Ggra608.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra608.t1
Unique NameGgra608.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length355
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000203_piloncontigtig00000203_pilon:138294..139489 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702521.1
Preferred nameTMEM259
PFAMsMembralin
Max annot lvl2759|Eukaryota
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006950,GO:0008150,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010604,GO:0010941,GO:0012505,GO:0019222,GO:0030162,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0032268,GO:0032270,GO:0033554,GO:0034976,GO:0042176,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045732,GO:0045862,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051716,GO:0060255,GO:0060548,GO:0061136,GO:0065007,GO:0080090,GO:0080134,GO:0080135,GO:1901214,GO:1901215,GO:1901800,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1904292,GO:1904294,GO:1905897,GO:1905898
Evalue3.66e-50
EggNOG OGsKOG2092@1|root,KOG2092@2759|Eukaryota
Descriptionpositive regulation of ERAD pathway
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra608Ggra608Gracilaria gracilis GNS1m malegenetig00000203_pilon 138294..139489 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra608.t1Ggra608.t1Gracilaria gracilis GNS1m malepolypeptidetig00000203_pilon 138294..139489 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra608.t1.start1Ggra608.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000203_pilon 138294..138296 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra608.t1.CDS1Ggra608.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000203_pilon 138294..138613 +
Ggra608.t1.CDS2Ggra608.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000203_pilon 138745..139489 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra608.t1.exon1Ggra608.t1.exon1Gracilaria gracilis GNS1m maleexontig00000203_pilon 138294..138613 +
Ggra608.t1.exon2Ggra608.t1.exon2Gracilaria gracilis GNS1m maleexontig00000203_pilon 138745..139489 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra608.t1.intron1Ggra608.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000203_pilon 138614..138744 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra608.t1.stop1Ggra608.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000203_pilon 139487..139489 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra608.t1 ID=Ggra608.t1|Name=Ggra608.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=355bp
MASASTTLLRPYSSRVHAAHAAHAASHETLMASMMARSTPRVIFRSQLVR
HSVTALELLAAINAIAMFITLCALHVRFVRHDGCASVLNDSDLVPYRSTE
QEPPIIDEYDKCLGDPIQRFLLAHFVGYETIAVNAFARMRRNLHDANGYV
FVTHTKRLLNLMHADPIMSIDDLPLLYRIFVRIVWKAGAIMTACFIMCTT
AALVHFSLKEVQLRMINLTIDLQIVMRLQQSYGRVLVQYAIDALVFVPII
AGMLFFLFEFFDDQALAFSVLVIAWLCAFAASGSTRHWISRVYLPRLFFC
YFGAFHVYFFSFPLGFSWLAFATSIAFMVHAALTVWNHCELPVLRRQRSF
QSPD*
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spliced messenger RNA

>Ggra608.t1 ID=Ggra608.t1|Name=Ggra608.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1065bp|location=Sequence derived from alignment at tig00000203_pilon:138294..139489+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCGGCGTCCACCACGCTGTTGCGCCCGTACTCCAGCCGCGTGCA
CGCCGCACACGCCGCGCACGCCGCTTCCCATGAGACGCTCATGGCGTCCA
TGATGGCGCGCTCCACGCCCAGAGTCATCTTTCGCTCACAGCTGGTACGC
CACTCCGTTACCGCCCTGGAGCTTCTCGCTGCTATCAACGCCATTGCCAT
GTTTATCACGCTGTGTGCGCTACATGTTCGCTTTGTCAGGCACGATGGCT
GTGCGTCCGTGTTGAACGACTCTGATCTCGTTCCGTATCGCTCCACTGAG
CAGGAGCCGCCCATCATCGATGAGTACGACAAGTGTCTCGGCGATCCGAT
ACAGAGGTTTCTGCTGGCGCATTTCGTGGGCTATGAAACCATTGCGGTCA
ACGCGTTTGCCAGGATGAGACGCAACCTGCACGATGCGAACGGATACGTA
TTCGTCACACACACCAAACGTCTTCTCAACCTCATGCACGCCGACCCCAT
AATGTCAATTGACGATCTGCCGCTGCTGTACAGAATCTTCGTGAGAATTG
TGTGGAAGGCAGGCGCAATAATGACCGCATGCTTCATCATGTGTACCACT
GCCGCGCTTGTTCACTTTTCGCTCAAAGAAGTACAGCTTCGCATGATAAA
CCTTACCATCGACTTGCAAATCGTTATGCGCTTACAACAAAGTTATGGCC
GAGTGCTCGTTCAATACGCCATTGATGCGCTGGTATTCGTGCCCATCATT
GCCGGTATGCTGTTCTTCCTGTTTGAGTTTTTCGACGATCAGGCATTAGC
ATTTTCCGTGCTTGTGATAGCGTGGTTGTGTGCATTCGCGGCAAGCGGCA
GTACTCGTCATTGGATTAGTCGCGTTTACCTGCCTCGTCTTTTCTTTTGC
TACTTCGGTGCTTTTCATGTGTACTTCTTCTCGTTCCCTCTTGGCTTCAG
TTGGCTTGCATTCGCAACCAGTATTGCGTTTATGGTTCACGCTGCTTTAA
CAGTCTGGAACCACTGCGAGCTACCTGTATTACGACGACAACGCAGTTTT
CAGTCCCCTGACTAG
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protein sequence of Ggra608.t1

>Ggra608.t1 ID=Ggra608.t1|Name=Ggra608.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=355bp
MASASTTLLRPYSSRVHAAHAAHAASHETLMASMMARSTPRVIFRSQLVR
HSVTALELLAAINAIAMFITLCALHVRFVRHDGCASVLNDSDLVPYRSTE
QEPPIIDEYDKCLGDPIQRFLLAHFVGYETIAVNAFARMRRNLHDANGYV
FVTHTKRLLNLMHADPIMSIDDLPLLYRIFVRIVWKAGAIMTACFIMCTT
AALVHFSLKEVQLRMINLTIDLQIVMRLQQSYGRVLVQYAIDALVFVPII
AGMLFFLFEFFDDQALAFSVLVIAWLCAFAASGSTRHWISRVYLPRLFFC
YFGAFHVYFFSFPLGFSWLAFATSIAFMVHAALTVWNHCELPVLRRQRSF
QSPD*
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mRNA from alignment at tig00000203_pilon:138294..139489+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra608.t1 ID=Ggra608.t1|Name=Ggra608.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1196bp|location=Sequence derived from alignment at tig00000203_pilon:138294..139489+ (Gracilaria gracilis GNS1m male)
ATGGCGTCGGCGTCCACCACGCTGTTGCGCCCGTACTCCAGCCGCGTGCA
CGCCGCACACGCCGCGCACGCCGCTTCCCATGAGACGCTCATGGCGTCCA
TGATGGCGCGCTCCACGCCCAGAGTCATCTTTCGCTCACAGCTGGTACGC
CACTCCGTTACCGCCCTGGAGCTTCTCGCTGCTATCAACGCCATTGCCAT
GTTTATCACGCTGTGTGCGCTACATGTTCGCTTTGTCAGGCACGATGGCT
GTGCGTCCGTGTTGAACGACTCTGATCTCGTTCCGTATCGCTCCACTGAG
CAGGAGCCGCCCATCATCGAGTTTGTCATTCTGCCCGCGCGCGCTGTAGT
GCTCCACACAGCTTTCGCTTCTCACGGGAGCGTGGCTTCCTGCTGCTTTC
CGACTCTTCCCTTGCGCACTTCAACATATCTGTGCGTCGCATTACCGTCA
GTGAGTACGACAAGTGTCTCGGCGATCCGATACAGAGGTTTCTGCTGGCG
CATTTCGTGGGCTATGAAACCATTGCGGTCAACGCGTTTGCCAGGATGAG
ACGCAACCTGCACGATGCGAACGGATACGTATTCGTCACACACACCAAAC
GTCTTCTCAACCTCATGCACGCCGACCCCATAATGTCAATTGACGATCTG
CCGCTGCTGTACAGAATCTTCGTGAGAATTGTGTGGAAGGCAGGCGCAAT
AATGACCGCATGCTTCATCATGTGTACCACTGCCGCGCTTGTTCACTTTT
CGCTCAAAGAAGTACAGCTTCGCATGATAAACCTTACCATCGACTTGCAA
ATCGTTATGCGCTTACAACAAAGTTATGGCCGAGTGCTCGTTCAATACGC
CATTGATGCGCTGGTATTCGTGCCCATCATTGCCGGTATGCTGTTCTTCC
TGTTTGAGTTTTTCGACGATCAGGCATTAGCATTTTCCGTGCTTGTGATA
GCGTGGTTGTGTGCATTCGCGGCAAGCGGCAGTACTCGTCATTGGATTAG
TCGCGTTTACCTGCCTCGTCTTTTCTTTTGCTACTTCGGTGCTTTTCATG
TGTACTTCTTCTCGTTCCCTCTTGGCTTCAGTTGGCTTGCATTCGCAACC
AGTATTGCGTTTATGGTTCACGCTGCTTTAACAGTCTGGAACCACTGCGA
GCTACCTGTATTACGACGACAACGCAGTTTTCAGTCCCCTGACTAG
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Coding sequence (CDS) from alignment at tig00000203_pilon:138294..139489+

>Ggra608.t1 ID=Ggra608.t1|Name=Ggra608.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1065bp|location=Sequence derived from alignment at tig00000203_pilon:138294..139489+ (Gracilaria gracilis GNS1m male)
ATGGCGTCGGCGTCCACCACGCTGTTGCGCCCGTACTCCAGCCGCGTGCA
CGCCGCACACGCCGCGCACGCCGCTTCCCATGAGACGCTCATGGCGTCCA
TGATGGCGCGCTCCACGCCCAGAGTCATCTTTCGCTCACAGCTGGTACGC
CACTCCGTTACCGCCCTGGAGCTTCTCGCTGCTATCAACGCCATTGCCAT
GTTTATCACGCTGTGTGCGCTACATGTTCGCTTTGTCAGGCACGATGGCT
GTGCGTCCGTGTTGAACGACTCTGATCTCGTTCCGTATCGCTCCACTGAG
CAGGAGCCGCCCATCATCGATGAGTACGACAAGTGTCTCGGCGATCCGAT
ACAGAGGTTTCTGCTGGCGCATTTCGTGGGCTATGAAACCATTGCGGTCA
ACGCGTTTGCCAGGATGAGACGCAACCTGCACGATGCGAACGGATACGTA
TTCGTCACACACACCAAACGTCTTCTCAACCTCATGCACGCCGACCCCAT
AATGTCAATTGACGATCTGCCGCTGCTGTACAGAATCTTCGTGAGAATTG
TGTGGAAGGCAGGCGCAATAATGACCGCATGCTTCATCATGTGTACCACT
GCCGCGCTTGTTCACTTTTCGCTCAAAGAAGTACAGCTTCGCATGATAAA
CCTTACCATCGACTTGCAAATCGTTATGCGCTTACAACAAAGTTATGGCC
GAGTGCTCGTTCAATACGCCATTGATGCGCTGGTATTCGTGCCCATCATT
GCCGGTATGCTGTTCTTCCTGTTTGAGTTTTTCGACGATCAGGCATTAGC
ATTTTCCGTGCTTGTGATAGCGTGGTTGTGTGCATTCGCGGCAAGCGGCA
GTACTCGTCATTGGATTAGTCGCGTTTACCTGCCTCGTCTTTTCTTTTGC
TACTTCGGTGCTTTTCATGTGTACTTCTTCTCGTTCCCTCTTGGCTTCAG
TTGGCTTGCATTCGCAACCAGTATTGCGTTTATGGTTCACGCTGCTTTAA
CAGTCTGGAACCACTGCGAGCTACCTGTATTACGACGACAACGCAGTTTT
CAGTCCCCTGACTAG
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