Ggra9734.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9734.t1
Unique NameGgra9734.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length142
Homology
BLAST of Ggra9734.t1 vs. uniprot
Match: A0A2V3IDL5 (Cleavage and polyadenylation specificity factor subunit 4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IDL5_9FLOR)

HSP 1 Score: 266 bits (679), Expect = 1.980e-88
Identity = 137/141 (97.16%), Postives = 138/141 (97.87%), Query Frame = 0
Query:    1 MCDYLHSVDYLRMPECFFFSKYGECSNNECPYRHVDPEKKRNECPYYARGFCRHGPKCRHRHVKKVAXXXXXXXXXXXXXXXVFGHARFEIPRTADDEDMFSNGIDRFGFGRSRGPAPRLITHENGMLATAAGTMPHGGRR 141
            MCDYLHSVDYLRMPECFFFSKYGECSNNECPYRHVDPEKK+NE PYYARGFCRHGPKCRHRHVKKV XXXXXXXXXXXXXXXVFGHARFEIPRTADDEDMFSNGIDRFGFGRSRGPAPRLITHENGMLATAAGTMPHG RR
Sbjct:   96 MCDYLHSVDYLRMPECFFFSKYGECSNNECPYRHVDPEKKKNEXPYYARGFCRHGPKCRHRHVKKVXXXXXXXXXXXXXXXXVFGHARFEIPRTADDEDMFSNGIDRFGFGRSRGPAPRLITHENGMLATAAGTMPHGNRR 236          
BLAST of Ggra9734.t1 vs. uniprot
Match: R7QPX5 (Putative PCSF-30 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QPX5_CHOCR)

HSP 1 Score: 232 bits (591), Expect = 5.630e-75
Identity = 122/132 (92.42%), Postives = 123/132 (93.18%), Query Frame = 0
Query:    1 MCDYLHSVDYLRMPECFFFSKYGECSNNECPYRHVDPEKKRNECPYYARGFCRHGPKCRHRHVKKVAXXXXXXXXXXXXXXXVFGHARFEIPRTADDEDMFSNGIDRFGFGRSRGPAPRLITHENGMLATAA 132
            +CDYLHSVDY RMPECFFFSKYGECSN ECPYRHVDPEKKRNECPYY RGFCRHGPKCRHRHVKKVAXXXXXXXXXXXXXXX FGHARFEI R  DDED FSNGIDRFGFGRSRGPAPRLIT ENGMLATAA
Sbjct:   86 LCDYLHSVDYGRMPECFFFSKYGECSNAECPYRHVDPEKKRNECPYYGRGFCRHGPKCRHRHVKKVAXXXXXXXXXXXXXXXXFGHARFEIARNVDDEDTFSNGIDRFGFGRSRGPAPRLITLENGMLATAA 217          
BLAST of Ggra9734.t1 vs. uniprot
Match: A0A1X6P8C9 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P8C9_PORUM)

HSP 1 Score: 185 bits (470), Expect = 5.870e-57
Identity = 95/131 (72.52%), Postives = 107/131 (81.68%), Query Frame = 0
Query:    2 CDYLHSVDYLRMPECFFFSKYGECSNNECPYRHVDPEKKRNECPYYARGFCRHGPKCRHRHVKKVAXXXXXXXXXXXXXXXVFGHARFEIPRTADDEDMFSNGIDRFGFGRSRGPAPRLITHENGMLATAA 132
            C+YLH  D  +MPEC+FFSK+GECSN EC YRH+DPEKKRNECPY+ARGFC+HGPKCRHRHVKKVA   XXXXXXXXXXXXVFGHARFE PR   D+D    GIDRFGFGR +GPAP++I  +N   A AA
Sbjct:   84 CEYLHEFDLSKMPECYFFSKFGECSNTECMYRHIDPEKKRNECPYFARGFCKHGPKCRHRHVKKVACANXXXXXXXXXXXXVFGHARFETPRADGDDDP--GGIDRFGFGRPKGPAPKIIFRDNVATAAAA 212          
BLAST of Ggra9734.t1 vs. uniprot
Match: A0A5J4YR05 (Cleavage and polyadenylation specificity factor subunit 4 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YR05_PORPP)

HSP 1 Score: 164 bits (415), Expect = 6.520e-48
Identity = 98/147 (66.67%), Postives = 105/147 (71.43%), Query Frame = 0
Query:    2 CDYLHSVDYLRMPECFFFSKYGECSNNECPYRHVDPEKKRNECPYYARGFCRHGPKCRHRHVKKVAXXXXXXXXXXXXXXXVFGHARFEIPRTADDEDMFSNGIDRFGFGRSRG-------PAPRLITHENGMLATAAGTMPHGGRR 141
            C+YLH  D  RMPECFFFSK+GECSN EC YRHVD +KKRNECPYYARGFC+HGPKCRHRHVK+VAXXXXXXXXXXXXXXX  GHARFEIPRT + +D    G DRFGF R  G       P P       GM A   G M  GG R
Sbjct:  107 CEYLHEFDMSRMPECFFFSKFGECSNAECQYRHVDLDKKRNECPYYARGFCKHGPKCRHRHVKRVAXXXXXXXXXXXXXXXXXGHARFEIPRTDEVDD---GGADRFGFSRGAGSGAQPSGPPPGGYDGHAGMNAGGYGGMDGGGNR 250          
BLAST of Ggra9734.t1 vs. uniprot
Match: A0A7S1ETJ6 (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ETJ6_9RHOD)

HSP 1 Score: 153 bits (386), Expect = 6.540e-44
Identity = 84/113 (74.34%), Postives = 94/113 (83.19%), Query Frame = 0
Query:    2 CDYLHSVDYLRMPECFFFSKYGECSNNECPYRHVDPEKKRNECPYYARGFCRHGPKCRHRHVKKVAXXXXXXXXXXXXXXXVFGHARFEIPRTADDEDMFSNGIDRFGFGRSR 114
            C+YLH  D  RMPEC+FFSK+GECSN EC YRHVD +KKRNECPYYARGFC+HGPKCRHRHVK+VAXXXXXXXXXXXXXXX  GHARFEI R  D++      +DRFGFGR +
Sbjct:  109 CEYLHEYDMSRMPECYFFSKFGECSNAECMYRHVDLDKKRNECPYYARGFCKHGPKCRHRHVKRVAXXXXXXXXXXXXXXXXXGHARFEITRENDED----TAVDRFGFGRPK 217          
BLAST of Ggra9734.t1 vs. uniprot
Match: A0A2H2I163 (Cleavage and polyadenylation specificity factor subunit 4 n=1 Tax=Caenorhabditis japonica TaxID=281687 RepID=A0A2H2I163_CAEJA)

HSP 1 Score: 117 bits (294), Expect = 2.170e-29
Identity = 74/140 (52.86%), Postives = 86/140 (61.43%), Query Frame = 0
Query:    2 CDYLHSVDYLRMPECFFFSKYGECSNNECPYRHVDPEKKRNECPYYARGFCRHGPKCRHRHVKKVAXXXXXXXXXXXXXXXVFGHARFEIPRTADDEDMFSNGIDRFGFGRSRGPAPRLIT----HENGMLATAAGTMPH 137
            C++LH  D  +MPECFFFSKY  CSN ECP+RH+DPE K  +CP+Y RGFCRHGP C+HRH ++  XXXXXXXXXXXXXXX   H  F IP        F N        + R P  + IT    HE G  AT   T PH
Sbjct:  106 CEFLHEYDLTKMPECFFFSKYSACSNRECPFRHIDPETKLKDCPWYDRGFCRHGPYCKHRHRRRAVXXXXXXXXXXXXXXXXXXHPSFNIP-------SFENTAPVHTHYQQRAPYSQAITCHNCHERGHKAT---TCPH 235          
BLAST of Ggra9734.t1 vs. uniprot
Match: A0A6B2LG43 (Uncharacterized protein (Fragment) n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LG43_9EUKA)

HSP 1 Score: 115 bits (287), Expect = 3.770e-29
Identity = 66/132 (50.00%), Postives = 84/132 (63.64%), Query Frame = 0
Query:    5 LHSVDYLRMPECFFFSKYGECSNNECPYRHVDPEKKRNECPYYARGFCRHGPKCRHRHVKKVAXXXXXXXXXXXXXXXVFGHARFEIPRTADDEDMFSNGIDRFGFGRSRGPAPRLITHENGMLATAAGTMP 136
            LH  +  +MPEC+FFSK+GECSN EC Y H++PE K  ECP+YARGFC+HG KCRHRHVKKVA     XXXXXXXXXX   H +FE+P   + E   S+G+ +            ++ H+ G+L   A   P
Sbjct:   69 LHEYNLAKMPECYFFSKFGECSNPECMYLHINPEDKIRECPWYARGFCKHGDKCRHRHVKKVACDNFMXXXXXXXXXXXXXHPKFELPTDGEAE---SSGVRK----------TPVVCHKCGVLGHKASHCP 187          
BLAST of Ggra9734.t1 vs. uniprot
Match: A0A507FUE9 (Uncharacterized protein n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FUE9_9FUNG)

HSP 1 Score: 113 bits (283), Expect = 4.180e-29
Identity = 55/99 (55.56%), Postives = 69/99 (69.70%), Query Frame = 0
Query:   13 MPECFFFSKYGECSNNECPYRHVDPEKKRNECPYYARGFCRHGPKCRHRHVKKVAXXXXXXXXXXXXXXXVFGHARFEIPRTADDEDMFSNGIDRFGFG 111
            MPEC+F+SKYGECSN EC Y H+DPE K  ECP+YARGFC+HGPKCR++HV++       XXXXXXX    FGH +FE+P   +D  +     +  GFG
Sbjct:    1 MPECWFYSKYGECSNPECQYLHLDPESKIKECPWYARGFCKHGPKCRNKHVRQAVCQNYVXXXXXXXRECPFGHPKFELPNLNEDGTVGGGASNMAGFG 99          
BLAST of Ggra9734.t1 vs. uniprot
Match: hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644B54C (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644B54C)

HSP 1 Score: 115 bits (287), Expect = 2.900e-28
Identity = 58/97 (59.79%), Postives = 76/97 (78.35%), Query Frame = 0
Query:    1 MCDYLHSVDYLRMPECFFFSKYGECSNNECPYRHVDPEKKRNECPYYARGFCRHGPKCRHRHVKKVAXXXXXXXXXXXXXXXVFGHARFEIPRTADD 97
            +C++LH  D  +MPEC+FFSK+GECSN EC Y H++PE+K  ECP+YARGFC+HGPKCRH+H+KK+    XXXXXXXXXXXX     +FE+P+   +
Sbjct:   37 LCEFLHEYDLAKMPECYFFSKFGECSNQECMYLHLNPEEKVVECPWYARGFCKHGPKCRHKHMKKLLCENXXXXXXXXXXXXXXXXPKFELPKEESE 133          
BLAST of Ggra9734.t1 vs. uniprot
Match: A0A0L0RXM6 (Uncharacterized protein n=2 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0RXM6_ALLM3)

HSP 1 Score: 111 bits (278), Expect = 9.390e-28
Identity = 64/123 (52.03%), Postives = 82/123 (66.67%), Query Frame = 0
Query:    4 YLHSVDYLRMPECFFFSKYGECSNNECPYRHVDPEKKRNECPYYARGFCRHGPKCRHRHVKKVAXXXXXXXXXXXXXXXVFGHARFEIPRTADDEDMFSNGIDRFGFGRSRGPAPRLITHENG 126
            +LH  +  +MPEC+FF+KYGECSN +C Y H+DP  KR ECP++ARGFC+HGP C+HRHVKKV   XXXXXXXXXXXXX     +FE+  T DD++     +   G   +    PR   + NG
Sbjct:   83 FLHEYNMNKMPECWFFAKYGECSNPDCVYLHIDPSVKRRECPWFARGFCKHGPHCKHRHVKKVPCLXXXXXXXXXXXXXXXXXPKFEVS-TVDDDEFADAALPPGGSAANPTGGPRGFGNHNG 204          
The following BLAST results are available for this feature:
BLAST of Ggra9734.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IDL51.980e-8897.16Cleavage and polyadenylation specificity factor su... [more]
R7QPX55.630e-7592.42Putative PCSF-30 n=1 Tax=Chondrus crispus TaxID=27... [more]
A0A1X6P8C95.870e-5772.52Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A5J4YR056.520e-4866.67Cleavage and polyadenylation specificity factor su... [more]
A0A7S1ETJ66.540e-4474.34Hypothetical protein (Fragment) n=1 Tax=Timspurcki... [more]
A0A2H2I1632.170e-2952.86Cleavage and polyadenylation specificity factor su... [more]
A0A6B2LG433.770e-2950.00Uncharacterized protein (Fragment) n=1 Tax=Arcella... [more]
A0A507FUE94.180e-2955.56Uncharacterized protein n=1 Tax=Chytriomyces confe... [more]
hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644B54C2.900e-2859.79hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A0L0RXM69.390e-2852.03Uncharacterized protein n=2 Tax=Allomyces macrogyn... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 39..64
e-value: 0.031
score: 23.5
coord: 10..36
e-value: 0.08
score: 22.1
coord: 65..88
e-value: 1.5
score: 14.9
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 10..37
score: 12.229868
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 38..65
score: 14.783703
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 67..89
score: 9.065741
NoneNo IPR availablePFAMPF14608zf-CCCH_2coord: 67..87
e-value: 0.0052
score: 17.3
coord: 44..59
e-value: 2.8
score: 8.7
coord: 16..34
e-value: 0.15
score: 12.7
NoneNo IPR availableGENE3D4.10.1000.10coord: 1..40
e-value: 1.2E-10
score: 43.1
coord: 41..95
e-value: 3.8E-8
score: 35.0
IPR045348CPSF complex subunit CPSF4-likePANTHERPTHR23102CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 4-RELATEDcoord: 2..97
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 38..62

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000813_piloncontigtig00000813_pilon:20108..20533 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9734.t1Ggra9734.t1Gracilaria gracilis GNS1m malemRNAtig00000813_pilon 20108..20533 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9734.t1 ID=Ggra9734.t1|Name=Ggra9734.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=142bp
MCDYLHSVDYLRMPECFFFSKYGECSNNECPYRHVDPEKKRNECPYYARG
FCRHGPKCRHRHVKKVACTNYLAGFCKDGPDCVFGHARFEIPRTADDEDM
FSNGIDRFGFGRSRGPAPRLITHENGMLATAAGTMPHGGRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
IPR045348CPSF4/Yth1
IPR036855Znf_CCCH_sf