Ggra8632.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8632.t1
Unique NameGgra8632.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length337
Homology
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BLAST of Ggra8632.t1 vs. uniprot
Match: A0A2V3INJ7 (GTPase-activating protein GYP5 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INJ7_9FLOR)

HSP 1 Score: 169 bits (429), Expect = 2.550e-43
Identity = 115/221 (52.04%), Postives = 136/221 (61.54%), Query Frame = 0 
Query:   42 TSDHTSAPP------DWVAFVSDTLCDVPADEARPLAAALQRIRRAPAHQLAQLTPVPLQRQLLALL---KSPSNEPLTVPLLMAMHALCGLASFRSALVSAGGLPLLVSFLPREPDAVDSPDRVVDAAAFQQEKRSSRGLPDAPAVAALRVLAKLLVCCPPACAHALPAGALQPLANAAAPEQPMDVRLRAAAALAAIGAWSGPRKAVQIVETPGVVTAI 253
            TS   + PP      +W A VS  L DV    + P  AALQRIRRA   +LA L P+ L R LL  L   +SP     +  +L+A+HALC L  FRS LV    LPLL+SFL   P     PDR     A  +       + D+ A AALRV+AKLLVC PPACA+A+PAGAL  LA + AP QP+D+RLRA AALAAI AWSGPR AVQIVETPGVV A+
Sbjct:   15 TSTALAEPPSSTVAAEWPAAVSAALRDVRVSSSNPPLAALQRIRRAAPQRLAPLLPLQLHRPLLRQLAKDRSPPPRDRSAAVLLALHALCSLPDFRSQLVDNAALPLLLSFLAAPP----GPDRPTSDPASAKPPAL---VADSAANAALRVVAKLLVCHPPACANAIPAGALPLLAASGAPSQPLDLRLRACAALAAIAAWSGPRNAVQIVETPGVVAAM 228
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BLAST of Ggra8632.t1 vs. uniprot
Match: R7QHQ1 (Rab-GAP TBC domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHQ1_CHOCR)

HSP 1 Score: 79.0 bits (193), Expect = 1.940e-12
Identity = 44/65 (67.69%), Postives = 50/65 (76.92%), Query Frame = 0 
Query:  189 LVCCPPACAHALPAGALQPLANAAAPEQPMDVRLRAAAALAAIGAWSGPRKAVQIVETPGVVTAI 253
            +VC P ACA A+  GAL  LA AA P+QPMD+RLRAAA LAAI AWSGPR AVQIVET  VV ++
Sbjct:    1 MVCAPAACASAISTGALVVLAAAARPQQPMDIRLRAAAGLAAIAAWSGPRCAVQIVETEHVVASM 65
The following BLAST results are available for this feature:
BLAST of Ggra8632.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3INJ72.550e-4352.04GTPase-activating protein GYP5 n=1 Tax=Gracilariop... [more]
R7QHQ11.940e-1267.69Rab-GAP TBC domain-containing protein n=1 Tax=Chon... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 50..256
e-value: 3.6E-11
score: 44.7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..336
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..23
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 94..235

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000196_piloncontigtig00000196_pilon:73871..76582 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8632.t1Ggra8632.t1Gracilaria gracilis GNS1m malemRNAtig00000196_pilon 73871..76582 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8632.t1 ID=Ggra8632.t1|Name=Ggra8632.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=337bp
MPAAAAATAAATAAATAAAAANAANTVDANTVDANAVDADATSDHTSAPP
DWVAFVSDTLCDVPADEARPLAAALQRIRRAPAHQLAQLTPVPLQRQLLA
LLKSPSNEPLTVPLLMAMHALCGLASFRSALVSAGGLPLLVSFLPREPDA
VDSPDRVVDAAAFQQEKRSSRGLPDAPAVAALRVLAKLLVCCPPACAHAL
PAGALQPLANAAAPEQPMDVRLRAAAALAAIGAWSGPRKAVQIVETPGVV
TAIGFSEPDAGVLDAKDPEPFVAMMREFRFMRDIPKSQLEASQAVASQAV
AASASKPPRSEPQQAPQQRRSALCCLPCFNRSATLD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR016024ARM-type_fold