Ggra11054.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11054.t1
Unique NameGgra11054.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length210
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000207_piloncontigtig00000207_pilon:2..845 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11054Ggra11054Gracilaria gracilis GNS1m malegenetig00000207_pilon 2..845 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11054.t1Ggra11054.t1Gracilaria gracilis GNS1m malepolypeptidetig00000207_pilon 2..845 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11054.t1.CDS1Ggra11054.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000207_pilon 2..15 -
Ggra11054.t1.CDS2Ggra11054.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000207_pilon 99..206 -
Ggra11054.t1.CDS3Ggra11054.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000207_pilon 340..845 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11054.t1.exon1Ggra11054.t1.exon1Gracilaria gracilis GNS1m maleexontig00000207_pilon 2..15 -
Ggra11054.t1.exon2Ggra11054.t1.exon2Gracilaria gracilis GNS1m maleexontig00000207_pilon 99..206 -
Ggra11054.t1.exon3Ggra11054.t1.exon3Gracilaria gracilis GNS1m maleexontig00000207_pilon 340..845 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11054.t1.intron1Ggra11054.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000207_pilon 16..98 -
Ggra11054.t1.intron2Ggra11054.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000207_pilon 207..339 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11054.t1.start1Ggra11054.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000207_pilon 843..845 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11054.t1 ID=Ggra11054.t1|Name=Ggra11054.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=210bp
MSKFYPAILPASERMPSPLIKSKPSPDTTVMINLRSFEEESKTQAEREYD
DTYGPLLDLPDAASDPKQRAIQKKRRKVRSAIVSRRKSALYEKKLEAELH
LRTKVNDQLKDKLKNYSVTLAGIQQKINILPNNVHPMCTPASTTITTATN
AAITTSTAATSLPPPVYVTSLSPPINPHNSPPPPRSGIPFYAKCICPIFF
FFALSPLSNX
back to top

spliced messenger RNA

>Ggra11054.t1 ID=Ggra11054.t1|Name=Ggra11054.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=628bp|location=Sequence derived from alignment at tig00000207_pilon:2..845- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCAAGTTCTACCCCGCCATCCTGCCCGCGTCCGAGCGCATGCCTTC
CCCGCTCATAAAGTCCAAGCCCTCGCCCGACACCACCGTTATGATTAACC
TTCGCTCCTTCGAGGAAGAGTCCAAGACCCAGGCCGAGCGCGAGTATGAT
GACACCTATGGACCGCTGCTCGACCTGCCCGACGCCGCCTCAGATCCCAA
GCAGCGCGCTATCCAGAAGAAGCGCCGCAAGGTTCGTTCTGCTATCGTCT
CCAGACGCAAGAGCGCTCTGTACGAGAAGAAGTTGGAGGCTGAGTTACAT
CTTCGAACAAAAGTTAATGATCAGCTAAAGGATAAACTCAAGAACTATTC
CGTCACCCTTGCAGGCATTCAACAGAAGATTAACATTCTGCCGAATAACG
TGCATCCCATGTGCACTCCTGCCTCAACCACTATAACCACCGCCACCAAC
GCTGCAATCACCACATCCACTGCTGCCACCTCCTTGCCCCCACCCGTCTA
CGTCACGTCACTTTCTCCACCAATCAATCCCCATAATTCTCCTCCACCCC
CTCGCTCTGGCATACCTTTCTATGCAAAATGCATCTGCCCTATTTTTTTT
TTTTTTGCTCTCTCCCCGCTATCAAACG
back to top

protein sequence of Ggra11054.t1

>Ggra11054.t1 ID=Ggra11054.t1|Name=Ggra11054.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=210bp
MSKFYPAILPASERMPSPLIKSKPSPDTTVMINLRSFEEESKTQAEREYD
DTYGPLLDLPDAASDPKQRAIQKKRRKVRSAIVSRRKSALYEKKLEAELH
LRTKVNDQLKDKLKNYSVTLAGIQQKINILPNNVHPMCTPASTTITTATN
AAITTSTAATSLPPPVYVTSLSPPINPHNSPPPPRSGIPFYAKCICPIFF
FFALSPLSNX
back to top

mRNA from alignment at tig00000207_pilon:2..845-

Legend: polypeptideCDSexonstart_codonintron
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11054.t1 ID=Ggra11054.t1|Name=Ggra11054.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=844bp|location=Sequence derived from alignment at tig00000207_pilon:2..845- (Gracilaria gracilis GNS1m male)
ATGTCCAAGTTCTACCCCGCCATCCTGCCCGCGTCCGAGCGCATGCCTTC
CCCGCTCATAAAGTCCAAGCCCTCGCCCGACACCACCGTTATGATTAACC
TTCGCTCCTTCGAGGAAGAGTCCAAGACCCAGGCCGAGCGCGAGTATGAT
GACACCTATGGACCGCTGCTCGACCTGCCCGACGCCGCCTCAGATCCCAA
GCAGCGCGCTATCCAGAAGAAGCGCCGCAAGGTTCGTTCTGCTATCGTCT
CCAGACGCAAGAGCGCTCTGTACGAGAAGAAGTTGGAGGCTGAGTTACAT
CTTCGAACAAAAGTTAATGATCAGCTAAAGGATAAACTCAAGAACTATTC
CGTCACCCTTGCAGGCATTCAACAGAAGATTAACATTCTGCCGAATAACG
TGCATCCCATGTGCACTCCTGCCTCAACCACTATAACCACCGCCACCAAC
GCTGCAATCACCACATCCACTGCTGCCACCTCCTTGCCCCCACCCGTCTA
CGTCACGTCACACCAAACATATCATCATCCAGAAAAGCCTTTGCCCTCTA
TCAGCTCGCTTCAACTCCCACCGCAATCCCTCCCACCAGCAAAGTACATC
GCTCTCCCTCGCTTCCATGAGCCGCGAGAAACCTCTCAGGTCACTTTCTC
CACCAATCAATCCCCATAATTCTCCTCCACCCCCTCGCTCTGGCATACCT
TTCTATGCAAAATGCATCTGCCCTATTTTTTTTTTTTTTGCTCTCTCGTA
CGCCTCTACTCCTCACACACAGGCCTGCTCACACACCTTACTCACCGTAT
TCATTTGCTCTCATGTACTGGTAACGACAGCCCGCTATCAAACG
back to top

Coding sequence (CDS) from alignment at tig00000207_pilon:2..845-

>Ggra11054.t1 ID=Ggra11054.t1|Name=Ggra11054.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=628bp|location=Sequence derived from alignment at tig00000207_pilon:2..845- (Gracilaria gracilis GNS1m male)
ATGTCCAAGTTCTACCCCGCCATCCTGCCCGCGTCCGAGCGCATGCCTTC
CCCGCTCATAAAGTCCAAGCCCTCGCCCGACACCACCGTTATGATTAACC
TTCGCTCCTTCGAGGAAGAGTCCAAGACCCAGGCCGAGCGCGAGTATGAT
GACACCTATGGACCGCTGCTCGACCTGCCCGACGCCGCCTCAGATCCCAA
GCAGCGCGCTATCCAGAAGAAGCGCCGCAAGGTTCGTTCTGCTATCGTCT
CCAGACGCAAGAGCGCTCTGTACGAGAAGAAGTTGGAGGCTGAGTTACAT
CTTCGAACAAAAGTTAATGATCAGCTAAAGGATAAACTCAAGAACTATTC
CGTCACCCTTGCAGGCATTCAACAGAAGATTAACATTCTGCCGAATAACG
TGCATCCCATGTGCACTCCTGCCTCAACCACTATAACCACCGCCACCAAC
GCTGCAATCACCACATCCACTGCTGCCACCTCCTTGCCCCCACCCGTCTA
CGTCACGTCACTTTCTCCACCAATCAATCCCCATAATTCTCCTCCACCCC
CTCGCTCTGGCATACCTTTCTATGCAAAATGCATCTGCCCTATTTTTTTT
TTTTTTGCTCTCTCCCCGCTATCAAACG
back to top