Ggra9725.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9725.t1
Unique NameGgra9725.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length462
Homology
BLAST of Ggra9725.t1 vs. uniprot
Match: A0A2V3IDL2 (F-box/LRR-repeat protein 7 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IDL2_9FLOR)

HSP 1 Score: 481 bits (1237), Expect = 6.590e-164
Identity = 265/466 (56.87%), Postives = 330/466 (70.82%), Query Frame = 0
Query:    1 MLYTLNINEHSATHTQQ--ESFFNAADRVSLSDAIALAFTCNTMLHIFRTSLTGVKLVSSWQTEQRTLVSACKIAATTLRAIHLECSAPVSPALKHVTVLRPPIRHFVLIGVKVSKLLMSDTISNVGPSLHKLVISAATSLDDTIVDVISFHCPKLRFLELGGSRRVTARSLNHVFERIGHNLEGLELSDLQHDSLGNRVLFAVAKHCKKLTSLRLLKLRWVSDSVLQFLFKLRAYHLTEFHIERCSLVTTHTLCAVAEHCTMLERLFFSLDKDRVNWG---LVSLPSLLESPNACSLHSTFESSNYSVVESAVIRISRRCRNLQHISLCELKLSDLAIQQISHACGSNLRALSLRHCSGMTDAALLSLAENVTILTSLDVSHNPFLTDQGLSTMLAALRHNLEELHVIGCKGLTDALLRRVIPKFAKRLRIIRLSYCNFSIQAVASIKEALPRLALHGGSPGLFY 461
            ML T+N +  S TH Q   ++F NAA+   L + IALAFTC TML+IFRTSLT VKLVSSWQ  Q TL+S CKIAATTLRAIHLECS+PVSPALKH+    PPIRHFVLIGV +SK L++D +  +G + HKLVISAA SLD   V +I+  C  LR+LEL GSR VTARSL  VFE +G NL GLEL+ L H SL ++VLFA A HC +LT L LL+L WV+D  LQ  FK  A+HLT FH+  C   T H LCA+  + + LE LFFSL  DR+N     L S  S L+    C+L  + + S +++ E  ++R ++R +NL+  SL +L LSD  +Q IS ACG  LR LSL +C G+TDA LLSLA+N+  LT+LD+S+N  LTD G+ST+LA + +NLE+LHVI CKGLTD LLR VIP FA+RLRIIRLSYC+FSI A+ ++K +LP L LHG S   FY
Sbjct:   38 MLLTMN-SHPSPTHHQHSHQTFINAANPRELHNGIALAFTCTTMLNIFRTSLTAVKLVSSWQNHQHTLLSICKIAATTLRAIHLECSSPVSPALKHLLSQPPPIRHFVLIGVNISKRLLNDLLQTLGHTFHKLVISAAPSLDHITVQIIARSCTALRYLELAGSRHVTARSLIQVFEHLGPNLRGLELNALHHPSLDDQVLFAAATHCNRLTYLCLLRLTWVADLGLQTFFKQAAHHLTRFHLHSCVNTTVHALCALDHYASALETLFFSLHTDRINCPPRVLTSPSSRLDLSPTCTLTESIQPSAFTLPEQPLLRNTKRSQNLRAFSLSQLPLSDHILQPISRACGETLRFLSLCNCPGLTDATLLSLAKNLKSLTTLDISYNSSLTDHGISTVLATMPNNLEQLHVISCKGLTDTLLRTVIPNFARRLRIIRLSYCDFSIPAIEAVKASLPLLELHGSSIAFFY 502          
BLAST of Ggra9725.t1 vs. uniprot
Match: R7QT49 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QT49_CHOCR)

HSP 1 Score: 380 bits (975), Expect = 2.950e-122
Identity = 207/442 (46.83%), Postives = 295/442 (66.74%), Query Frame = 0
Query:   17 QESFFNAADRVSLSDAIALAFTCNTMLHIFRTSLTGVKLVSSWQTEQRTLVSACKIAATTLRAIHLECSAPVSPALKHVTVLRPPIRHFVLIGVKVSKLLMSDTISNVGPSLHKLVISAATSLDDTIVDVISFHCPKLRFLELGGSRRVTARSLNHVFERIGHNLEGLELSDLQHDSLGNRVLFAVAKHCKKLTSLRLLKLRWVSDSVLQFLFKLRAYHLTEFHIERCSLVTTHTLCAVAEHCTMLERLFFSLDKDRVNWGLVSLPSLLESPNACS------LHSTFESSNYSVVESAVIRISRRCRNLQHISLCELKLSDLAIQQISHACGSNLRALSLRHCSGMTDAALLSLAENVTILTSLDVSHNPFLTDQGLSTMLAALRHNLEELHVIGCKGLTDALLRRVIPKFAKRLRIIRLSYCNFSIQAVASIKEALPRLAL 452
            +E F N ++ V+L + + LA TC+ M  +F+ +LTGVKLVSSWQ +Q TL++ACKIAA  LRA+H+ECSAPV+ AL  V  LRPP+RHFVLIG+ +SK LM+D I  VG SL  LV+SAA SLDDT+VD+IS  C  LR LELGGSRRV+  SL  +F RIG NL G+E++ + H+SL   VL A+ ++C KLT +RL  L WVSD  +    K RA  L E  I  C   +   LC   +  T+LE+L FS+ K   +W  + L   +E+    S      +  T +    S  E A++R+SR+CR+L H+++ ++ +SD A+  IS A G +LR L++RHC  + +A LLS A++   L SLD+S+ P + D     +L AL+ +LEEL ++GC GLT+  ++ +IP++ +RL+++RLSYCNFS+ A++S+KEALPR+ L
Sbjct:  161 REVFLNVSNPVALQNGLRLALTCHVMHSVFQDALTGVKLVSSWQVKQNTLIAACKIAANNLRAVHVECSAPVTAALTEVISLRPPVRHFVLIGINISKALMADIIFYVGISLENLVVSAAPSLDDTVVDLISDKCESLRHLELGGSRRVSRMSLIRLFTRIGINLCGIEMNSVHHESLNEDVLAAIGQYCSKLTCIRLKNLPWVSDVGMAGFLKQRAQQLKELRIVDCHRASFRILCFFCKRSTVLEKLHFSVQKG--SW--IPLRRQMEAGYITSSDEERVVEYTEDDIYLSGGEKALVRLSRKCRHLHHLTISDISVSDAALSCISKASGPSLRYLNIRHCYSLGNATLLSWAKHCRSLISLDISYLPMVEDSAFEELLRALQDSLEELQILGCTGLTNNAIQNIIPRYGRRLQVVRLSYCNFSMSALSSLKEALPRVTL 598          
BLAST of Ggra9725.t1 vs. uniprot
Match: A0A6A2YHM6 (EIN3-binding F-box protein 2 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2YHM6_HIBSY)

HSP 1 Score: 58.9 bits (141), Expect = 5.860e-6
Identity = 61/244 (25.00%), Postives = 110/244 (45.08%), Query Frame = 0
Query:  209 LTSLRLLKLRWVSDSVLQFLFKLRAYHLTEFHIERCSLVTTHTLCAVAEHCTMLERLFFSLDKDRVNWGL--VSLPSLLESPNACSLHSTFESSNYSVVESAVIRISRRCRNLQHISLCELKLSDLAIQQISHACGSNLRALSLRHCSGMTDAALLSLAENVTILTSLDVSHNPFLTDQGLSTMLAALRHNLEELHVIGCKGLTDALLRRVIPKFAKRLRIIRLSYCN-FSIQAVASIKEALPR 449
            L SL L+K   + D  L+         L    +  C    T +L  V + C  L+ L  S        GL  ++   LL    +C              E+ +++++        +S C L ++D  +  ++   G  L  L+L  C  +TDA+L+S+A+N   L+ LD+S    +TD G++ +    + N++ L + GC G+++ +L  ++ K  K L  + L +CN  S + +  + E L R
Sbjct:   87 LKSLTLVKCMGIKDISLEVPLPTPCNLLKSLSVRNCPGFGTRSLAMVGKLCPRLQHLDLS--------GLYGITTAGLLPLLESC--------------EAGLVKVN--------LSSC-LNMTDEVVLALTRLHGETLEFLNLDGCRKITDASLVSIADNCIFLSDLDISRCA-ITDSGVAALSRVEQLNMQVLSLSGCSGVSNKILP-LLKKLGKTLVGLNLQHCNSISSRTIELLVETLWR 297          
The following BLAST results are available for this feature:
BLAST of Ggra9725.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IDL26.590e-16456.87F-box/LRR-repeat protein 7 n=1 Tax=Gracilariopsis ... [more]
R7QT492.950e-12246.83Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A6A2YHM65.860e-625.00EIN3-binding F-box protein 2 n=1 Tax=Hibiscus syri... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 368..393
e-value: 140.0
score: 5.5
coord: 395..420
e-value: 20.0
score: 12.1
coord: 206..231
e-value: 120.0
score: 6.1
coord: 151..176
e-value: 4.9
score: 16.1
coord: 233..258
e-value: 33.0
score: 10.5
coord: 422..443
e-value: 480.0
score: 1.4
coord: 316..340
e-value: 56.0
score: 8.7
coord: 342..367
e-value: 3.1E-4
score: 30.1
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 25..270
e-value: 2.2E-22
score: 81.5
coord: 271..456
e-value: 3.4E-24
score: 87.4
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 190..268
coord: 306..434
coord: 50..188
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 100..451

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000813_piloncontigtig00000813_pilon:1554..2939 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9725.t1Ggra9725.t1Gracilaria gracilis GNS1m malemRNAtig00000813_pilon 1554..2939 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9725.t1 ID=Ggra9725.t1|Name=Ggra9725.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=462bp
MLYTLNINEHSATHTQQESFFNAADRVSLSDAIALAFTCNTMLHIFRTSL
TGVKLVSSWQTEQRTLVSACKIAATTLRAIHLECSAPVSPALKHVTVLRP
PIRHFVLIGVKVSKLLMSDTISNVGPSLHKLVISAATSLDDTIVDVISFH
CPKLRFLELGGSRRVTARSLNHVFERIGHNLEGLELSDLQHDSLGNRVLF
AVAKHCKKLTSLRLLKLRWVSDSVLQFLFKLRAYHLTEFHIERCSLVTTH
TLCAVAEHCTMLERLFFSLDKDRVNWGLVSLPSLLESPNACSLHSTFESS
NYSVVESAVIRISRRCRNLQHISLCELKLSDLAIQQISHACGSNLRALSL
RHCSGMTDAALLSLAENVTILTSLDVSHNPFLTDQGLSTMLAALRHNLEE
LHVIGCKGLTDALLRRVIPKFAKRLRIIRLSYCNFSIQAVASIKEALPRL
ALHGGSPGLFY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR032675LRR_dom_sf