Ggra10818.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10818.t1
Unique NameGgra10818.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length325
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000192_piloncontigtig00000192_pilon:61165..62636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog161934.XP_010673791.1
PFAMsEcm29
Max annot lvl35493|Streptophyta
KEGG koko:K11886
Evalue6.18e-13
EggNOG OGsKOG0915@1|root,KOG0915@2759|Eukaryota,37SMR@33090|Viridiplantae,3G89K@35493|Streptophyta
DescriptionProteasome-associated protein ECM29 homolog
COG categoryL
BRITEko00000,ko03051
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10818Ggra10818Gracilaria gracilis GNS1m malegenetig00000192_pilon 61165..62636 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10818.t1Ggra10818.t1Gracilaria gracilis GNS1m malepolypeptidetig00000192_pilon 61165..62636 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10818.t1.start1Ggra10818.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000192_pilon 61165..61167 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10818.t1.CDS1Ggra10818.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000192_pilon 61165..61174 +
Ggra10818.t1.CDS2Ggra10818.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000192_pilon 61281..61613 +
Ggra10818.t1.CDS3Ggra10818.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000192_pilon 61775..61980 +
Ggra10818.t1.CDS4Ggra10818.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000192_pilon 62068..62182 +
Ggra10818.t1.CDS5Ggra10818.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000192_pilon 62326..62636 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10818.t1.exon1Ggra10818.t1.exon1Gracilaria gracilis GNS1m maleexontig00000192_pilon 61165..61174 +
Ggra10818.t1.exon2Ggra10818.t1.exon2Gracilaria gracilis GNS1m maleexontig00000192_pilon 61281..61613 +
Ggra10818.t1.exon3Ggra10818.t1.exon3Gracilaria gracilis GNS1m maleexontig00000192_pilon 61775..61980 +
Ggra10818.t1.exon4Ggra10818.t1.exon4Gracilaria gracilis GNS1m maleexontig00000192_pilon 62068..62182 +
Ggra10818.t1.exon5Ggra10818.t1.exon5Gracilaria gracilis GNS1m maleexontig00000192_pilon 62326..62636 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10818.t1.intron1Ggra10818.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000192_pilon 61175..61280 +
Ggra10818.t1.intron2Ggra10818.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000192_pilon 61614..61774 +
Ggra10818.t1.intron3Ggra10818.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000192_pilon 61981..62067 +
Ggra10818.t1.intron4Ggra10818.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000192_pilon 62183..62325 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10818.t1.stop1Ggra10818.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000192_pilon 62634..62636 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10818.t1 ID=Ggra10818.t1|Name=Ggra10818.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=325bp
MQPALQGVWATIGAASLTERLRSVVSDFVNLAGLVTLTTVLAFLLPTALG
PPTVRVVYEFELLLLSVFARFDPARRQQRRVRMYAEVFNREEASAWCAGF
QNRLGLLLAAEQRHDLVGNLVWSLTSGKRAAAKFPSDQGVLLEFKGVDVQ
SNSAGARSATYRALCSLAQDMGQQELVYKLLDLLRTHLRNLLLWLYVYCH
DSMESARIAMGSIISAVVKAFEEVKDSLKDFWYYTLSAMDDIKESVQKSA
QGSGKVLSELSIYLCNPGYVDEENSAPAVDVVLSVLMLSITHSADEVRAL
VSNTLSEIIRHVRRELRSCVPDFI*
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spliced messenger RNA

>Ggra10818.t1 ID=Ggra10818.t1|Name=Ggra10818.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=975bp|location=Sequence derived from alignment at tig00000192_pilon:61165..62636+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCCGGCACTTCAGGGCGTATGGGCCACAATTGGCGCAGCGAGCTT
GACTGAGCGTCTGCGGTCAGTGGTGAGCGACTTCGTCAACCTGGCGGGGC
TGGTGACGCTGACGACCGTGTTAGCGTTCCTGCTTCCCACCGCGCTTGGC
CCACCGACGGTACGGGTCGTCTACGAGTTTGAACTTCTCCTTCTCAGCGT
GTTTGCCCGCTTCGATCCGGCCCGAAGGCAGCAGCGGCGAGTGCGCATGT
ACGCAGAGGTTTTTAATCGCGAAGAGGCATCTGCTTGGTGCGCCGGATTC
CAGAACCGGCTTGGGCTTCTCCTTGCGGCGGAACAGCGGCATGATCTTGT
CGGAAACCTGGTTTGGTCTTTGACCTCCGGCAAGCGAGCCGCTGCGAAGT
TTCCCAGTGATCAAGGTGTACTGTTAGAATTCAAGGGTGTGGATGTTCAA
TCCAACTCGGCAGGAGCACGCTCAGCTACCTATAGAGCGCTTTGTTCTCT
TGCTCAGGATATGGGTCAGCAGGAACTTGTGTACAAATTATTGGATCTTC
TCAGAACTCACCTGAGAAATCTACTGCTCTGGTTGTACGTGTATTGCCAT
GATTCGATGGAAAGCGCTCGTATTGCGATGGGGTCAATTATATCAGCTGT
TGTGAAGGCATTTGAGGAAGTGAAGGATTCCCTGAAGGATTTCTGGTACT
ATACACTGAGTGCGATGGATGATATCAAGGAAAGTGTGCAGAAGAGTGCT
CAAGGGAGTGGAAAGGTACTTTCGGAACTTTCCATCTATCTATGTAATCC
AGGGTATGTGGATGAGGAGAATTCGGCCCCGGCCGTTGACGTTGTACTGT
CCGTTCTTATGTTATCCATTACGCACAGCGCCGACGAAGTGAGAGCACTC
GTTTCAAATACCTTGTCCGAGATCATACGGCACGTTCGAAGGGAATTGCG
GTCTTGTGTGCCGGATTTCATCTAA
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protein sequence of Ggra10818.t1

>Ggra10818.t1 ID=Ggra10818.t1|Name=Ggra10818.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=325bp
MQPALQGVWATIGAASLTERLRSVVSDFVNLAGLVTLTTVLAFLLPTALG
PPTVRVVYEFELLLLSVFARFDPARRQQRRVRMYAEVFNREEASAWCAGF
QNRLGLLLAAEQRHDLVGNLVWSLTSGKRAAAKFPSDQGVLLEFKGVDVQ
SNSAGARSATYRALCSLAQDMGQQELVYKLLDLLRTHLRNLLLWLYVYCH
DSMESARIAMGSIISAVVKAFEEVKDSLKDFWYYTLSAMDDIKESVQKSA
QGSGKVLSELSIYLCNPGYVDEENSAPAVDVVLSVLMLSITHSADEVRAL
VSNTLSEIIRHVRRELRSCVPDFI*
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mRNA from alignment at tig00000192_pilon:61165..62636+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10818.t1 ID=Ggra10818.t1|Name=Ggra10818.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1472bp|location=Sequence derived from alignment at tig00000192_pilon:61165..62636+ (Gracilaria gracilis GNS1m male)
ATGCAGCCGGGTACGTTGCTGCGGTTGTTGCGGCTGCTTCTGCCCTTTCA
GCGCTCTTCCATGGACAGGCATGTTCCGTCGCACCTTTCTCTGCGTAGCG
TTGTCCATCTTGGCAGCACTTCAGGGCGTATGGGCCACAATTGGCGCAGC
GAGCTTGACTGAGCGTCTGCGGTCAGTGGTGAGCGACTTCGTCAACCTGG
CGGGGCTGGTGACGCTGACGACCGTGTTAGCGTTCCTGCTTCCCACCGCG
CTTGGCCCACCGACGGTACGGGTCGTCTACGAGTTTGAACTTCTCCTTCT
CAGCGTGTTTGCCCGCTTCGATCCGGCCCGAAGGCAGCAGCGGCGAGTGC
GCATGTACGCAGAGGTTTTTAATCGCGAAGAGGCATCTGCTTGGTGCGCC
GGATTCCAGAACCGGCTTGGGCTTCTCCTTGCGGCGGAACAGCGGCATGG
TAGGAACCCGTCAACAAGCAGGTGTTGCTACTGGGGTTTCTTCCAGATAT
TCAAAGGGCTTTTATTTTGATATTGTCAGCTCGATATGACTTCACTCAGC
AGATGGAATCTTGTAGAATTTCTTTGGTTTAATACATATGTCCCCCACAA
AATCAACAAGATCTTGTCGGAAACCTGGTTTGGTCTTTGACCTCCGGCAA
GCGAGCCGCTGCGAAGTTTCCCAGTGATCAAGGTGTACTGTTAGAATTCA
AGGGTGTGGATGTTCAATCCAACTCGGCAGGAGCACGCTCAGCTACCTAT
AGAGCGCTTTGTTCTCTTGCTCAGGATATGGGTCAGCAGGAACTTGTGTA
CAAATTATTGGATCTTGTAGGTCACGCTGCGTTATAGAACAGTCGCAAGG
GCGTGGCATTGGCTGAAAATGCGCCCTTGAACACTGATATTGCCACCAAA
CAGCTCAGAACTCACCTGAGAAATCTACTGCTCTGGTTGTACGTGTATTG
CCATGATTCGATGGAAAGCGCTCGTATTGCGATGGGGTCAATTATATCAG
CTGTTGTGAAGGCATTTGGTACGGGTCAAAAGCAGAAGCTATAAAGACGA
ACTTGCCGGCTGTAACCGATCACTGCATTAAATCAATCTTCTCCCGGCAA
TGGCGTTCTCTTGAGGCTGTTTTTGGGGCTCTACGGGACGTTCTTGTCTC
TCGTACATGAGAGGAAGTGAAGGATTCCCTGAAGGATTTCTGGTACTATA
CACTGAGTGCGATGGATGATATCAAGGAAAGTGTGCAGAAGAGTGCTCAA
GGGAGTGGAAAGGTACTTTCGGAACTTTCCATCTATCTATGTAATCCAGG
GTATGTGGATGAGGAGAATTCGGCCCCGGCCGTTGACGTTGTACTGTCCG
TTCTTATGTTATCCATTACGCACAGCGCCGACGAAGTGAGAGCACTCGTT
TCAAATACCTTGTCCGAGATCATACGGCACGTTCGAAGGGAATTGCGGTC
TTGTGTGCCGGATTTCATCTAA
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Coding sequence (CDS) from alignment at tig00000192_pilon:61165..62636+

>Ggra10818.t1 ID=Ggra10818.t1|Name=Ggra10818.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=975bp|location=Sequence derived from alignment at tig00000192_pilon:61165..62636+ (Gracilaria gracilis GNS1m male)
ATGCAGCCGGCACTTCAGGGCGTATGGGCCACAATTGGCGCAGCGAGCTT
GACTGAGCGTCTGCGGTCAGTGGTGAGCGACTTCGTCAACCTGGCGGGGC
TGGTGACGCTGACGACCGTGTTAGCGTTCCTGCTTCCCACCGCGCTTGGC
CCACCGACGGTACGGGTCGTCTACGAGTTTGAACTTCTCCTTCTCAGCGT
GTTTGCCCGCTTCGATCCGGCCCGAAGGCAGCAGCGGCGAGTGCGCATGT
ACGCAGAGGTTTTTAATCGCGAAGAGGCATCTGCTTGGTGCGCCGGATTC
CAGAACCGGCTTGGGCTTCTCCTTGCGGCGGAACAGCGGCATGATCTTGT
CGGAAACCTGGTTTGGTCTTTGACCTCCGGCAAGCGAGCCGCTGCGAAGT
TTCCCAGTGATCAAGGTGTACTGTTAGAATTCAAGGGTGTGGATGTTCAA
TCCAACTCGGCAGGAGCACGCTCAGCTACCTATAGAGCGCTTTGTTCTCT
TGCTCAGGATATGGGTCAGCAGGAACTTGTGTACAAATTATTGGATCTTC
TCAGAACTCACCTGAGAAATCTACTGCTCTGGTTGTACGTGTATTGCCAT
GATTCGATGGAAAGCGCTCGTATTGCGATGGGGTCAATTATATCAGCTGT
TGTGAAGGCATTTGAGGAAGTGAAGGATTCCCTGAAGGATTTCTGGTACT
ATACACTGAGTGCGATGGATGATATCAAGGAAAGTGTGCAGAAGAGTGCT
CAAGGGAGTGGAAAGGTACTTTCGGAACTTTCCATCTATCTATGTAATCC
AGGGTATGTGGATGAGGAGAATTCGGCCCCGGCCGTTGACGTTGTACTGT
CCGTTCTTATGTTATCCATTACGCACAGCGCCGACGAAGTGAGAGCACTC
GTTTCAAATACCTTGTCCGAGATCATACGGCACGTTCGAAGGGAATTGCG
GTCTTGTGTGCCGGATTTCATCTAA
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