFAPTQFKPLSIPDDIGSGVGYQTFQGNQLVEARNRCVRLFFTSFQLLEPTPPFSVIANINADRTDNKCVVFRT 524          
BLAST of Ggra11067.t1 vs. uniprot
Match: A0A2V3IFK7 (Collagen alpha-6(VI) chain n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFK7_9FLOR)

HSP 1 Score: 196 bits (498), Expect = 9.350e-54
Identity = 103/202 (50.99%), Postives = 139/202 (68.81%), Query Frame = 0
Query:   20 AVPTVIRQDANT----DTCPIDGVCFALDQSGSIFTN-YPILQAFVAAVAREVESNSPQTLFSAFGFATSFNTIQTSTSEVEGAFVPAVNAPVTPAGTTNMFAGLNACFNELTDLTGNRVIVLITDGVDNGTPFAIQLAPTVKEQGIVIITVGIGAGVSSLYLQQVATSPDFFIASAFTALPVEVFSLTQMMCELPAVSPVP 216
            ++P  I QD  T    + C I+ VCF LD+SGSI ++ Y + Q FV +V+R + S +  TL+SA+GFA+S + IQ STS +EG FVP +N      G+TNM+AGLNACFNE+    GNRVIVLITDG DNG P A  LAPTVK  G+ I+T+G+G+GV   YL+ +AT+P FFI S F++LP +V  + +  C++  VSPVP
Sbjct:   19 SIPFSIHQDLPTNDTSEDCSINSVCFVLDESGSIQSSEYIVEQQFVISVSRVISSRTNGTLYSAYGFASSASVIQASTSNLEGTFVPVINQSQQSGGSTNMYAGLNACFNEVNGNAGNRVIVLITDGGDNGNPLAEALAPTVKAAGVAIVTIGVGSGVDEDYLRSLATTPAFFIPSTFSSLPADVVRVAESSCDVVEVSPVP 220          
BLAST of Ggra11067.t1 vs. uniprot
Match: A0A2V3IP66 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IP66_9FLOR)

HSP 1 Score: 155 bits (391), Expect = 6.200e-37
Identity = 81/157 (51.59%), Postives = 102/157 (64.97%), Query Frame = 0
Query:  404 PITPPVVDACEMAFQECGFTFVGTATVPTFALPSTPDVPFTPRIISRNPNINIGVVNTNDIVPGFIEPDGSVVAITDETDATQPFAPTQFKPFSIPGDNGSAIGHQTFQANQAFVIADRCVRVFFSSFQLLSTEEPFSVIGNVDATIDDNACVVFRT 560
            P   PVVD C+ A+  CGF F     VP F++    +V F+P I SRN N N+GV+N+N++     E DG+ V IT    A+Q F+ TQFKPFS+    GS IGH+TFQA+Q  VI  RCVRVFFS FQLL    PF+V+GNV A  +DN CVVF+T
Sbjct:  446 PTPEPVVDKCQQAYDLCGFYFGNETDVPVFSVDGPDNVAFSPVIESRNDNENLGVLNSNNLEVEIFEGDGNYVGITS-LPASQTFSRTQFKPFSLSNTKGSGIGHETFQADQREVIRGRCVRVFFSHFQLLELTPPFNVVGNVVAGREDNKCVVFKT 601          
BLAST of Ggra11067.t1 vs. uniprot
Match: A0A2V3IGK2 (Collagen alpha-1(XXVIII) chain n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGK2_9FLOR)

HSP 1 Score: 130 bits (327), Expect = 7.680e-30
Identity = 68/148 (45.95%), Postives = 93/148 (62.84%), Query Frame = 0
Query:  413 CEMAFQECGFTFVGTATVPTFALPSTPDVPFTPRIISRNPNINIGVVNTNDIVPGFIEPDGSVVAITDETDATQPFAPTQFKPFSIPGDNGSAIGHQTFQANQAFVIADRCVRVFFSSFQLLSTEEPFSVIGNVDATIDDNACVVFRT 560
            C  AF EC FTF G   + TF++   PD  FTPRI+S++ ++ +GV+N+N+IVP FIE +G V  IT+    +Q F PT FKP+++    GS IGHQTF  NQ  V  DRC+RV+F+ FQ +   +   +I   D    +N CVVFRT
Sbjct:  211 CSKAFDECEFTFRGKTGLSTFSIAGRPDRSFTPRIVSKDASVRLGVLNSNNIVPEFIEDNG-VFPITNF--GSQRFTPTHFKPYTLMNGQGSGIGHQTFHGNQKQVAKDRCIRVYFTHFQEIRNNK---LINRNDVPRSENKCVVFRT 352          
BLAST of Ggra11067.t1 vs. uniprot
Match: A0A2V3IQI6 (VWFA domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQI6_9FLOR)

HSP 1 Score: 108 bits (271), Expect = 2.940e-22
Identity = 62/155 (40.00%), Postives = 87/155 (56.13%), Query Frame = 0
Query:  408 PVVDACEMAFQECGFTFVGTATVPT--FALPSTPDVPFTPRIISRNPNINIGVVNTNDIVPGFIEPDGSVVAITDETDATQPFAPTQFKPFSIPGDNGSAIGHQTFQANQAFVIADRCVRVFFSSFQLLSTEEPFSVIGNVDATIDDNACVVFRT 560
            P    CE A+ +C F F G        F++   PD  FTPR++ +    ++G +NTN++VP FIE +     IT+    +Q F PT FKP+ I  + GS +GHQTFQ NQ  V  D+CVRV+F+SFQ +       V+   +    +N CVVFRT
Sbjct:  209 PEKTECEKAYDKCLFKFSGVNGFNNAIFSIAGEPDKSFTPRVVPKATTYSLGTLNTNNVVPEFIEGNQGR-PITEF--GSQRFTPTHFKPYWISEERGSGVGHQTFQGNQLEVANDKCVRVYFTSFQEVPPNGQ--VVNRNNVPTSENKCVVFRT 358          
BLAST of Ggra11067.t1 vs. uniprot
Match: A0A2V3IGH1 (VWFA domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGH1_9FLOR)

HSP 1 Score: 107 bits (266), Expect = 1.360e-21
Identity = 58/150 (38.67%), Postives = 88/150 (58.67%), Query Frame = 0
Query:  413 CEMAFQECGFTFVGTATVPT--FALPSTPDVPFTPRIISRNPNINIGVVNTNDIVPGFIEPDGSVVAITDETDATQPFAPTQFKPFSIPGDNGSAIGHQTFQANQAFVIADRCVRVFFSSFQLLSTEEPFSVIGNVDATIDDNACVVFRT 560
            CE A+ +C F F G        F++   PD   TP+++ +    ++G +NTN++VP FIE +  V  IT+    +Q F PT FKP+ I  + GS +GHQTFQ NQ  +  D+CVR++F+SFQ +S  +   V+   +    ++ CVVFRT
Sbjct:  215 CEKAYNKCLFKFSGIDDFNNAIFSIAGEPDKSMTPQVVPKATTYSLGTLNTNNVVPEFIE-ENQVSLITEF--GSQRFTPTHFKPYWISEERGSGVGHQTFQGNQLELANDKCVRLYFTSFQEIS--QNGQVVNRNNVPTSEHKCVVFRT 359          
BLAST of Ggra11067.t1 vs. uniprot
Match: A0A2V3IEB5 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEB5_9FLOR)

HSP 1 Score: 98.6 bits (244), Expect = 2.490e-20
Identity = 66/160 (41.25%), Postives = 88/160 (55.00%), Query Frame = 0
Query:  407 PPVVDACEMAFQECGFTFVGTATVPTFALPSTPD-VPFTPRIISRNPNINIGVVNTNDIVPGFIEPDGSVVAITDETDATQPFAPTQFKPFSIPGDNGSAIGHQTFQANQAFVIADRCVRVFFSSFQLLSTEEPFSVIGNVDAT----IDDNACVVFRTA 561
            PP  D C   F +C   F G A + TF L +T D V FTP I+   P   IG+VN+N ++P FIE   S +  T+ T       PTQFKPF+I     S +GH+TFQ   + V   RCVRV+F+S Q+L   +   V+ N   T    + +N CVVFRT+
Sbjct:   23 PP--DFCVSFFDDCVLRFAGQAALATFPLAATVDNVAFTPAIVF--PGEQIGIVNSNGVIPQFIESKPSGITATNVT--AFGLTPTQFKPFTIVNTTTSGVGHETFQGAVS-VAQRRCVRVYFTSGQIL---QGGVVVDNAQFTPEEAVAENVCVVFRTS 172          
BLAST of Ggra11067.t1 vs. uniprot
Match: Q7XZ43 (Alpha 1 type VII collagen (Fragment) n=1 Tax=Griffithsia japonica TaxID=83288 RepID=Q7XZ43_GRIJA)

HSP 1 Score: 72.0 bits (175), Expect = 7.280e-11
Identity = 51/162 (31.48%), Postives = 81/162 (50.00%), Query Frame = 0
Query:   34 CPIDGVCFALDQSGSIF-TNYPILQAFVAAVAREVESNSPQTLFSAFGFATSFN------TIQTSTSEVEGAFVPAVNAPVTPAGTTNMFAGLNACFNELTDLTGNRVIVLITDGVDNGTPFAIQLAPTVKEQGIVIITVGIGAGVSSLYLQQ-VATSPDFF 187
            CP   +C+A+D+S SI  T +  L A +  +     + +P + F+A  F+   N       +   TS+V   F+ A+ A     G T+   GLN C  EL      +VI+LITDGVDN  P  + +   +K  G  +  VGIG  ++   L+  +++SPD +
Sbjct:   25 CPPAKICYAIDESESISGTEFAQLNAALVEITNTFSTAAPGSSFAAVDFSGLQNGGGVGEVVSPLTSDVT-TFLAALAANPKRGGFTSSGTGLNLCDQELDGQAQPKVILLITDGVDNRNPIGVDVEAAIKANGNTVAVVGIGDNLNDDDLRDTISSSPDLY 185          
BLAST of Ggra11067.t1 vs. uniprot
Match: A0A7S1XH88 (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XH88_9RHOD)

HSP 1 Score: 74.3 bits (181), Expect = 1.020e-10
Identity = 58/185 (31.35%), Postives = 91/185 (49.19%), Query Frame = 0
Query:   34 CPIDGVCFALDQSGSIF-TNYPILQAFVAAVAREVESNSPQ----TLFSAFGFATSFNTIQTSTSEVEGAFVPAVNAPVTPAGTTNMFAGLNACFNELTDLTGNRVIVLITDGVDNGTPFAIQLAPTVKE-QGIVIITVGIG-AGVSSLYLQQVATSPDFFIASA-FTALPVEVFSLTQMMCELP 210
            CPI+ +CFA+D+SGSI  T +      V  VA  +ES S      T + A GF++S N +   T+     F   V++     G T+    L  C N +    G RVIVL+TDG  +    A   A  +K      ++T+G+G    ++  L+ +A+ P+FF+ S  F+ L  +   + Q +C  P
Sbjct:   23 CPINSICFAIDESGSISGTQFIAENTAVKNVADSIESISISLGISTTYGAVGFSSSANVVSPLTNLAT--FKGNVDSNPKSGGGTSYGPALQQCRNLIGPQAGVRVIVLVTDGQPSDPAAATSEANIIKSLPNTFLVTIGVGLTSTATTLLRDLASGPEFFVGSTDFSTLTTQTGKILQAICPPP 205          
The following BLAST results are available for this feature:
BLAST of Ggra11067.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A2V3J5W63.800e-11359.57Cell surface glycoprotein 1 n=1 Tax=Gracilariopsis... [more]
A0A2V3IFK79.350e-5450.99Collagen alpha-6(VI) chain n=1 Tax=Gracilariopsis ... [more]
A0A2V3IP666.200e-3751.59Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IGK27.680e-3045.95Collagen alpha-1(XXVIII) chain n=1 Tax=Gracilariop... [more]
A0A2V3IQI62.940e-2240.00VWFA domain-containing protein n=1 Tax=Gracilariop... [more]
A0A2V3IGH11.360e-2138.67VWFA domain-containing protein n=1 Tax=Gracilariop... [more]
A0A2V3IEB52.490e-2041.25Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
Q7XZ437.280e-1131.48Alpha 1 type VII collagen (Fragment) n=1 Tax=Griff... [more]
A0A7S1XH881.020e-1031.35Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002035von Willebrand factor, type ASMARTSM00327VWA_4coord: 35..207
e-value: 1.2E-13
score: 61.4
IPR002035von Willebrand factor, type APFAMPF00092VWAcoord: 39..196
e-value: 1.3E-14
score: 54.8
IPR002035von Willebrand factor, type APROSITEPS50234VWFAcoord: 38..209
score: 13.669302
IPR036465von Willebrand factor A-like domain superfamilyGENE3D3.40.50.410von Willebrand factor, type A domaincoord: 35..209
e-value: 2.5E-22
score: 81.6
IPR036465von Willebrand factor A-like domain superfamilySUPERFAMILY53300vWA-likecoord: 39..207
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 251..364
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 251..354
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..561
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availableCDDcd00198vWFAcoord: 39..185
e-value: 1.18996E-16
score: 75.6802

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000207_piloncontigtig00000207_pilon:35254..36939 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11067.t1Ggra11067.t1Gracilaria gracilis GNS1m malemRNAtig00000207_pilon 35254..36939 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra11067.t1 ID=Ggra11067.t1|Name=Ggra11067.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=562bp
MRSFLLVLFTLWGSLTVSFAVPTVIRQDANTDTCPIDGVCFALDQSGSIF
TNYPILQAFVAAVAREVESNSPQTLFSAFGFATSFNTIQTSTSEVEGAFV
PAVNAPVTPAGTTNMFAGLNACFNELTDLTGNRVIVLITDGVDNGTPFAI
QLAPTVKEQGIVIITVGIGAGVSSLYLQQVATSPDFFIASAFTALPVEVF
SLTQMMCELPAVSPVPTDDDFSEPEISATPEVTETPEVLGTLGVTETPEV
TETPEVTETPEVSETPEVTETPEVTETPEVTETPEVTETPEVTETPEVTE
SPEVTESPELSETPEVTETPEITETPEVSITPEVSITPEVSITPEVSETP
EVSESPLFASPELTETPEPSETPVVDVPETPTPEIPTPTVSVTPTVSETP
DVPPITPPVVDACEMAFQECGFTFVGTATVPTFALPSTPDVPFTPRIISR
NPNINIGVVNTNDIVPGFIEPDGSVVAITDETDATQPFAPTQFKPFSIPG
DNGSAIGHQTFQANQAFVIADRCVRVFFSSFQLLSTEEPFSVIGNVDATI
DDNACVVFRTA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
IPR036465vWFA_dom_sf