Ggra11093.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra11093.t1
Unique NameGgra11093.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length300
Homology
BLAST of Ggra11093.t1 vs. uniprot
Match: R7QK10 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QK10_CHOCR)

HSP 1 Score: 265 bits (677), Expect = 6.190e-85
Identity = 152/279 (54.48%), Postives = 196/279 (70.25%), Query Frame = 0
Query:   25 LGNVVAECINARRYIGDANRAEGERKKMRAYIEAMKRKSMRVLHRAELYARSGHAAWPGIDPTITDPVSLAEEYVRVVENYEAVLSEEEGRAKLVRAENIADTDSG----AIKDLEITREEWEKADDLAYREALHDEKNDKQRSESARRGLFDDTDGLRRRKGAAGSSEVKKGTLSKEDEELMARHQPIQDELTSNLVDLVGQLKESVTNNNEKLKKDSKVLDKTEDAVEKNISGITRHRTNLREYGQTTTVSWXXXXXXXXXXXXXXXXXXXLMRIPI 299
            +GN++AE I ARRY+GD   AEGERK MR YIEAMKRKSMRVLHRAELYA+SGHA+WPGIDPTITDPVSLAEEYV VVENYEAVL EEE RAKLV+ + +   D      A++ L +  E+WE ADD++YRE L  E+   + ++ AR+ L  ++ G+RRRKG  G + V  G++  +DEE MARHQPI+ ELTSNLV LVGQLK+S+  N  KL+KDS VLD+TE+ V KN++G ++ R  L+ Y  + ++SW                   +++IPI
Sbjct:    1 MGNLIAEGIQARRYVGDIASAEGERKLMREYIEAMKRKSMRVLHRAELYAKSGHASWPGIDPTITDPVSLAEEYVHVVENYEAVLMEEESRAKLVKEKVVGPGDDSREGEAVRKLAMEEEDWEAADDVSYRETLKREQVLTRDADDARKELLGESQGMRRRKGG-GRTVV--GSIVLQDEEFMARHQPIEVELTSNLVGLVGQLKQSILANKGKLEKDSIVLDETEEVVYKNLAGTSKQREELKTYSNSFSISWWAMLVVALVMLFIFVLLVIVLKIPI 276          
BLAST of Ggra11093.t1 vs. uniprot
Match: A0A2V3J341 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J341_9FLOR)

HSP 1 Score: 203 bits (517), Expect = 1.470e-61
Identity = 111/154 (72.08%), Postives = 124/154 (80.52%), Query Frame = 0
Query:    2 ASGKITGRAEKDEVFWTELEIRRLGNVVAECINARRYIGDANRAEGERKKMRAYIEAMKRKSMRVLHRAELYARSGHAAWPGIDPTITDPVSLAEEYVRVVENYEAVLSEEEGRAKLVRAENIADTDSGAIKDLEI-TREEWEKADDLAYREAL 154
            A+ KI+ R EKDEVFWTELEIRRLGNVVAECIN++RY+GD   A+ ERK MR YIEAMKRKS RVLHRAELYA+SGHA WPGIDPTI+DPVSLAEEYVRVVENYEAVLSEEE RAK   A+ +   D G +   E   R+ WE  DDLAY+EAL
Sbjct:   20 AAKKISKR-EKDEVFWTELEIRRLGNVVAECINSKRYLGDEKAAKEERKLMRTYIEAMKRKSTRVLHRAELYAQSGHAQWPGIDPTISDPVSLAEEYVRVVENYEAVLSEEESRAKTTLAKTVHSDDFGDVARYENGKRDGWELEDDLAYQEAL 172          
BLAST of Ggra11093.t1 vs. uniprot
Match: A0A1X6NZG3 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NZG3_PORUM)

HSP 1 Score: 99.8 bits (247), Expect = 1.760e-20
Identity = 102/313 (32.59%), Postives = 149/313 (47.60%), Query Frame = 0
Query:   13 DEVFWTELEIRRLGNVVAECINARRYIGDANRAEGERK-------------KMRAYIEAMKRKSMRVLHRAELYARS--GHAAWPGIDPTITDPVSLAEEYVRVVENYEAVLSEEEGR--AKLVRAENIADTDSGAIKDLEI--TREEWEKADD--LAYREALHDEKNDKQR--------------------SESARRGLFDDTDGLRRRKGAAGSS------EVKKGTLSKEDEE----LMARHQPIQDELTSNLVDLVGQLKESVTNNNEKLKKDSKVLDKTEDAVEKNISGITRHRTNLREYGQTTTVSW 274
            D+V WTELE  RL   +   ++A    G   RAE ++K              +R  I+A++RK++R+LHRA+L +RS  G  +WPG+DP   DP +LA+ YV  VE+ +  ++E E R  A L    + ADT   A    E   TR     A D  +   +A+ D                             +AR  L  D  GLRRR G AG               S  DE     L+   +P+QD LT  +++LVG+LK +V   +E L  D+ VLD T+ AV+ N++G+ R R +L  Y +  ++SW
Sbjct:    5 DDVLWTELEFLRLHASIRRTLSATDDTG-GGRAEVKKKGAPSPLVHAADALDLRTRIDALQRKALRMLHRAQLESRSAGGGDSWPGVDPNTPDPEALADRYVAAVEDIKTRMAEREERRAAGLGGESDAADTGDEAEMGAEGGGTRGRGGGAADGSVDSGDAVVDGGXXXXXXXXXXXXXXXXPAGGLTPATDTNARSALLGD--GLRRRGGRAGMGGEXXXXXXXXXXXSAGDENADAALVDAQRPVQDALTGEMLELVGRLKRNVQGISEDLVTDAAVLDATDAAVDANLAGVVRQRGSLATYAERASLSW 314          
The following BLAST results are available for this feature:
BLAST of Ggra11093.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
R7QK106.190e-8554.48Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A2V3J3411.470e-6172.08Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A1X6NZG31.760e-2032.59Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 102..122
NoneNo IPR availableCOILSCoilCoilcoord: 42..62
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 156..204
NoneNo IPR availablePANTHERPTHR13050:SF7VESICLE TRANSPORT PROTEIN USE1coord: 96..298
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 295..299
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 272..294
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..271
NoneNo IPR availableCDDcd15860SNARE_USE1coord: 206..265
e-value: 1.61765E-11
score: 56.804
NoneNo IPR availableTMHMMTMhelixcoord: 272..294
IPR019150Vesicle transport protein, Use1PFAMPF09753Use1coord: 96..297
e-value: 6.4E-22
score: 78.4
IPR019150Vesicle transport protein, Use1PANTHERPTHR13050USE1-LIKE PROTEINcoord: 96..298

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000207_piloncontigtig00000207_pilon:96724..97623 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11093.t1Ggra11093.t1Gracilaria gracilis GNS1m malemRNAtig00000207_pilon 96724..97623 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra11093.t1 ID=Ggra11093.t1|Name=Ggra11093.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=300bp
MASGKITGRAEKDEVFWTELEIRRLGNVVAECINARRYIGDANRAEGERK
KMRAYIEAMKRKSMRVLHRAELYARSGHAAWPGIDPTITDPVSLAEEYVR
VVENYEAVLSEEEGRAKLVRAENIADTDSGAIKDLEITREEWEKADDLAY
REALHDEKNDKQRSESARRGLFDDTDGLRRRKGAAGSSEVKKGTLSKEDE
ELMARHQPIQDELTSNLVDLVGQLKESVTNNNEKLKKDSKVLDKTEDAVE
KNISGITRHRTNLREYGQTTTVSWWLMMIAVIVMVVIFVLLLILMRIPI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019150Vesicle_transport_protein_Use1