Ggra9733.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9733.t1
Unique NameGgra9733.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length117
Homology
BLAST of Ggra9733.t1 vs. uniprot
Match: R7QJN7 (Ubiquitin-like domain-containing protein n=2 Tax=Rhodymeniophycidae TaxID=2045261 RepID=R7QJN7_CHOCR)

HSP 1 Score: 93.2 bits (230), Expect = 1.080e-22
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = 0
Query:    1 MLVKVKLLTGNQTEIDIDPTDTIWRIKERVEEKAGIDPKQQRLIFG 46
            MLVKVKLLTG QTEIDIDPTDTIWRIK+RVEEKAGIDPKQQRLIFG
Sbjct:    1 MLVKVKLLTGTQTEIDIDPTDTIWRIKQRVEEKAGIDPKQQRLIFG 46          
BLAST of Ggra9733.t1 vs. uniprot
Match: A0A5J4YSB8 (Nedd8 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YSB8_PORPP)

HSP 1 Score: 90.5 bits (223), Expect = 1.510e-21
Identity = 47/60 (78.33%), Postives = 50/60 (83.33%), Query Frame = 0
Query:    1 MLVKVKLLTGNQTEIDIDPTDTIWRIKERVEEKAGIDPKQQRLIFGVVDLVQLELAAVYH 60
            MLVKVKLLTGNQTEIDIDPTDTI RIKERVEEKAGIDP+QQRLIFG   L   + A  Y+
Sbjct:    1 MLVKVKLLTGNQTEIDIDPTDTIARIKERVEEKAGIDPQQQRLIFGGRQLADEKTANDYN 60          
BLAST of Ggra9733.t1 vs. uniprot
Match: A0A7S1XHP2 (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1XHP2_9RHOD)

HSP 1 Score: 89.7 bits (221), Expect = 4.980e-21
Identity = 47/60 (78.33%), Postives = 49/60 (81.67%), Query Frame = 0
Query:    1 MLVKVKLLTGNQTEIDIDPTDTIWRIKERVEEKAGIDPKQQRLIFGVVDLVQLELAAVYH 60
            MLVKVKLLTGNQTEIDID TDTI RIKERVEEKAGIDPKQQRLIFG   L   + A  Y+
Sbjct:    1 MLVKVKLLTGNQTEIDIDATDTIARIKERVEEKAGIDPKQQRLIFGGRQLADEKTAKEYN 60          
BLAST of Ggra9733.t1 vs. uniprot
Match: A0A1X6NL36 (Ubiquitin-like domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NL36_PORUM)

HSP 1 Score: 83.2 bits (204), Expect = 1.030e-18
Identity = 44/60 (73.33%), Postives = 47/60 (78.33%), Query Frame = 0
Query:    1 MLVKVKLLTGNQTEIDIDPTDTIWRIKERVEEKAGIDPKQQRLIFGVVDLVQLELAAVYH 60
            MLVKVKLLTG QTEIDID TDTI RIKERVEEK GIDP+QQRLIFG   L   + A  Y+
Sbjct:    1 MLVKVKLLTGTQTEIDIDSTDTIARIKERVEEKDGIDPRQQRLIFGGKQLADDKRADEYN 60          
BLAST of Ggra9733.t1 vs. uniprot
Match: NEDD8 (NEDD8 n=6 Tax=Dictyostelia TaxID=33083 RepID=NEDD8_DICDI)

HSP 1 Score: 74.7 bits (182), Expect = 1.940e-15
Identity = 36/46 (78.26%), Postives = 38/46 (82.61%), Query Frame = 0
Query:    1 MLVKVKLLTGNQTEIDIDPTDTIWRIKERVEEKAGIDPKQQRLIFG 46
            ML+KVK LTG + EIDIDPTD I RIKERVEEK GI P QQRLIFG
Sbjct:    1 MLIKVKTLTGKEIEIDIDPTDKIQRIKERVEEKEGIPPSQQRLIFG 46          
BLAST of Ggra9733.t1 vs. uniprot
Match: F4NY74 (Ubiquitin-like domain-containing protein n=3 Tax=Eukaryota TaxID=2759 RepID=F4NY74_BATDJ)

HSP 1 Score: 73.6 bits (179), Expect = 5.530e-15
Identity = 37/59 (62.71%), Postives = 43/59 (72.88%), Query Frame = 0
Query:    1 MLVKVKLLTGNQTEIDIDPTDTIWRIKERVEEKAGIDPKQQRLIFGVVDLVQLELAAVY 59
            ML+KVK LTG + EIDI+PTD + RIKERVEEK GI P QQRLIFG   +V  + A  Y
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVARIKERVEEKEGIPPPQQRLIFGGKQMVDDKTAQDY 59          
BLAST of Ggra9733.t1 vs. uniprot
Match: NEDD8 isoform X2 n=1 Tax=Copidosoma floridanum TaxID=29053 RepID=UPI0006C93C3E (NEDD8 isoform X2 n=1 Tax=Copidosoma floridanum TaxID=29053 RepID=UPI0006C93C3E)

HSP 1 Score: 73.2 bits (178), Expect = 6.890e-15
Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = 0
Query:    1 MLVKVKLLTGNQTEIDIDPTDTIWRIKERVEEKAGIDPKQQRLIFGVVDLVQLELAAVYHRALDINE 67
            ML+KVK LTG + EIDI+PTD + RIKERVEEK GI P+QQRLIF    +  L +    H+ +   E
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIFSGKQINILGMTRKLHKTIKYRE 67          
BLAST of Ggra9733.t1 vs. uniprot
Match: A0A815K765 (NEDD8 n=1 Tax=Rotaria magnacalcarata TaxID=392030 RepID=A0A815K765_9BILA)

HSP 1 Score: 74.7 bits (182), Expect = 1.140e-14
Identity = 46/116 (39.66%), Postives = 59/116 (50.86%), Query Frame = 0
Query:    1 MLVKVKLLTGNQTEIDIDPTDTIWRIKERVEEKAGIDPKQQRLIFG--------VVDLVQLELAAVYHRALDINEAFQAHRHIPRHAFTHARLSYRDKSGHKVPSVIYLYYGRHMK 108
            M++KVK LTG + E+DID TD I RIKERVEEK GI P QQRLIFG         V    +   +V H  L + E         R   +H    +  K G  + S I +YY  + +
Sbjct:    1 MMIKVKTLTGKEIEVDIDGTDKIERIKERVEEKEGIPPPQQRLIFGGKQMMDDKTVSEYNVNAGSVLHLVLALRE---------RDILSHKAQLFIQKCGETISSKIEIYYSNNQR 107          
BLAST of Ggra9733.t1 vs. uniprot
Match: A0A665V2Q7 (NEDD8 n=1 Tax=Echeneis naucrates TaxID=173247 RepID=A0A665V2Q7_ECHNA)

HSP 1 Score: 72.4 bits (176), Expect = 1.890e-14
Identity = 40/83 (48.19%), Postives = 52/83 (62.65%), Query Frame = 0
Query:    1 MLVKVKLLTGNQTEIDIDPTDTIWRIKERVEEKAGIDPKQQRLIFGVVDLVQLELAAVY--------HRALDINEAFQAHRHI 75
            ML+KVK LTG + EIDI+PTD + RIKERVEEK GI P+QQRLI+    +   + AA Y        H  L +    +A++HI
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIQGGSVLHLVLALRGGQKANKHI 83          
BLAST of Ggra9733.t1 vs. uniprot
Match: A0A7S0KC81 (Hypothetical protein n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0KC81_9CHLO)

HSP 1 Score: 73.2 bits (178), Expect = 2.200e-14
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 0
Query:    1 MLVKVKLLTGNQTEIDIDPTDTIWRIKERVEEKAGIDPKQQRLIFGVVDLVQLELAAVYH 60
            M++KVK LTG + EIDI+PTD++ RIKERVEEK GI P QQRLIFG   +   +LA  Y+
Sbjct:   37 MMIKVKTLTGKEIEIDIEPTDSVERIKERVEEKEGIPPVQQRLIFGGKQMNDEKLAKDYN 96          
The following BLAST results are available for this feature:
BLAST of Ggra9733.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7QJN71.080e-2295.65Ubiquitin-like domain-containing protein n=2 Tax=R... [more]
A0A5J4YSB81.510e-2178.33Nedd8 n=1 Tax=Porphyridium purpureum TaxID=35688 R... [more]
A0A7S1XHP24.980e-2178.33Hypothetical protein n=1 Tax=Erythrolobus australi... [more]
A0A1X6NL361.030e-1873.33Ubiquitin-like domain-containing protein n=1 Tax=P... [more]
NEDD81.940e-1578.26NEDD8 n=6 Tax=Dictyostelia TaxID=33083 RepID=NEDD8... [more]
F4NY745.530e-1562.71Ubiquitin-like domain-containing protein n=3 Tax=E... [more]
NEDD8 isoform X2 n=1 Tax=Copidosoma floridanum TaxID=29053 RepID=UPI0006C93C3E6.890e-1553.73NEDD8 isoform X2 n=1 Tax=Copidosoma floridanum Tax... [more]
A0A815K7651.140e-1439.66NEDD8 n=1 Tax=Rotaria magnacalcarata TaxID=392030 ... [more]
A0A665V2Q71.890e-1448.19NEDD8 n=1 Tax=Echeneis naucrates TaxID=173247 RepI... [more]
A0A7S0KC812.200e-1460.00Hypothetical protein n=1 Tax=Ostreococcus mediterr... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019956Ubiquitin domainPRINTSPR00348UBIQUITINcoord: 11..31
score: 22.68
coord: 32..52
score: 50.68
NoneNo IPR availableGENE3D3.10.20.90coord: 1..50
e-value: 5.7E-14
score: 54.0
NoneNo IPR availablePANTHERPTHR10666:SF173NEDD8coord: 3..59
NoneNo IPR availablePANTHERPTHR10666UBIQUITINcoord: 3..59
IPR000626Ubiquitin-like domainPFAMPF00240ubiquitincoord: 3..45
e-value: 1.6E-10
score: 40.6
IPR000626Ubiquitin-like domainPROSITEPS50053UBIQUITIN_2coord: 1..46
score: 13.031787
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 1..46

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000813_piloncontigtig00000813_pilon:19492..20073 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9733.t1Ggra9733.t1Gracilaria gracilis GNS1m malemRNAtig00000813_pilon 19492..20073 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9733.t1 ID=Ggra9733.t1|Name=Ggra9733.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=117bp
MLVKVKLLTGNQTEIDIDPTDTIWRIKERVEEKAGIDPKQQRLIFGVVDL
VQLELAAVYHRALDINEAFQAHRHIPRHAFTHARLSYRDKSGHKVPSVIY
LYYGRHMKNTVTSLHK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019956Ubiquitin_dom
IPR000626Ubiquitin-like_dom
IPR029071Ubiquitin-like_domsf