Ggra6008.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6008.t1
Unique NameGgra6008.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length160
Homology
BLAST of Ggra6008.t1 vs. uniprot
Match: A9TVD2 (Predicted protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A9TVD2_PHYPA)

HSP 1 Score: 103 bits (258), Expect = 3.520e-25
Identity = 62/145 (42.76%), Postives = 94/145 (64.83%), Query Frame = 0
Query:   15 VLPAGTRVRITGNNRTKWDLIGRHGTVLSAQTLGGWHEVSLTDGGIVRVQRNALHVLKFPNRHTP-------PLPPRTPIAKAQANISKLNVASLRRYRSVYNL-DVANDCSKDELVGAVKKHFEKAKVNESEVISSFLRQIARR 151
            VLP  T+V +TGNNRTK  L+G HG V  A  LGGWH + LT+G  V++QRNAL V++ P+ H         P    T +  +  ++SKL VA+L+RYR  + L +V  + +K++L+ AV +HF   +++E++VIS+F+ Q A+R
Sbjct:   26 VLPRHTKVLVTGNNRTKSVLVGLHGVVTKAVGLGGWHWLVLTNGDEVKLQRNALSVIEAPSGHEEHDENEDNPFSSGTSLVLS-VDLSKLEVAALKRYRRHFKLVEVGPNSTKEQLLHAVGRHFMSQELDETQVISAFM-QAAKR 168          
BLAST of Ggra6008.t1 vs. uniprot
Match: A0A1X6NV33 (SAP30_Sin3_bdg domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NV33_PORUM)

HSP 1 Score: 105 bits (261), Expect = 1.420e-23
Identity = 84/241 (34.85%), Postives = 102/241 (42.32%), Query Frame = 0
Query:   13 DPVLPAGTRVRITGNNRTKWDLIGRHGTVLSAQTLGGWHEVSL-TDGGIVRVQRNALHVLKF-------PNRHTPPLPPRT-----------------------------------------------------------------------------------------PIAKAQANISKLNVASLRRYRSVYNLDVANDCSKDELVGAVKKHFEKAKVNESEVISSFLRQIARRGASPA 156
            D VLP G+ VRI+GNNRTK  LIG+ G V+S+QTLGGWHEVSL   GG+VRVQRNAL VL         P    P    R+                                                                                         P A   AN   L   SL RYR+VY L+VA DCS+DELV AV++HF  + V+E +VIS FLR++ R  +SPA
Sbjct:  210 DAVLPPGSLVRISGNNRTKLQLIGKVGRVVSSQTLGGWHEVSLEAGGGVVRVQRNALEVLALAPAVPGVPVHGHPTSTGRSGGXXXXXXXXXXXXXXXXXSATAPDNGSARHGHGSAPSRGNASGLVSSPADGGGSTSRAGDXKXXXXXXXXXXXXXXXXXXRLRVGGAGPGAGTVANFDALQFDSLNRYRTVYGLNVAVDCSRDELVRAVRRHFASSSVDELQVISDFLRRV-RHCSSPA 449          
BLAST of Ggra6008.t1 vs. uniprot
Match: A0A0K9PBC4 (SAP30_Sin3_bdg domain-containing protein n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9PBC4_ZOSMR)

HSP 1 Score: 87.4 bits (215), Expect = 8.220e-19
Identity = 57/147 (38.78%), Postives = 83/147 (56.46%), Query Frame = 0
Query:   15 VLPAGTRVRITGNNRTKWDLIGRHGTVLSAQTLGGWHEVSLTDGGIVRVQRNALHVLKFPNRH----------TPPLPPRTPIAKAQANISKLNVASLRRYRSVYNLDVANDCSKDELVGAVKKHFEKAKVNESEVISSFLRQIARR 151
            VLPA T+V +TGNNRTK   +G    V  A  LGGW+ + LT+G  VR+QRNAL V++ P  H          T   P R P      ++ KL++ SLR+Y   + L      S+++L+  V+KHF   +++E +VI+ FL+   RR
Sbjct:   16 VLPAHTKVLVTGNNRTKPVHVGLQAVVKKAVGLGGWYWLVLTNGDEVRLQRNALSVIEAPIEHNEEEYYREEKTVCCPKRQPPI---VDLRKLDMVSLRKYCRHFKL--LQQPSREQLIEIVEKHFSSQQLDEFQVIAGFLQASKRR 157          
BLAST of Ggra6008.t1 vs. uniprot
Match: A0A4D8ZAU6 (SAP30_Sin3_bdg domain-containing protein n=3 Tax=Salvia splendens TaxID=180675 RepID=A0A4D8ZAU6_SALSN)

HSP 1 Score: 86.7 bits (213), Expect = 6.490e-18
Identity = 55/144 (38.19%), Postives = 84/144 (58.33%), Query Frame = 0
Query:   14 PVLPAGTRVRITGNNRTKWDLIGRHGTVLSAQTLGGWHEVSLTDGGIVRVQRNALHVLKFP--NRHTPPLPPRTP-------IAKAQANISKLNVASLRRYRSVYNL-DVANDCSKDELVGAVKKHFEKAKVN---ESEVISSF 144
            P LP  T+V ITGN+RT+ DL+G  G V  A  +GGWH + L++G  V++QRNAL V + P  N     +              K   +++KL+  SLRRY   Y+L D+A++ +K++L+ A ++HF   KV+   E +VI+ F
Sbjct:   68 PGLPRHTKVTITGNSRTRKDLVGMEGVVTKAGGIGGWHWLLLSNGEKVKLQRNALTVSEPPTGNEEDDDIDDSASGSDTNHSTCKEGVDLAKLSSESLRRYCEKYHLVDIASNPTKEQLIKAAQEHFSSQKVDGDEEEQVITEF 211          
BLAST of Ggra6008.t1 vs. uniprot
Match: A0A0K9NP09 (SAP30_Sin3_bdg domain-containing protein n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9NP09_ZOSMR)

HSP 1 Score: 80.9 bits (198), Expect = 3.810e-16
Identity = 58/164 (35.37%), Postives = 86/164 (52.44%), Query Frame = 0
Query:   15 VLPAGTRVRITGNNRTKWDLIGRHGTVLSAQTLGGWHEVSLTDGGIVRVQRNALHVLKFPNR--------------HTPPLPPRTPIAKAQA-----NISKLNVASLRRYRSVYNLDVANDC--SKDELVGAVKKHFEKAKVNESEVISSFLRQIARRGASPAG 157
            VLPA T+V +TGNNRTK   IG  G V  A  LGGW+ + LT+G  V++QRNAL V++ P                +T  +   +P  KA +     ++ KL + SL RY   + L        SK++L+  V+KHF   +++E +VI+ F++   R   S  G
Sbjct:   15 VLPAHTKVLVTGNNRTKSIHIGLQGVVKKAVGLGGWYWLVLTNGDEVKLQRNALSVIEAPTENEENDEFEDDDISSYTTKI--NSPFRKASSRKLTVDLRKLEMVSLWRYCHHFRLAALMKIQPSKEQLIEVVEKHFTSQQLDEFQVIAEFIQASKRLKQSMQG 176          
BLAST of Ggra6008.t1 vs. uniprot
Match: uncharacterized protein LOC121779358 n=1 Tax=Salvia splendens TaxID=180675 RepID=UPI001C267018 (uncharacterized protein LOC121779358 n=1 Tax=Salvia splendens TaxID=180675 RepID=UPI001C267018)

HSP 1 Score: 66.2 bits (160), Expect = 9.320e-11
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 0
Query:   16 LPAGTRVRITGNNRTKWDLIGRHGTVLSAQTLGGWHEVSLTDGGIVRVQRNALHVLKFP 74
            LP  T+V ITGNNRT+ DL+G  G V  A  +GGWH + L +G  V++QRNAL VL+ P
Sbjct:   66 LPRHTKVTITGNNRTRKDLVGLEGVVTKAGGIGGWHWLELNNGEEVKLQRNALTVLEPP 124          
BLAST of Ggra6008.t1 vs. uniprot
Match: A0A1Y1HLH9 (SAP30_Sin3_bdg domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HLH9_KLENI)

HSP 1 Score: 67.0 bits (162), Expect = 2.510e-10
Identity = 31/61 (50.82%), Postives = 42/61 (68.85%), Query Frame = 0
Query:   14 PVLPAGTRVRITGNNRTKWDLIGRHGTVLSAQTLGGWHEVSLTDGGIVRVQRNALHVLKFP 74
            P LP  T+V I GN+RTK  L+G  G V  +  LGGWH + L +G +V++QRNALH+L+ P
Sbjct:   54 PSLPKDTKVLIIGNSRTKRVLVGLRGVVKKSVGLGGWHWLQLENGDLVKLQRNALHILEAP 114          
BLAST of Ggra6008.t1 vs. uniprot
Match: A0A6T6NP23 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A6T6NP23_9RHOD)

HSP 1 Score: 65.9 bits (159), Expect = 4.180e-10
Identity = 34/60 (56.67%), Postives = 41/60 (68.33%), Query Frame = 0
Query:   15 VLPAGTRVRITGNNRTKWDLIGRHGTVLSAQTLGGWHEVSLTDGG----IVRVQRNALHV 70
            +LP GT VRI GNNRTK +L G  G V++A  LGGWH VS+ D      ++RVQRNAL V
Sbjct:   12 LLPVGTVVRIRGNNRTKQELSGCQGQVVTAAPLGGWHSVSVVDKNGKKSMIRVQRNALQV 71          
BLAST of Ggra6008.t1 vs. uniprot
Match: M2Y005 (SAP30_Sin3_bdg domain-containing protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y005_GALSU)

HSP 1 Score: 65.1 bits (157), Expect = 5.860e-10
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 0
Query:   89 KAQANISKLNVASLRRYRSVYNLDVANDCSKDELVGAVKKHFEKAKVNESEVISSFLRQIAR 150
            K  A +S+LN++SLRRYR  +NL V  DCSK EL+ AVK+HF +  V+ES  I  F+ +I +
Sbjct:  131 KVAACLSRLNLSSLRRYRKAFNLKVGKDCSKTELLLAVKQHFSENDVDESSTILEFINKICK 192          
BLAST of Ggra6008.t1 vs. uniprot
Match: C1MP44 (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MP44_MICPC)

HSP 1 Score: 64.3 bits (155), Expect = 1.630e-9
Identity = 33/60 (55.00%), Postives = 38/60 (63.33%), Query Frame = 0
Query:   15 VLPAGTRVRITGNNRTKWDLIGRHGTVLSAQTLGGWHEVSLTDGGIVRVQRNALHVLKFP 74
            +LP  T+VR+TGNNRTK  L+G  G V  A  LGGWH V L  G   RVQRNA+  L  P
Sbjct:   18 LLPKHTKVRVTGNNRTKSTLVGLTGVVKKAVGLGGWHLVRLETGVDARVQRNAIVALSAP 77          
The following BLAST results are available for this feature:
BLAST of Ggra6008.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A9TVD23.520e-2542.76Predicted protein n=2 Tax=Physcomitrium patens Tax... [more]
A0A1X6NV331.420e-2334.85SAP30_Sin3_bdg domain-containing protein n=1 Tax=P... [more]
A0A0K9PBC48.220e-1938.78SAP30_Sin3_bdg domain-containing protein n=1 Tax=Z... [more]
A0A4D8ZAU66.490e-1838.19SAP30_Sin3_bdg domain-containing protein n=3 Tax=S... [more]
A0A0K9NP093.810e-1635.37SAP30_Sin3_bdg domain-containing protein n=1 Tax=Z... [more]
uncharacterized protein LOC121779358 n=1 Tax=Salvia splendens TaxID=180675 RepID=UPI001C2670189.320e-1154.24uncharacterized protein LOC121779358 n=1 Tax=Salvi... [more]
A0A1Y1HLH92.510e-1050.82SAP30_Sin3_bdg domain-containing protein n=1 Tax=K... [more]
A0A6T6NP234.180e-1056.67Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
M2Y0055.860e-1050.00SAP30_Sin3_bdg domain-containing protein n=1 Tax=G... [more]
C1MP441.630e-955.00Predicted protein n=2 Tax=Micromonas pusilla TaxID... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038291SAP30, C-terminal domain superfamilyGENE3D6.10.160.20coord: 81..156
e-value: 4.2E-19
score: 70.2
IPR025718Histone deacetylase complex subunit SAP30, Sin3 binding domainPFAMPF13867SAP30_Sin3_bdgcoord: 97..147
e-value: 3.5E-17
score: 62.4
NoneNo IPR availablePANTHERPTHR13286:SF6HISTONE DEACETYLASE COMPLEX SUBUNIT SAP30Lcoord: 15..149
IPR024145Histone deacetylase complex subunit SAP30/SAP30-likePANTHERPTHR13286SAP30coord: 15..149

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000197_piloncontigtig00000197_pilon:1016..5032 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6008.t1Ggra6008.t1Gracilaria gracilis GNS1m malemRNAtig00000197_pilon 1016..5032 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6008.t1 ID=Ggra6008.t1|Name=Ggra6008.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=160bp
MGLHPPVIYLLRDPVLPAGTRVRITGNNRTKWDLIGRHGTVLSAQTLGGW
HEVSLTDGGIVRVQRNALHVLKFPNRHTPPLPPRTPIAKAQANISKLNVA
SLRRYRSVYNLDVANDCSKDELVGAVKKHFEKAKVNESEVISSFLRQIAR
RGASPAGAE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038291SAP30_C_sf
IPR025718SAP30_Sin3-bd
IPR024145His_deAcase_SAP30/SAP30L