Ggra10842.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10842.t1
Unique NameGgra10842.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length449
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000192_piloncontigtig00000192_pilon:231878..233351 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704178.1
Preferred nameEPC1
PFAMsEPL1,E_Pc_C
Max annot lvl2759|Eukaryota
KEGG koko:K11322
GOsGO:0000122,GO:0000123,GO:0000228,GO:0000785,GO:0000790,GO:0000792,GO:0000902,GO:0000904,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005694,GO:0005700,GO:0005720,GO:0005725,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006338,GO:0006351,GO:0006355,GO:0006357,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006928,GO:0006935,GO:0006950,GO:0006974,GO:0006996,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009605,GO:0009653,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010467,GO:0010468,GO:0010506,GO:0010508,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010948,GO:0012505,GO:0016020,GO:0016043,GO:0016070,GO:0016239,GO:0016241,GO:0016358,GO:0016569,GO:0016570,GO:0016573,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0022008,GO:0030030,GO:0030154,GO:0030182,GO:0031090,GO:0031175,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031331,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032777,GO:0032989,GO:0032990,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0034728,GO:0035267,GO:0036211,GO:0040011,GO:0040029,GO:0042221,GO:0042330,GO:0043044,GO:0043170,GO:0043189,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043486,GO:0043543,GO:0043933,GO:0043967,GO:0043968,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045595,GO:0045597,GO:0045786,GO:0045814,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048813,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051147,GO:0051149,GO:0051153,GO:0051155,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0070013,GO:0070316,GO:0070317,GO:0070983,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0097485,GO:0097659,GO:0120036,GO:0120039,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902493,GO:1902494,GO:1902562,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990234,GO:2000112,GO:2000113,GO:2001141
Evalue1.68e-60
EggNOG OGsKOG2261@1|root,KOG2261@2759|Eukaryota
Descriptioninternal peptidyl-lysine acetylation
COG categoryK
BRITEko00000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10842Ggra10842Gracilaria gracilis GNS1m malegenetig00000192_pilon 231878..233351 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10842.t1Ggra10842.t1Gracilaria gracilis GNS1m malepolypeptidetig00000192_pilon 231878..233351 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10842.t1.stop1Ggra10842.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000192_pilon 231878..231880 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10842.t1.CDS1Ggra10842.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000192_pilon 231878..231898 -
Ggra10842.t1.CDS2Ggra10842.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000192_pilon 232026..233351 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10842.t1.exon1Ggra10842.t1.exon1Gracilaria gracilis GNS1m maleexontig00000192_pilon 231878..231898 -
Ggra10842.t1.exon2Ggra10842.t1.exon2Gracilaria gracilis GNS1m maleexontig00000192_pilon 232026..233351 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10842.t1.intron1Ggra10842.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000192_pilon 231899..232025 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10842.t1.start1Ggra10842.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000192_pilon 233349..233351 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10842.t1 ID=Ggra10842.t1|Name=Ggra10842.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=449bp
LAKNASTSIFVEKIPPSRPPRRDSGAAQAASRPSFRPRPIDLNKPLPIIK
TSKDLRHEDDIVVNRALPAIASGVDPSEEEERHLQQALLASVFGANAKAA
TADIPVPIVNRVEPPVIHASFTRPEQYILFDRDDLDLIDDIVDYDADFVD
EQFSRDNNVELDLLERAMDSLEKAQARSESPNLLSFSAIKSLLASNDIVT
KPLYHHWLRRRQSRTISFLRIFQPPPDPKNHDPAVAFRPRERDAASGIAR
RMNTYDNFRKALVLRDELQQLRQILQRVVHRENKKAQVLALKMLAQRLRA
TADGGVRMDAVNRAAFSCDTEPVVTYGSSASPASIVVVPVRGLNLPDSIN
VVSRKMGGDKMSKKNRRKAKMPEKRGQKEGSPSPSADIHALASSPSNVDK
YGYDYHGNYCLKHMRYFAGGFANYGVSPYDHRVFAAATERNTTLPAIF*
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spliced messenger RNA

>Ggra10842.t1 ID=Ggra10842.t1|Name=Ggra10842.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1347bp|location=Sequence derived from alignment at tig00000192_pilon:231878..233351- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
TTGGCCAAAAACGCGAGCACGTCCATTTTTGTCGAAAAAATTCCGCCCTC
ACGCCCGCCGCGCCGCGACAGCGGCGCGGCACAAGCCGCGTCGCGCCCGT
CGTTTCGGCCGCGCCCCATCGACCTCAACAAGCCGCTGCCTATCATCAAA
ACCAGCAAGGACCTCCGCCATGAAGATGACATCGTCGTCAACCGTGCCTT
GCCGGCCATTGCGTCCGGCGTCGACCCGTCCGAGGAGGAGGAGCGTCACT
TGCAGCAGGCGCTTCTGGCCTCTGTGTTTGGCGCCAATGCCAAGGCTGCC
ACCGCCGATATCCCCGTGCCCATAGTCAACCGCGTTGAGCCGCCCGTTAT
CCACGCGTCGTTTACACGCCCCGAGCAGTACATCCTTTTCGATAGGGATG
ATCTCGATCTCATTGACGACATCGTCGACTATGACGCCGACTTTGTCGAC
GAGCAATTCTCGCGCGATAACAATGTTGAGCTCGACCTGCTCGAGCGTGC
CATGGACTCATTGGAGAAAGCGCAAGCACGCTCTGAGTCTCCCAACCTGC
TGTCTTTCTCGGCCATCAAATCGCTGCTAGCTTCCAACGACATCGTCACC
AAACCGCTCTACCACCACTGGCTTCGCCGCCGCCAATCACGTACCATATC
CTTTCTGCGCATCTTCCAACCGCCACCCGACCCGAAGAACCATGACCCCG
CCGTCGCCTTCCGTCCGCGCGAACGCGATGCCGCCTCCGGTATTGCGCGT
CGTATGAACACGTACGACAACTTTCGCAAGGCACTTGTTCTGCGCGATGA
GCTGCAACAACTGCGTCAAATTCTTCAGCGCGTTGTGCATCGAGAGAACA
AGAAGGCTCAGGTGCTTGCGCTTAAGATGCTCGCGCAGCGACTTCGCGCT
ACCGCCGATGGTGGCGTGCGCATGGATGCCGTCAATCGCGCTGCCTTCTC
CTGCGATACTGAACCCGTAGTAACATACGGATCCAGCGCCTCGCCAGCCT
CAATTGTCGTAGTGCCGGTCAGGGGGCTGAATTTGCCCGACTCCATAAAC
GTGGTATCCAGGAAGATGGGCGGCGACAAGATGTCCAAGAAGAATCGCCG
CAAAGCCAAGATGCCGGAGAAGAGGGGTCAAAAGGAAGGCTCTCCGTCGC
CTTCTGCCGATATCCACGCGCTTGCAAGCTCCCCTTCAAACGTTGACAAG
TATGGATATGATTACCACGGAAACTATTGCCTCAAACACATGCGATATTT
CGCGGGCGGTTTCGCCAACTACGGTGTGTCACCGTACGACCATCGCGTGT
TTGCGGCTGCGACCGAGCGAAATACGACATTGCCCGCGATATTTTAA
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protein sequence of Ggra10842.t1

>Ggra10842.t1 ID=Ggra10842.t1|Name=Ggra10842.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=449bp
LAKNASTSIFVEKIPPSRPPRRDSGAAQAASRPSFRPRPIDLNKPLPIIK
TSKDLRHEDDIVVNRALPAIASGVDPSEEEERHLQQALLASVFGANAKAA
TADIPVPIVNRVEPPVIHASFTRPEQYILFDRDDLDLIDDIVDYDADFVD
EQFSRDNNVELDLLERAMDSLEKAQARSESPNLLSFSAIKSLLASNDIVT
KPLYHHWLRRRQSRTISFLRIFQPPPDPKNHDPAVAFRPRERDAASGIAR
RMNTYDNFRKALVLRDELQQLRQILQRVVHRENKKAQVLALKMLAQRLRA
TADGGVRMDAVNRAAFSCDTEPVVTYGSSASPASIVVVPVRGLNLPDSIN
VVSRKMGGDKMSKKNRRKAKMPEKRGQKEGSPSPSADIHALASSPSNVDK
YGYDYHGNYCLKHMRYFAGGFANYGVSPYDHRVFAAATERNTTLPAIF*
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mRNA from alignment at tig00000192_pilon:231878..233351-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10842.t1 ID=Ggra10842.t1|Name=Ggra10842.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1474bp|location=Sequence derived from alignment at tig00000192_pilon:231878..233351- (Gracilaria gracilis GNS1m male)
TTGGCCAAAAACGCGAGCACGTCCATTTTTGTCGAAAAAATTCCGCCCTC
ACGCCCGCCGCGCCGCGACAGCGGCGCGGCACAAGCCGCGTCGCGCCCGT
CGTTTCGGCCGCGCCCCATCGACCTCAACAAGCCGCTGCCTATCATCAAA
ACCAGCAAGGACCTCCGCCATGAAGATGACATCGTCGTCAACCGTGCCTT
GCCGGCCATTGCGTCCGGCGTCGACCCGTCCGAGGAGGAGGAGCGTCACT
TGCAGCAGGCGCTTCTGGCCTCTGTGTTTGGCGCCAATGCCAAGGCTGCC
ACCGCCGATATCCCCGTGCCCATAGTCAACCGCGTTGAGCCGCCCGTTAT
CCACGCGTCGTTTACACGCCCCGAGCAGTACATCCTTTTCGATAGGGATG
ATCTCGATCTCATTGACGACATCGTCGACTATGACGCCGACTTTGTCGAC
GAGCAATTCTCGCGCGATAACAATGTTGAGCTCGACCTGCTCGAGCGTGC
CATGGACTCATTGGAGAAAGCGCAAGCACGCTCTGAGTCTCCCAACCTGC
TGTCTTTCTCGGCCATCAAATCGCTGCTAGCTTCCAACGACATCGTCACC
AAACCGCTCTACCACCACTGGCTTCGCCGCCGCCAATCACGTACCATATC
CTTTCTGCGCATCTTCCAACCGCCACCCGACCCGAAGAACCATGACCCCG
CCGTCGCCTTCCGTCCGCGCGAACGCGATGCCGCCTCCGGTATTGCGCGT
CGTATGAACACGTACGACAACTTTCGCAAGGCACTTGTTCTGCGCGATGA
GCTGCAACAACTGCGTCAAATTCTTCAGCGCGTTGTGCATCGAGAGAACA
AGAAGGCTCAGGTGCTTGCGCTTAAGATGCTCGCGCAGCGACTTCGCGCT
ACCGCCGATGGTGGCGTGCGCATGGATGCCGTCAATCGCGCTGCCTTCTC
CTGCGATACTGAACCCGTAGTAACATACGGATCCAGCGCCTCGCCAGCCT
CAATTGTCGTAGTGCCGGTCAGGGGGCTGAATTTGCCCGACTCCATAAAC
GTGGTATCCAGGAAGATGGGCGGCGACAAGATGTCCAAGAAGAATCGCCG
CAAAGCCAAGATGCCGGAGAAGAGGGGTCAAAAGGAAGGCTCTCCGTCGC
CTTCTGCCGATATCCACGCGCTTGCAAGCTCCCCTTCAAACGTTGACAAG
TATGGATATGATTACCACGGAAACTATTGCCTCAAACACATGCGATATTT
CGCGGGCGGTTTCGCCAACTACGGTGTGTCACCGTACGACCATCGCGTGT
TTGCGGCTGCGACCGAGCGAAATACGGTGAGAGCGTCAACCCGGGAACCG
CATCCAGTAACCATCCCCAGTGCGAGTGTAAAGTTCGGTAGATTTGGTGG
CAGATTTGGTGCAGGCGCCAAGACTGGTCCTCGTCGATTCGTCACAACTG
AAGACATTGCCCGCGATATTTTAA
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Coding sequence (CDS) from alignment at tig00000192_pilon:231878..233351-

>Ggra10842.t1 ID=Ggra10842.t1|Name=Ggra10842.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1347bp|location=Sequence derived from alignment at tig00000192_pilon:231878..233351- (Gracilaria gracilis GNS1m male)
TTGGCCAAAAACGCGAGCACGTCCATTTTTGTCGAAAAAATTCCGCCCTC
ACGCCCGCCGCGCCGCGACAGCGGCGCGGCACAAGCCGCGTCGCGCCCGT
CGTTTCGGCCGCGCCCCATCGACCTCAACAAGCCGCTGCCTATCATCAAA
ACCAGCAAGGACCTCCGCCATGAAGATGACATCGTCGTCAACCGTGCCTT
GCCGGCCATTGCGTCCGGCGTCGACCCGTCCGAGGAGGAGGAGCGTCACT
TGCAGCAGGCGCTTCTGGCCTCTGTGTTTGGCGCCAATGCCAAGGCTGCC
ACCGCCGATATCCCCGTGCCCATAGTCAACCGCGTTGAGCCGCCCGTTAT
CCACGCGTCGTTTACACGCCCCGAGCAGTACATCCTTTTCGATAGGGATG
ATCTCGATCTCATTGACGACATCGTCGACTATGACGCCGACTTTGTCGAC
GAGCAATTCTCGCGCGATAACAATGTTGAGCTCGACCTGCTCGAGCGTGC
CATGGACTCATTGGAGAAAGCGCAAGCACGCTCTGAGTCTCCCAACCTGC
TGTCTTTCTCGGCCATCAAATCGCTGCTAGCTTCCAACGACATCGTCACC
AAACCGCTCTACCACCACTGGCTTCGCCGCCGCCAATCACGTACCATATC
CTTTCTGCGCATCTTCCAACCGCCACCCGACCCGAAGAACCATGACCCCG
CCGTCGCCTTCCGTCCGCGCGAACGCGATGCCGCCTCCGGTATTGCGCGT
CGTATGAACACGTACGACAACTTTCGCAAGGCACTTGTTCTGCGCGATGA
GCTGCAACAACTGCGTCAAATTCTTCAGCGCGTTGTGCATCGAGAGAACA
AGAAGGCTCAGGTGCTTGCGCTTAAGATGCTCGCGCAGCGACTTCGCGCT
ACCGCCGATGGTGGCGTGCGCATGGATGCCGTCAATCGCGCTGCCTTCTC
CTGCGATACTGAACCCGTAGTAACATACGGATCCAGCGCCTCGCCAGCCT
CAATTGTCGTAGTGCCGGTCAGGGGGCTGAATTTGCCCGACTCCATAAAC
GTGGTATCCAGGAAGATGGGCGGCGACAAGATGTCCAAGAAGAATCGCCG
CAAAGCCAAGATGCCGGAGAAGAGGGGTCAAAAGGAAGGCTCTCCGTCGC
CTTCTGCCGATATCCACGCGCTTGCAAGCTCCCCTTCAAACGTTGACAAG
TATGGATATGATTACCACGGAAACTATTGCCTCAAACACATGCGATATTT
CGCGGGCGGTTTCGCCAACTACGGTGTGTCACCGTACGACCATCGCGTGT
TTGCGGCTGCGACCGAGCGAAATACGACATTGCCCGCGATATTTTAA
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