Ggra10750.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10750.t1
Unique NameGgra10750.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length305
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000200_piloncontigtig00000200_pilon:100019..101088 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707783.1
Preferred nameABCF3
PFAMsABC_tran,ABC_tran_Xtn
Max annot lvl2759|Eukaryota
KEGG koko:K06158
GOsGO:0000166,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006417,GO:0006448,GO:0008144,GO:0008150,GO:0009889,GO:0009893,GO:0010468,GO:0010556,GO:0010562,GO:0010604,GO:0010608,GO:0010941,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019220,GO:0019222,GO:0022626,GO:0030554,GO:0031323,GO:0031325,GO:0031326,GO:0031399,GO:0031401,GO:0032268,GO:0032270,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033135,GO:0033138,GO:0034248,GO:0035639,GO:0036094,GO:0042325,GO:0042327,GO:0042981,GO:0043067,GO:0043167,GO:0043168,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0045937,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0097367,GO:1900247,GO:1901265,GO:1901363,GO:1990904,GO:2000112,GO:2000765
Evalue2.49e-30
EggNOG OGsCOG0488@1|root,KOG0062@2759|Eukaryota
DescriptionATPase activity
COG categoryJ
BRITEko00000,ko03012
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10750Ggra10750Gracilaria gracilis GNS1m malegenetig00000200_pilon 100019..101088 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10750.t1Ggra10750.t1Gracilaria gracilis GNS1m malepolypeptidetig00000200_pilon 100019..101088 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10750.t1.start1Ggra10750.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000200_pilon 100019..100021 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10750.t1.CDS1Ggra10750.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000200_pilon 100019..100175 +
Ggra10750.t1.CDS2Ggra10750.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000200_pilon 100331..101088 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10750.t1.exon1Ggra10750.t1.exon1Gracilaria gracilis GNS1m maleexontig00000200_pilon 100019..100175 +
Ggra10750.t1.exon2Ggra10750.t1.exon2Gracilaria gracilis GNS1m maleexontig00000200_pilon 100331..101088 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10750.t1.intron1Ggra10750.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000200_pilon 100176..100330 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10750.t1.stop1Ggra10750.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000200_pilon 101086..101088 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10750.t1 ID=Ggra10750.t1|Name=Ggra10750.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=305bp
MFTYPGISAIYQGQTLRLSRNGATSSLDRCIIKIKIRCQTGVVTPTTTVL
ELHTAAAEDEVVKVVSIFLPHLNPDISSSKSQEVARDILRQLHGAPTEDQ
TREKLVRLTKATRLGASVGIDAGRRKGTRARQRVGNANQTLDRSAEAERA
KEASAARRARRVGAQVKTYQSEATVSSTKAKYTPSSSDVHIEGLDLSFGR
MTLLDGAELHIPYGRRVGIIGRNGCGNTTLMRAIVRRELPIPEDMDIVYV
ELEIAGSEKTPLEVVLESEFERQELLAEKEELNDEKLKEAGDELDPSVAA
RLTE*
back to top

spliced messenger RNA

>Ggra10750.t1 ID=Ggra10750.t1|Name=Ggra10750.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=915bp|location=Sequence derived from alignment at tig00000200_pilon:100019..101088+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTACATACCCCGGCATATCGGCGATATATCAAGGTCAGACCCTGCG
CCTCTCTCGGAACGGTGCTACAAGCAGTCTGGATAGATGTATAATCAAGA
TCAAGATAAGATGCCAAACCGGTGTGGTCACACCAACTACCACCGTTCTT
GAACTCCATACGGCAGCTGCGGAAGACGAAGTAGTGAAAGTGGTCTCAAT
TTTTCTTCCGCACCTGAACCCTGATATTTCTTCATCTAAAAGCCAGGAAG
TCGCCCGTGACATCCTCCGTCAGCTTCATGGAGCGCCAACAGAGGATCAA
ACAAGAGAAAAGCTCGTTCGTCTCACGAAAGCAACTCGGTTAGGAGCAAG
TGTGGGCATAGACGCAGGGAGACGTAAAGGAACCAGGGCAAGGCAACGCG
TAGGAAACGCCAACCAGACATTGGACCGCTCTGCGGAAGCTGAAAGAGCC
AAAGAAGCCTCTGCAGCACGTCGTGCGAGACGCGTGGGAGCGCAGGTAAA
GACGTACCAATCCGAAGCCACGGTAAGCAGCACAAAAGCGAAGTACACCC
CCAGTTCGAGCGATGTTCATATAGAAGGATTGGATTTGTCTTTTGGAAGG
ATGACTTTATTAGATGGAGCCGAGCTTCATATACCATACGGCAGAAGAGT
TGGAATCATCGGAAGAAATGGATGTGGTAATACAACATTGATGCGAGCGA
TTGTCCGTCGAGAACTACCAATACCAGAAGATATGGATATTGTGTATGTC
GAACTGGAAATAGCTGGCAGTGAGAAGACGCCCTTGGAGGTGGTGCTGGA
AAGCGAATTCGAGCGACAAGAGCTTCTGGCTGAAAAGGAAGAACTCAACG
ACGAGAAACTAAAGGAAGCAGGGGACGAGCTGGACCCATCTGTTGCAGCC
AGACTCACTGAGTAA
back to top

protein sequence of Ggra10750.t1

>Ggra10750.t1 ID=Ggra10750.t1|Name=Ggra10750.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=305bp
MFTYPGISAIYQGQTLRLSRNGATSSLDRCIIKIKIRCQTGVVTPTTTVL
ELHTAAAEDEVVKVVSIFLPHLNPDISSSKSQEVARDILRQLHGAPTEDQ
TREKLVRLTKATRLGASVGIDAGRRKGTRARQRVGNANQTLDRSAEAERA
KEASAARRARRVGAQVKTYQSEATVSSTKAKYTPSSSDVHIEGLDLSFGR
MTLLDGAELHIPYGRRVGIIGRNGCGNTTLMRAIVRRELPIPEDMDIVYV
ELEIAGSEKTPLEVVLESEFERQELLAEKEELNDEKLKEAGDELDPSVAA
RLTE*
back to top

mRNA from alignment at tig00000200_pilon:100019..101088+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10750.t1 ID=Ggra10750.t1|Name=Ggra10750.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1070bp|location=Sequence derived from alignment at tig00000200_pilon:100019..101088+ (Gracilaria gracilis GNS1m male)
ATGTTTACATACCCCGGCATATCGGCGATATATCAAGGTCAGACCCTGCG
CCTCTCTCGGAACGGTGCTACAAGCAGTCTGGATAGATGTATAATCAAGA
TCAAGATAAGATGCCAAACCGGTGTGGTCACACCAACTACCACCGTTCTT
GAACTCCGTACGTAGTGGTATATATATATTTCTCGTACCACGTCCTTGTT
TTGATCCTTCATTGGTCTGAAGATCCAAGCTTgagaacgagagagagaga
gagaCGTTTTTTAGCCGATCTTGATCCAGCCGTAATACAATATCTGACTT
CGGCACTCGCAGATACGGCAGCTGCGGAAGACGAAGTAGTGAAAGTGGTC
TCAATTTTTCTTCCGCACCTGAACCCTGATATTTCTTCATCTAAAAGCCA
GGAAGTCGCCCGTGACATCCTCCGTCAGCTTCATGGAGCGCCAACAGAGG
ATCAAACAAGAGAAAAGCTCGTTCGTCTCACGAAAGCAACTCGGTTAGGA
GCAAGTGTGGGCATAGACGCAGGGAGACGTAAAGGAACCAGGGCAAGGCA
ACGCGTAGGAAACGCCAACCAGACATTGGACCGCTCTGCGGAAGCTGAAA
GAGCCAAAGAAGCCTCTGCAGCACGTCGTGCGAGACGCGTGGGAGCGCAG
GTAAAGACGTACCAATCCGAAGCCACGGTAAGCAGCACAAAAGCGAAGTA
CACCCCCAGTTCGAGCGATGTTCATATAGAAGGATTGGATTTGTCTTTTG
GAAGGATGACTTTATTAGATGGAGCCGAGCTTCATATACCATACGGCAGA
AGAGTTGGAATCATCGGAAGAAATGGATGTGGTAATACAACATTGATGCG
AGCGATTGTCCGTCGAGAACTACCAATACCAGAAGATATGGATATTGTGT
ATGTCGAACTGGAAATAGCTGGCAGTGAGAAGACGCCCTTGGAGGTGGTG
CTGGAAAGCGAATTCGAGCGACAAGAGCTTCTGGCTGAAAAGGAAGAACT
CAACGACGAGAAACTAAAGGAAGCAGGGGACGAGCTGGACCCATCTGTTG
CAGCCAGACTCACTGAGTAA
back to top

Coding sequence (CDS) from alignment at tig00000200_pilon:100019..101088+

>Ggra10750.t1 ID=Ggra10750.t1|Name=Ggra10750.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=915bp|location=Sequence derived from alignment at tig00000200_pilon:100019..101088+ (Gracilaria gracilis GNS1m male)
ATGTTTACATACCCCGGCATATCGGCGATATATCAAGGTCAGACCCTGCG
CCTCTCTCGGAACGGTGCTACAAGCAGTCTGGATAGATGTATAATCAAGA
TCAAGATAAGATGCCAAACCGGTGTGGTCACACCAACTACCACCGTTCTT
GAACTCCATACGGCAGCTGCGGAAGACGAAGTAGTGAAAGTGGTCTCAAT
TTTTCTTCCGCACCTGAACCCTGATATTTCTTCATCTAAAAGCCAGGAAG
TCGCCCGTGACATCCTCCGTCAGCTTCATGGAGCGCCAACAGAGGATCAA
ACAAGAGAAAAGCTCGTTCGTCTCACGAAAGCAACTCGGTTAGGAGCAAG
TGTGGGCATAGACGCAGGGAGACGTAAAGGAACCAGGGCAAGGCAACGCG
TAGGAAACGCCAACCAGACATTGGACCGCTCTGCGGAAGCTGAAAGAGCC
AAAGAAGCCTCTGCAGCACGTCGTGCGAGACGCGTGGGAGCGCAGGTAAA
GACGTACCAATCCGAAGCCACGGTAAGCAGCACAAAAGCGAAGTACACCC
CCAGTTCGAGCGATGTTCATATAGAAGGATTGGATTTGTCTTTTGGAAGG
ATGACTTTATTAGATGGAGCCGAGCTTCATATACCATACGGCAGAAGAGT
TGGAATCATCGGAAGAAATGGATGTGGTAATACAACATTGATGCGAGCGA
TTGTCCGTCGAGAACTACCAATACCAGAAGATATGGATATTGTGTATGTC
GAACTGGAAATAGCTGGCAGTGAGAAGACGCCCTTGGAGGTGGTGCTGGA
AAGCGAATTCGAGCGACAAGAGCTTCTGGCTGAAAAGGAAGAACTCAACG
ACGAGAAACTAAAGGAAGCAGGGGACGAGCTGGACCCATCTGTTGCAGCC
AGACTCACTGAGTAA
back to top