Ggra595.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra595.t1
Unique NameGgra595.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length304
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000203_piloncontigtig00000203_pilon:40679..41590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705105.1
Preferred nameTSC13
PFAMsABC_membrane,ABC_tran,Steroid_dh
Max annot lvl2759|Eukaryota
KEGG rclassRC00052,RC00120
KEGG koko:K05658,ko:K10258
KEGG TC3.A.1.201
KEGG ReactionR07761,R09449,R10828
KEGG Pathwayko00062,ko01040,ko01110,ko01212,ko02010,ko04976,ko05206,ko05226,map00062,map01040,map01110,map01212,map02010,map04976,map05206,map05226
KEGG ModuleM00415
GOsGO:0000038,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005789,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0016631,GO:0019752,GO:0030497,GO:0031224,GO:0031984,GO:0032787,GO:0042175,GO:0042761,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:0072330,GO:0098827,GO:1901576
Evalue3.2e-91
EggNOG OGsCOG1132@1|root,KOG1639@1|root,KOG0055@2759|Eukaryota,KOG1639@2759|Eukaryota
EC1.3.1.93,3.6.3.44
Descriptionvery-long-chain enoyl-CoA reductase activity
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko02000,ko04090,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra595Ggra595Gracilaria gracilis GNS1m malegenetig00000203_pilon 40679..41590 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra595.t1.start1Ggra595.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000203_pilon 40679..40681 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra595.t1.CDS1Ggra595.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000203_pilon 40679..41590 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra595.t1.exon1Ggra595.t1.exon1Gracilaria gracilis GNS1m maleexontig00000203_pilon 40679..41590 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra595.t1.stop1Ggra595.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000203_pilon 41588..41590 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra595.t1Ggra595.t1Gracilaria gracilis GNS1m malepolypeptidetig00000203_pilon 40679..41590 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra595.t1 ID=Ggra595.t1|Name=Ggra595.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=304bp
MRVSVETRSGRDLGSYVLKDGSTVAVLQKDFHQAHKKYYPDRQRFYVKQD
SSTAKKPTALSVEDTLEDGCTLIFKDLGPQILWKTVFVVEYLGPLLLYPL
FYIQPSWIYSGSYPPISSEAREVQLAALIAWSFHYGKREFETLFVHRFSH
ATMPLRNLFKNCSYYWGFAAYVAYFVNHPLYTPPSLGNFIVGMCIFYFME
VGNFTAHWTLRTLRPPGTKVRKIPRGGLFELVSCPNYTYEIMSWLGFNIM
TSTLPGILFMFAGAFQMLIWAQGKHRRYKKEFDGKDDRPLYPPNRKVLVP
FIY*
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spliced messenger RNA

>Ggra595.t1 ID=Ggra595.t1|Name=Ggra595.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=912bp|location=Sequence derived from alignment at tig00000203_pilon:40679..41590+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGGTTTCGGTCGAGACACGTAGTGGGCGCGATCTTGGGTCCTATGT
GCTCAAAGACGGCAGCACAGTCGCCGTTCTCCAAAAAGACTTTCATCAAG
CTCACAAGAAGTACTATCCAGATCGACAACGCTTCTACGTGAAGCAAGAT
TCTAGTACCGCTAAAAAGCCAACTGCACTCTCCGTTGAAGACACCTTAGA
AGACGGCTGTACGCTTATCTTCAAAGATCTTGGTCCGCAGATTTTGTGGA
AGACTGTGTTTGTTGTAGAGTATCTTGGTCCTTTGTTGCTTTATCCTTTG
TTTTATATCCAGCCTTCTTGGATCTATAGTGGTTCTTATCCTCCAATTTC
GTCAGAGGCAAGAGAGGTACAACTTGCTGCGCTGATCGCATGGAGTTTCC
ATTATGGTAAGAGAGAATTTGAAACTCTATTCGTTCACCGCTTTTCTCAT
GCTACTATGCCACTTCGAAACTTGTTCAAGAATTGCTCGTACTACTGGGG
TTTTGCAGCATACGTTGCGTACTTCGTTAATCATCCACTGTACACCCCAC
CATCTTTAGGAAATTTTATAGTTGGTATGTGTATCTTCTATTTTATGGAG
GTTGGTAACTTTACAGCCCACTGGACGCTTAGGACGTTGCGACCGCCTGG
AACGAAGGTCAGGAAGATTCCTCGTGGCGGTTTGTTCGAATTGGTCTCAT
GTCCGAACTATACGTATGAGATCATGTCGTGGTTAGGGTTCAACATTATG
ACAAGCACTCTTCCTGGTATATTGTTTATGTTTGCTGGTGCATTTCAAAT
GCTAATCTGGGCTCAGGGGAAGCATCGCCGGTACAAGAAAGAGTTCGACG
GAAAGGACGATCGTCCATTGTATCCACCAAATAGAAAGGTTCTTGTTCCA
TTCATCTACTGA
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protein sequence of Ggra595.t1

>Ggra595.t1 ID=Ggra595.t1|Name=Ggra595.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=304bp
MRVSVETRSGRDLGSYVLKDGSTVAVLQKDFHQAHKKYYPDRQRFYVKQD
SSTAKKPTALSVEDTLEDGCTLIFKDLGPQILWKTVFVVEYLGPLLLYPL
FYIQPSWIYSGSYPPISSEAREVQLAALIAWSFHYGKREFETLFVHRFSH
ATMPLRNLFKNCSYYWGFAAYVAYFVNHPLYTPPSLGNFIVGMCIFYFME
VGNFTAHWTLRTLRPPGTKVRKIPRGGLFELVSCPNYTYEIMSWLGFNIM
TSTLPGILFMFAGAFQMLIWAQGKHRRYKKEFDGKDDRPLYPPNRKVLVP
FIY*
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mRNA from alignment at tig00000203_pilon:40679..41590+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra595.t1 ID=Ggra595.t1|Name=Ggra595.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=912bp|location=Sequence derived from alignment at tig00000203_pilon:40679..41590+ (Gracilaria gracilis GNS1m male)
ATGAGGGTTTCGGTCGAGACACGTAGTGGGCGCGATCTTGGGTCCTATGT
GCTCAAAGACGGCAGCACAGTCGCCGTTCTCCAAAAAGACTTTCATCAAG
CTCACAAGAAGTACTATCCAGATCGACAACGCTTCTACGTGAAGCAAGAT
TCTAGTACCGCTAAAAAGCCAACTGCACTCTCCGTTGAAGACACCTTAGA
AGACGGCTGTACGCTTATCTTCAAAGATCTTGGTCCGCAGATTTTGTGGA
AGACTGTGTTTGTTGTAGAGTATCTTGGTCCTTTGTTGCTTTATCCTTTG
TTTTATATCCAGCCTTCTTGGATCTATAGTGGTTCTTATCCTCCAATTTC
GTCAGAGGCAAGAGAGGTACAACTTGCTGCGCTGATCGCATGGAGTTTCC
ATTATGGTAAGAGAGAATTTGAAACTCTATTCGTTCACCGCTTTTCTCAT
GCTACTATGCCACTTCGAAACTTGTTCAAGAATTGCTCGTACTACTGGGG
TTTTGCAGCATACGTTGCGTACTTCGTTAATCATCCACTGTACACCCCAC
CATCTTTAGGAAATTTTATAGTTGGTATGTGTATCTTCTATTTTATGGAG
GTTGGTAACTTTACAGCCCACTGGACGCTTAGGACGTTGCGACCGCCTGG
AACGAAGGTCAGGAAGATTCCTCGTGGCGGTTTGTTCGAATTGGTCTCAT
GTCCGAACTATACGTATGAGATCATGTCGTGGTTAGGGTTCAACATTATG
ACAAGCACTCTTCCTGGTATATTGTTTATGTTTGCTGGTGCATTTCAAAT
GCTAATCTGGGCTCAGGGGAAGCATCGCCGGTACAAGAAAGAGTTCGACG
GAAAGGACGATCGTCCATTGTATCCACCAAATAGAAAGGTTCTTGTTCCA
TTCATCTACTGA
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Coding sequence (CDS) from alignment at tig00000203_pilon:40679..41590+

>Ggra595.t1 ID=Ggra595.t1|Name=Ggra595.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=912bp|location=Sequence derived from alignment at tig00000203_pilon:40679..41590+ (Gracilaria gracilis GNS1m male)
ATGAGGGTTTCGGTCGAGACACGTAGTGGGCGCGATCTTGGGTCCTATGT
GCTCAAAGACGGCAGCACAGTCGCCGTTCTCCAAAAAGACTTTCATCAAG
CTCACAAGAAGTACTATCCAGATCGACAACGCTTCTACGTGAAGCAAGAT
TCTAGTACCGCTAAAAAGCCAACTGCACTCTCCGTTGAAGACACCTTAGA
AGACGGCTGTACGCTTATCTTCAAAGATCTTGGTCCGCAGATTTTGTGGA
AGACTGTGTTTGTTGTAGAGTATCTTGGTCCTTTGTTGCTTTATCCTTTG
TTTTATATCCAGCCTTCTTGGATCTATAGTGGTTCTTATCCTCCAATTTC
GTCAGAGGCAAGAGAGGTACAACTTGCTGCGCTGATCGCATGGAGTTTCC
ATTATGGTAAGAGAGAATTTGAAACTCTATTCGTTCACCGCTTTTCTCAT
GCTACTATGCCACTTCGAAACTTGTTCAAGAATTGCTCGTACTACTGGGG
TTTTGCAGCATACGTTGCGTACTTCGTTAATCATCCACTGTACACCCCAC
CATCTTTAGGAAATTTTATAGTTGGTATGTGTATCTTCTATTTTATGGAG
GTTGGTAACTTTACAGCCCACTGGACGCTTAGGACGTTGCGACCGCCTGG
AACGAAGGTCAGGAAGATTCCTCGTGGCGGTTTGTTCGAATTGGTCTCAT
GTCCGAACTATACGTATGAGATCATGTCGTGGTTAGGGTTCAACATTATG
ACAAGCACTCTTCCTGGTATATTGTTTATGTTTGCTGGTGCATTTCAAAT
GCTAATCTGGGCTCAGGGGAAGCATCGCCGGTACAAGAAAGAGTTCGACG
GAAAGGACGATCGTCCATTGTATCCACCAAATAGAAAGGTTCTTGTTCCA
TTCATCTACTGA
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