Ggra11070.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11070.t1
Unique NameGgra11070.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length148
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000207_piloncontigtig00000207_pilon:46154..46597 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4432.XP_010256948.1
PFAMsRibosomal_S11
Max annot lvl35493|Streptophyta
KEGG koko:K02955
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0000028,GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0016070,GO:0016072,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030490,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042255,GO:0042274,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0048027,GO:0065003,GO:0070013,GO:0070181,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue6.8e-81
EggNOG OGsCOG0100@1|root,KOG0407@2759|Eukaryota,37SRM@33090|Viridiplantae,3GCV6@35493|Streptophyta
DescriptionBelongs to the universal ribosomal protein uS11 family
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11070Ggra11070Gracilaria gracilis GNS1m malegenetig00000207_pilon 46154..46597 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11070.t1.start1Ggra11070.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000207_pilon 46154..46156 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11070.t1.CDS1Ggra11070.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000207_pilon 46154..46597 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11070.t1.exon1Ggra11070.t1.exon1Gracilaria gracilis GNS1m maleexontig00000207_pilon 46154..46597 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11070.t1.stop1Ggra11070.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000207_pilon 46595..46597 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11070.t1Ggra11070.t1Gracilaria gracilis GNS1m malepolypeptidetig00000207_pilon 46154..46597 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11070.t1 ID=Ggra11070.t1|Name=Ggra11070.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=148bp
MSKKIRNDEPLKLGPTLRDGENCFGVCHLFASFNDTFIHVTDLSGRETLV
RRTGGMEVKADRDESSPYAAMMAAQKVAERLKQLGITAIHIKLRATGGNT
TKTPGPGAQSAMRALARSGLKIGRIEDVTPIPTDSTRKKGGRRGRRL*
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spliced messenger RNA

>Ggra11070.t1 ID=Ggra11070.t1|Name=Ggra11070.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=444bp|location=Sequence derived from alignment at tig00000207_pilon:46154..46597+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGAAGAAGATTCGCAATGACGAGCCATTGAAGCTCGGCCCGACCCT
TCGAGATGGGGAGAACTGCTTCGGCGTATGCCATCTTTTTGCCTCCTTCA
ATGATACATTCATTCACGTCACCGATTTGTCAGGAAGAGAAACATTGGTT
CGTCGTACAGGAGGTATGGAAGTGAAGGCCGATCGCGATGAGAGTTCTCC
GTACGCGGCTATGATGGCGGCTCAGAAGGTTGCTGAGAGACTGAAGCAGC
TGGGCATCACTGCAATTCACATCAAGCTTCGTGCTACTGGAGGGAATACC
ACCAAGACGCCTGGTCCTGGCGCTCAGTCTGCGATGCGTGCTCTTGCTCG
TTCTGGGTTGAAGATTGGCCGTATTGAGGACGTTACCCCGATCCCTACCG
ACTCTACAAGGAAGAAGGGTGGTCGCCGCGGTCGTCGCCTCTAA
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protein sequence of Ggra11070.t1

>Ggra11070.t1 ID=Ggra11070.t1|Name=Ggra11070.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=148bp
MSKKIRNDEPLKLGPTLRDGENCFGVCHLFASFNDTFIHVTDLSGRETLV
RRTGGMEVKADRDESSPYAAMMAAQKVAERLKQLGITAIHIKLRATGGNT
TKTPGPGAQSAMRALARSGLKIGRIEDVTPIPTDSTRKKGGRRGRRL*
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mRNA from alignment at tig00000207_pilon:46154..46597+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11070.t1 ID=Ggra11070.t1|Name=Ggra11070.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=444bp|location=Sequence derived from alignment at tig00000207_pilon:46154..46597+ (Gracilaria gracilis GNS1m male)
ATGTCGAAGAAGATTCGCAATGACGAGCCATTGAAGCTCGGCCCGACCCT
TCGAGATGGGGAGAACTGCTTCGGCGTATGCCATCTTTTTGCCTCCTTCA
ATGATACATTCATTCACGTCACCGATTTGTCAGGAAGAGAAACATTGGTT
CGTCGTACAGGAGGTATGGAAGTGAAGGCCGATCGCGATGAGAGTTCTCC
GTACGCGGCTATGATGGCGGCTCAGAAGGTTGCTGAGAGACTGAAGCAGC
TGGGCATCACTGCAATTCACATCAAGCTTCGTGCTACTGGAGGGAATACC
ACCAAGACGCCTGGTCCTGGCGCTCAGTCTGCGATGCGTGCTCTTGCTCG
TTCTGGGTTGAAGATTGGCCGTATTGAGGACGTTACCCCGATCCCTACCG
ACTCTACAAGGAAGAAGGGTGGTCGCCGCGGTCGTCGCCTCTAA
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Coding sequence (CDS) from alignment at tig00000207_pilon:46154..46597+

>Ggra11070.t1 ID=Ggra11070.t1|Name=Ggra11070.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=444bp|location=Sequence derived from alignment at tig00000207_pilon:46154..46597+ (Gracilaria gracilis GNS1m male)
ATGTCGAAGAAGATTCGCAATGACGAGCCATTGAAGCTCGGCCCGACCCT
TCGAGATGGGGAGAACTGCTTCGGCGTATGCCATCTTTTTGCCTCCTTCA
ATGATACATTCATTCACGTCACCGATTTGTCAGGAAGAGAAACATTGGTT
CGTCGTACAGGAGGTATGGAAGTGAAGGCCGATCGCGATGAGAGTTCTCC
GTACGCGGCTATGATGGCGGCTCAGAAGGTTGCTGAGAGACTGAAGCAGC
TGGGCATCACTGCAATTCACATCAAGCTTCGTGCTACTGGAGGGAATACC
ACCAAGACGCCTGGTCCTGGCGCTCAGTCTGCGATGCGTGCTCTTGCTCG
TTCTGGGTTGAAGATTGGCCGTATTGAGGACGTTACCCCGATCCCTACCG
ACTCTACAAGGAAGAAGGGTGGTCGCCGCGGTCGTCGCCTCTAA
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