Ggra11099.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11099.t1
Unique NameGgra11099.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length148
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000207_piloncontigtig00000207_pilon:128502..129413 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3055.EDP07350
PFAMsRibosomal_L27A
Max annot lvl3041|Chlorophyta
KEGG koko:K02900
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Evalue2.88e-56
EggNOG OGsCOG0200@1|root,KOG1742@2759|Eukaryota,37TS4@33090|Viridiplantae,34HRU@3041|Chlorophyta
DescriptionBelongs to the universal ribosomal protein uL15 family
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11099Ggra11099Gracilaria gracilis GNS1m malegenetig00000207_pilon 128502..129413 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11099.t1Ggra11099.t1Gracilaria gracilis GNS1m malepolypeptidetig00000207_pilon 128502..129413 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11099.t1.CDS1Ggra11099.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000207_pilon 128502..128504 +
Ggra11099.t1.CDS2Ggra11099.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000207_pilon 128665..128727 +
Ggra11099.t1.CDS3Ggra11099.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000207_pilon 128938..128956 +
Ggra11099.t1.CDS4Ggra11099.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000207_pilon 129055..129413 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11099.t1.exon1Ggra11099.t1.exon1Gracilaria gracilis GNS1m maleexontig00000207_pilon 128502..128504 +
Ggra11099.t1.exon2Ggra11099.t1.exon2Gracilaria gracilis GNS1m maleexontig00000207_pilon 128665..128727 +
Ggra11099.t1.exon3Ggra11099.t1.exon3Gracilaria gracilis GNS1m maleexontig00000207_pilon 128938..128956 +
Ggra11099.t1.exon4Ggra11099.t1.exon4Gracilaria gracilis GNS1m maleexontig00000207_pilon 129055..129413 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11099.t1.start1Ggra11099.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000207_pilon 128502..128504 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11099.t1.intron1Ggra11099.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000207_pilon 128505..128664 +
Ggra11099.t1.intron2Ggra11099.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000207_pilon 128728..128937 +
Ggra11099.t1.intron3Ggra11099.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000207_pilon 128957..129054 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11099.t1.stop1Ggra11099.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000207_pilon 129411..129413 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11099.t1 ID=Ggra11099.t1|Name=Ggra11099.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=148bp
MPTRFHHNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRINFDKYHP
GYFGKVGMRYFHKTNNKYYCPSINLDKIWTLVPEDIRLKYKNDKENAPVL
DVTERGFFKVLGKGRLPDQPIIVKAKFFSKGAEEKIRATGGACILTA*
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spliced messenger RNA

>Ggra11099.t1 ID=Ggra11099.t1|Name=Ggra11099.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=444bp|location=Sequence derived from alignment at tig00000207_pilon:128502..129413+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGACCCGTTTTCACCATAATCGAAAGAAGCGTGGACATGTCTCTGC
TGGACATGGGCGTATTGGAAAACATCGTAAGCATCCCGGTGGCCGTGGTA
ACGCCGGTGGTCAGCACCATCACCGAATCAACTTTGATAAGTACCATCCT
GGTTACTTCGGAAAGGTTGGTATGAGGTACTTTCACAAGACCAATAATAA
GTACTACTGTCCCTCAATCAACCTTGACAAGATTTGGACACTAGTTCCTG
AAGACATTCGCTTGAAGTACAAGAATGACAAGGAAAATGCTCCCGTGCTT
GATGTCACAGAAAGAGGTTTCTTTAAGGTGCTCGGAAAAGGAAGACTACC
GGATCAACCCATTATTGTTAAGGCAAAGTTTTTCTCGAAGGGAGCGGAGG
AGAAGATCAGGGCCACTGGAGGCGCTTGTATCCTTACTGCCTAA
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protein sequence of Ggra11099.t1

>Ggra11099.t1 ID=Ggra11099.t1|Name=Ggra11099.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=148bp
MPTRFHHNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGQHHHRINFDKYHP
GYFGKVGMRYFHKTNNKYYCPSINLDKIWTLVPEDIRLKYKNDKENAPVL
DVTERGFFKVLGKGRLPDQPIIVKAKFFSKGAEEKIRATGGACILTA*
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mRNA from alignment at tig00000207_pilon:128502..129413+

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11099.t1 ID=Ggra11099.t1|Name=Ggra11099.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=912bp|location=Sequence derived from alignment at tig00000207_pilon:128502..129413+ (Gracilaria gracilis GNS1m male)
ATGGTTCGTTCCGATATTCCGATCCTATAACCCCGTACAGCTACTGCCAA
AGCGATTTGCTCATACAAGCATTTATGTACTACTCGACATGGGATGAATG
CTAACTGATCAACTCTTCTACTTTACTTTGGCTTGATTATCTGCTTGCGC
TCCTGCTTTGTAGCCGACCCGTTTTCACCATAATCGAAAGAAGCGTGGAC
ATGTCTCTGCTGGACATGGGCGTATTGTAAGTTACACACTTCGCGATCGA
TGCAACTGCTCCGAACCATTGAAAGCTACATCTCTAGCGATGCCTGAGAG
ACCTTGAATCAGAAGGTCATCCCGCATATTCGGTACCCGCATCTCATAGT
TTCGCTCGATTCTAACCGTGGTATCACTTATCTGGCGTGCGACGAATTCC
CCTATTGCGCCCCGTTCATCTTATCCGTATCGTTAGGGAAAACATCGTAA
GCATCGTACGTTAATAGCTTTCAAGTCACTTGATTCTTTTTTGCGTCAAT
GATGAAGTTCCAGAAACTAACCTTTTGGAATGTATACATTTATCCTTAAA
CAGCCGGTGGCCGTGGTAACGCCGGTGGTCAGCACCATCACCGAATCAAC
TTTGATAAGTACCATCCTGGTTACTTCGGAAAGGTTGGTATGAGGTACTT
TCACAAGACCAATAATAAGTACTACTGTCCCTCAATCAACCTTGACAAGA
TTTGGACACTAGTTCCTGAAGACATTCGCTTGAAGTACAAGAATGACAAG
GAAAATGCTCCCGTGCTTGATGTCACAGAAAGAGGTTTCTTTAAGGTGCT
CGGAAAAGGAAGACTACCGGATCAACCCATTATTGTTAAGGCAAAGTTTT
TCTCGAAGGGAGCGGAGGAGAAGATCAGGGCCACTGGAGGCGCTTGTATC
CTTACTGCCTAA
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Coding sequence (CDS) from alignment at tig00000207_pilon:128502..129413+

>Ggra11099.t1 ID=Ggra11099.t1|Name=Ggra11099.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=444bp|location=Sequence derived from alignment at tig00000207_pilon:128502..129413+ (Gracilaria gracilis GNS1m male)
ATGCCGACCCGTTTTCACCATAATCGAAAGAAGCGTGGACATGTCTCTGC
TGGACATGGGCGTATTGGAAAACATCGTAAGCATCCCGGTGGCCGTGGTA
ACGCCGGTGGTCAGCACCATCACCGAATCAACTTTGATAAGTACCATCCT
GGTTACTTCGGAAAGGTTGGTATGAGGTACTTTCACAAGACCAATAATAA
GTACTACTGTCCCTCAATCAACCTTGACAAGATTTGGACACTAGTTCCTG
AAGACATTCGCTTGAAGTACAAGAATGACAAGGAAAATGCTCCCGTGCTT
GATGTCACAGAAAGAGGTTTCTTTAAGGTGCTCGGAAAAGGAAGACTACC
GGATCAACCCATTATTGTTAAGGCAAAGTTTTTCTCGAAGGGAGCGGAGG
AGAAGATCAGGGCCACTGGAGGCGCTTGTATCCTTACTGCCTAA
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