Ggra8633.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8633.t1
Unique NameGgra8633.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length224
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000196_piloncontigtig00000196_pilon:77418..78089 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703922.1
Preferred nameCNX2
PFAMsFer4_12,MoaC,Mob_synth_C,Radical_SAM
Max annot lvl2759|Eukaryota
KEGG rclassRC03420,RC03425
KEGG koko:K03639,ko:K20967
KEGG ReactionR09394,R11372
KEGG Pathwayko00790,ko01100,ko04122,map00790,map01100,map04122
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006732,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009507,GO:0009536,GO:0009987,GO:0018130,GO:0019538,GO:0019637,GO:0019720,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0051186,GO:0051188,GO:0051189,GO:0071704,GO:0090407,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue1.13e-69
EggNOG OGsCOG2896@1|root,KOG2876@2759|Eukaryota
EC4.1.99.22,4.6.1.17
Descriptioncyclic pyranopterin monophosphate synthase activity
COG categoryH
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8633Ggra8633Gracilaria gracilis GNS1m malegenetig00000196_pilon 77418..78089 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8633.t1.start1Ggra8633.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000196_pilon 77418..77420 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8633.t1.CDS1Ggra8633.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000196_pilon 77418..78089 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8633.t1.exon1Ggra8633.t1.exon1Gracilaria gracilis GNS1m maleexontig00000196_pilon 77418..78089 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8633.t1.stop1Ggra8633.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000196_pilon 78087..78089 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8633.t1Ggra8633.t1Gracilaria gracilis GNS1m malepolypeptidetig00000196_pilon 77418..78089 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8633.t1 ID=Ggra8633.t1|Name=Ggra8633.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=224bp
MAAGLSAVNLSLDSLCPHTFALLTRRPAATHARVLSALNDALQQPGLAVK
LNVVVMSPINDASLPQFAALTEHQSLDVRFIEYMPFDGNQWRHASFVPYS
HMLQTLARHYGRLQHEPTHATDTSKYYRIPGFAGRVGFISSMSDHFCAGC
NRLRITADGALKTCLFGEQELSLRDLMRDGATDDQLLEAVRHALQLKNFA
LGGKRDMHALAVADNRSMVRIGG*
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spliced messenger RNA

>Ggra8633.t1 ID=Ggra8633.t1|Name=Ggra8633.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=672bp|location=Sequence derived from alignment at tig00000196_pilon:77418..78089+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atggccgccggcctgtccgccgtcaacctcagcctcgactcgttgtgccc
gcacacctttgcgctcctcacgcgtCGCCCCGCCGCCACGCACGCGCGCG
TGCTGAGCGCGCTCAACGATGCGCTGCAGCAGCCCGGCCTCGCCGTCAAG
CTCAACGTCGTCGTCATGTCGCCCATCAATGATGCGTCGCTGCCGCAGTT
CGCCGCCCTCACCGAGCACCAATCGCTGGACGTGCGCTTCATCGAGTACA
TGCCGTTCGACGGCAACCAGTGGCGCCATGCTTCCTTCGTGCCCTACTCG
CACATGCTGCAGACCCTGGCCCGCCACTACGGCCGTCTGCAACACGAGCC
CACCCATGCCACTGACACCTCCAAGTACTACCGCATACCTGGTTTCGCCG
GTCGCGTGGGATTCATTTCCAGCATGAGCGACCATTTTTGCGCCGGCTGC
AACCGGCTGCGCATCACTGCCGATGGTGCGCTCAAGACCTGCCTGTTCGG
CGAGCAAGAGCTGTCCTTGCGCGACCTCATGCGCGATGGTGCCACAGACG
ACCAGCTCCTGGAGGCCGTACGCCACGCCCTGCAGCTCAAAAACTTTGCT
TTGGGAGGCAAGCGCGATatgcatgcccttgccgtcgccgacaatcgcag
tatggtgcgcattggcggctga
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protein sequence of Ggra8633.t1

>Ggra8633.t1 ID=Ggra8633.t1|Name=Ggra8633.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=224bp
MAAGLSAVNLSLDSLCPHTFALLTRRPAATHARVLSALNDALQQPGLAVK
LNVVVMSPINDASLPQFAALTEHQSLDVRFIEYMPFDGNQWRHASFVPYS
HMLQTLARHYGRLQHEPTHATDTSKYYRIPGFAGRVGFISSMSDHFCAGC
NRLRITADGALKTCLFGEQELSLRDLMRDGATDDQLLEAVRHALQLKNFA
LGGKRDMHALAVADNRSMVRIGG*
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mRNA from alignment at tig00000196_pilon:77418..78089+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8633.t1 ID=Ggra8633.t1|Name=Ggra8633.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=672bp|location=Sequence derived from alignment at tig00000196_pilon:77418..78089+ (Gracilaria gracilis GNS1m male)
atggccgccggcctgtccgccgtcaacctcagcctcgactcgttgtgccc
gcacacctttgcgctcctcacgcgtCGCCCCGCCGCCACGCACGCGCGCG
TGCTGAGCGCGCTCAACGATGCGCTGCAGCAGCCCGGCCTCGCCGTCAAG
CTCAACGTCGTCGTCATGTCGCCCATCAATGATGCGTCGCTGCCGCAGTT
CGCCGCCCTCACCGAGCACCAATCGCTGGACGTGCGCTTCATCGAGTACA
TGCCGTTCGACGGCAACCAGTGGCGCCATGCTTCCTTCGTGCCCTACTCG
CACATGCTGCAGACCCTGGCCCGCCACTACGGCCGTCTGCAACACGAGCC
CACCCATGCCACTGACACCTCCAAGTACTACCGCATACCTGGTTTCGCCG
GTCGCGTGGGATTCATTTCCAGCATGAGCGACCATTTTTGCGCCGGCTGC
AACCGGCTGCGCATCACTGCCGATGGTGCGCTCAAGACCTGCCTGTTCGG
CGAGCAAGAGCTGTCCTTGCGCGACCTCATGCGCGATGGTGCCACAGACG
ACCAGCTCCTGGAGGCCGTACGCCACGCCCTGCAGCTCAAAAACTTTGCT
TTGGGAGGCAAGCGCGATatgcatgcccttgccgtcgccgacaatcgcag
tatggtgcgcattggcggctga
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Coding sequence (CDS) from alignment at tig00000196_pilon:77418..78089+

>Ggra8633.t1 ID=Ggra8633.t1|Name=Ggra8633.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=672bp|location=Sequence derived from alignment at tig00000196_pilon:77418..78089+ (Gracilaria gracilis GNS1m male)
atggccgccggcctgtccgccgtcaacctcagcctcgactcgttgtgccc
gcacacctttgcgctcctcacgcgtCGCCCCGCCGCCACGCACGCGCGCG
TGCTGAGCGCGCTCAACGATGCGCTGCAGCAGCCCGGCCTCGCCGTCAAG
CTCAACGTCGTCGTCATGTCGCCCATCAATGATGCGTCGCTGCCGCAGTT
CGCCGCCCTCACCGAGCACCAATCGCTGGACGTGCGCTTCATCGAGTACA
TGCCGTTCGACGGCAACCAGTGGCGCCATGCTTCCTTCGTGCCCTACTCG
CACATGCTGCAGACCCTGGCCCGCCACTACGGCCGTCTGCAACACGAGCC
CACCCATGCCACTGACACCTCCAAGTACTACCGCATACCTGGTTTCGCCG
GTCGCGTGGGATTCATTTCCAGCATGAGCGACCATTTTTGCGCCGGCTGC
AACCGGCTGCGCATCACTGCCGATGGTGCGCTCAAGACCTGCCTGTTCGG
CGAGCAAGAGCTGTCCTTGCGCGACCTCATGCGCGATGGTGCCACAGACG
ACCAGCTCCTGGAGGCCGTACGCCACGCCCTGCAGCTCAAAAACTTTGCT
TTGGGAGGCAAGCGCGATatgcatgcccttgccgtcgccgacaatcgcag
tatggtgcgcattggcggctga
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