Ggra9718.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9718.t1
Unique NameGgra9718.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length164
Homology
BLAST of Ggra9718.t1 vs. uniprot
Match: A0A2V3IWB5 (SKP1-like protein 11 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IWB5_9FLOR)

HSP 1 Score: 306 bits (784), Expect = 4.030e-105
Identity = 150/163 (92.02%), Postives = 159/163 (97.55%), Query Frame = 0
Query:    1 MAETPNQASSITLKLRSRDGEIFEVEKPVAMQINFVKGMLEDVDEVDGMEIPMGEVEAAILAKVVEYCRFHYQQELNQTSGDEVDRWERSFVQVDKSTLFQLILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDIHNDFTPEQLEEVRRDNAWCAEDR 163
            MA+ PNQ ++ITLKL+S+DGEIFEVEKPVAMQINFVKGMLEDVDE+DGMEIPMGEVEAAILAKVVEYC+FHYQQELNQT+ DEVDRWER+FVQVDKSTLFQLILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDI NDFTPEQLEEVRRDNAWCAEDR
Sbjct:    1 MADVPNQINNITLKLKSKDGEIFEVEKPVAMQINFVKGMLEDVDEIDGMEIPMGEVEAAILAKVVEYCKFHYQQELNQTNADEVDRWERAFVQVDKSTLFQLILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDIDNDFTPEQLEEVRRDNAWCAEDR 163          
BLAST of Ggra9718.t1 vs. uniprot
Match: R7QD44 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QD44_CHOCR)

HSP 1 Score: 276 bits (705), Expect = 4.610e-93
Identity = 136/159 (85.53%), Postives = 149/159 (93.71%), Query Frame = 0
Query:    5 PNQASSITLKLRSRDGEIFEVEKPVAMQINFVKGMLEDVDEVDGMEIPMGEVEAAILAKVVEYCRFHYQQELNQTSGDEVDRWERSFVQVDKSTLFQLILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDIHNDFTPEQLEEVRRDNAWCAEDR 163
            P+Q S+I LKL+S+DGE FEVEK VA QINFVKGMLEDVDEVDGMEIPMGEVEA+ILAKVVE+C+F +QQELNQTS DEVDRWE++FVQV+K TLFQLILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDI NDFTPEQL EVRRDNAWC++DR
Sbjct:    6 PSQQSNIMLKLKSKDGETFEVEKAVATQINFVKGMLEDVDEVDGMEIPMGEVEASILAKVVEFCKFRHQQELNQTSPDEVDRWEKAFVQVEKPTLFQLILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDIENDFTPEQLAEVRRDNAWCSDDR 164          
BLAST of Ggra9718.t1 vs. uniprot
Match: A0A7S0ZFH6 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZFH6_9RHOD)

HSP 1 Score: 181 bits (460), Expect = 1.570e-55
Identity = 90/149 (60.40%), Postives = 116/149 (77.85%), Query Frame = 0
Query:   13 LKLRSRDGEIFEVEKPVAMQINFVKGMLEDVDEVDGMEIPMGEVEAAILAKVVEYCRFHYQQELNQTSGDEVDRWERSFVQVDKSTLFQLILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDIHNDFTPEQLEEVRRDNAWCAE 161
            +KL S D E FEVE+ VA   N V  +LEDV E D   IP+  VEA ILAKV+EYCR+H+Q + N  + ++V++W++ FV+VDK TLF LILAAN+LD+Q+LLDLTCKT+ADMIKGK+ EQIR+EF I NDFTPE+ EE++R+NAW  E
Sbjct:   33 VKLVSSDQETFEVERGVATISNLVSHVLEDVGE-DEKLIPIPNVEARILAKVIEYCRYHHQLQTNPQADEDVEKWDKEFVRVDKPTLFSLILAANYLDIQALLDLTCKTIADMIKGKSAEQIRSEFGIENDFTPEEEEEIKRENAWVEE 180          
BLAST of Ggra9718.t1 vs. uniprot
Match: A0A5J4YW41 (SCF ubiquitin ligase complex protein SKP1a n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YW41_PORPP)

HSP 1 Score: 176 bits (446), Expect = 9.800e-54
Identity = 90/149 (60.40%), Postives = 112/149 (75.17%), Query Frame = 0
Query:   15 LRSRDGEIFEVEKPVAMQINFVKGMLEDVDEVDGMEIPMGEVEAAILAKVVEYCRFHYQQELNQTSGDEVDRWERSFVQVDKSTLFQLILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDIHNDFTPEQLEEVRRDNAWCAEDR 163
            L S D E F VE+ VA     V  +LEDV E +   IP+  VE+AILAKV+EYCR+HY  + N  S +++D+W + FV+VDK TLF LILAAN++D+QSLLDLTCK+VADMIKGK+ EQIR EF I NDFTPE+ EE+RR+NAW  EDR
Sbjct:   11 LVSSDNETFNVERGVANVSGLVANVLEDVSE-EETTIPIPNVESAILAKVIEYCRYHYHLQSNPQSDEDIDKWNKEFVRVDKPTLFHLILAANYMDIQSLLDLTCKSVADMIKGKSAEQIRGEFGIVNDFTPEEEEEIRRENAW-VEDR 157          
BLAST of Ggra9718.t1 vs. uniprot
Match: M2W233 (E3 ubiquitin ligase SCF complex SKP1 subunit n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2W233_GALSU)

HSP 1 Score: 174 bits (442), Expect = 3.730e-53
Identity = 87/153 (56.86%), Postives = 113/153 (73.86%), Query Frame = 0
Query:    9 SSITLKLRSRDGEIFEVEKPVAMQINFVKGMLEDVDEVDGMEIPMGEVEAAILAKVVEYCRFHYQQELNQTSGDEVDRWERSFVQVDKSTLFQLILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDIHNDFTPEQLEEVRRDNAWCAE 161
            +S T+KL S D EIFEVE  +      +K +LED ++ +   IP+  VE  ILAKVVEYCR+H   +    S ++++RW+R F+ VD+ TLF LILAAN+LD++SLLDLTCK VADMIKGK PE+IR EF+I NDFTPE+ EEVRR+NAWC +
Sbjct:    4 NSKTVKLVSSDNEIFEVETSIISLSETIKNVLEDTEDTES--IPLPNVEGRILAKVVEYCRYHSLLKTIPQSEEDIERWDREFLNVDQPTLFHLILAANYLDIKSLLDLTCKRVADMIKGKKPEEIRKEFNIVNDFTPEEEEEVRRENAWCED 154          
BLAST of Ggra9718.t1 vs. uniprot
Match: R1ERE6 (Uncharacterized protein n=3 Tax=Eukaryota TaxID=2759 RepID=R1ERE6_EMIHU)

HSP 1 Score: 171 bits (432), Expect = 1.310e-51
Identity = 85/156 (54.49%), Postives = 114/156 (73.08%), Query Frame = 0
Query:    6 NQASSITLKLRSRDGEIFEVEKPVAMQINFVKGMLEDVDEVDGMEIPMGEVEAAILAKVVEYCRFHYQQELNQTSGDEVDRWERSFVQVDKSTLFQLILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDIHNDFTPEQLEEVRRDNAWCAE 161
            + + +  +KL+S+  EIFEVEK VA +   VK M+ED      + +PM  V++ IL KV+EYC++H++ E      DE + W++ FV+VD  TLF LILAAN+LD++SLLDLTCKTVAD IKGKTPE+IR  F+I NDFTPE+ EEV+R+NAWC E
Sbjct:    3 DDSEATAVKLKSKQEEIFEVEKEVACRSVTVKNMVEDTGLDTPVPLPM--VDSKILIKVIEYCKYHHRAEQESLPEDEKNVWDKDFVKVDDETLFNLILAANYLDIKSLLDLTCKTVADEIKGKTPEEIRIRFNIKNDFTPEEEEEVKRENAWCEE 156          
BLAST of Ggra9718.t1 vs. uniprot
Match: A0A8J5XJL0 (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XJL0_DIALT)

HSP 1 Score: 169 bits (429), Expect = 3.870e-51
Identity = 87/161 (54.04%), Postives = 115/161 (71.43%), Query Frame = 0
Query:    1 MAETPNQASSITLKLRSRDGEIFEVEKPVAMQINFVKGMLEDVDEVDGMEIPMGEVEAAILAKVVEYCRFHYQQELNQTSGDEVDRWERSFVQVDKSTLFQLILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDIHNDFTPEQLEEVRRDNAWCAE 161
            MA+   Q+  I  KL+S+  E+FEVE+ VA +   VK M+ED      + +PM  V++ IL KV+EYC++H+  E  +   +E   WE+ FV+VD  TLF LILAAN+LD++SLLDLTCKTVAD IKGKTPE+IR  F+I NDFTPE+ EEV+R+NAWC E
Sbjct:    1 MADDEEQSPFI--KLKSKQEELFEVEREVACRSVTVKNMVEDTGSDTPVPLPM--VDSRILTKVIEYCKYHHGSETARVPEEEKANWEKDFVKVDDETLFNLILAANYLDIKSLLDLTCKTVADEIKGKTPEEIRVRFNITNDFTPEEEEEVKRENAWCEE 157          
BLAST of Ggra9718.t1 vs. uniprot
Match: A0A7S0QBC9 (Hypothetical protein n=2 Tax=Prymnesiophyceae TaxID=2608131 RepID=A0A7S0QBC9_9EUKA)

HSP 1 Score: 166 bits (421), Expect = 6.140e-50
Identity = 82/151 (54.30%), Postives = 113/151 (74.83%), Query Frame = 0
Query:   13 LKLRSRDGEIFEVEKPVAMQINFVKGMLEDVDEVDGME--IPMGEVEAAILAKVVEYCRFHYQQELNQTSGDEVDRWERSFVQVDKSTLFQLILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDIHNDFTPEQLEEVRRDNAWCAE 161
            +KL+S+  EIFEV+K VA +   V+ M+ED     G++  +P+  V++ IL KV+EYC++H++ E      D+ + W++ FV+VD  TLF LILAAN+LD++SLLDLTCKTVAD IKGKTPE+IR  F+I NDFTPE+ EEV+R+NAWC E
Sbjct:   10 VKLKSKQEEIFEVDKEVACRSVTVRNMVEDT----GLDAPVPLPMVDSKILIKVIEYCKYHHRAEAEALPEDDKNVWDKDFVKVDDETLFNLILAANYLDIKSLLDLTCKTVADEIKGKTPEEIRIRFNIKNDFTPEEEEEVKRENAWCEE 156          
BLAST of Ggra9718.t1 vs. uniprot
Match: S5U247 (S-phase kinase-associated protein 1 n=2 Tax=Bangiaceae TaxID=31345 RepID=S5U247_NEOYE)

HSP 1 Score: 167 bits (422), Expect = 7.360e-50
Identity = 89/163 (54.60%), Postives = 117/163 (71.78%), Query Frame = 0
Query:    1 MAETPNQASSITLKLRSRDGEIFEVEKPVAMQINFVKGMLEDVDEVDGMEIPMGEVEAAILAKVVEYCRFHYQQELNQTSGDEVDRWERSFVQVDKSTLFQLILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDIHNDFTPEQLEEVRRDNAWCAEDR 163
            MA      S   + + S+D E F VEK VA     ++ +L DV E +  +IP+  V+A ILAKV+EY ++H++        DEV RW+R FV+VDKSTLF L+LAAN+L++QSLLDLT +TVA++IKGKTPEQIRAEF I NDFTPE+ EE++RDNAW +EDR
Sbjct:   14 MATNEEAPSKRMITILSQDKEKFVVEKGVATMATLIEDLLADVGEGED-KIPLQNVDARILAKVIEYMKYHFKLTETPQPEDEVRRWDREFVRVDKSTLFHLVLAANYLNIQSLLDLTTQTVAELIKGKTPEQIRAEFGIVNDFTPEEEEEIKRDNAW-SEDR 174          
BLAST of Ggra9718.t1 vs. uniprot
Match: A0A0D6QSJ7 (SKP1-like protein n=2 Tax=Araucariaceae TaxID=25664 RepID=A0A0D6QSJ7_ARACU)

HSP 1 Score: 166 bits (420), Expect = 7.690e-50
Identity = 84/154 (54.55%), Postives = 113/154 (73.38%), Query Frame = 0
Query:   12 TLKLRSRDGEIFEVEKPVAMQINFVKGMLEDVDEVDGME--IPMGEVEAAILAKVVEYCRFHYQQELNQTSGDEVD--RWERSFVQVDKSTLFQLILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDIHNDFTPEQLEEVRRDNAWCAE 161
            TL+L+S D +IFEVE+ VA +   +K M+ED+    G++  +P+  V   ILA+VVEYCR+H +   N +S  E D  RW   FV VD++TLF LILAAN+L+++SLLDLTC+TVADMIKGKTPE+IR  F+I NDFTPE+ EE++ +NAW  E
Sbjct:    4 TLRLKSSDDQIFEVEEAVAFESQTIKNMIEDI----GIDTTVPLFNVSGKILARVVEYCRYHVEANRNNSSLSEEDFKRWNEEFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEIKHENAWAFE 153          
The following BLAST results are available for this feature:
BLAST of Ggra9718.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IWB54.030e-10592.02SKP1-like protein 11 n=1 Tax=Gracilariopsis chorda... [more]
R7QD444.610e-9385.53Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S0ZFH61.570e-5560.40Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A5J4YW419.800e-5460.40SCF ubiquitin ligase complex protein SKP1a n=1 Tax... [more]
M2W2333.730e-5356.86E3 ubiquitin ligase SCF complex SKP1 subunit n=1 T... [more]
R1ERE61.310e-5154.49Uncharacterized protein n=3 Tax=Eukaryota TaxID=27... [more]
A0A8J5XJL03.870e-5154.04Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A7S0QBC96.140e-5054.30Hypothetical protein n=2 Tax=Prymnesiophyceae TaxI... [more]
S5U2477.360e-5054.60S-phase kinase-associated protein 1 n=2 Tax=Bangia... [more]
A0A0D6QSJ77.690e-5054.55SKP1-like protein n=2 Tax=Araucariaceae TaxID=2566... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001232S-phase kinase-associated protein 1-likeSMARTSM00512skp1_3coord: 10..111
e-value: 1.5E-28
score: 110.9
IPR016072SKP1 component, dimerisationPFAMPF01466Skp1coord: 112..159
e-value: 6.1E-25
score: 87.0
IPR016073SKP1 component, POZ domainPFAMPF03931Skp1_POZcoord: 13..72
e-value: 1.4E-18
score: 66.8
IPR016897S-phase kinase-associated protein 1PIRSFPIRSF028729SCF_Skpcoord: 1..162
e-value: 2.0E-53
score: 178.5
IPR016897S-phase kinase-associated protein 1PANTHERPTHR11165SKP1coord: 11..160
IPR011333SKP1/BTB/POZ domain superfamilyGENE3D3.30.710.10Potassium Channel Kv1.1; Chain Acoord: 7..162
e-value: 8.1E-57
score: 193.8
IPR011333SKP1/BTB/POZ domain superfamilySUPERFAMILY54695POZ domaincoord: 13..74
NoneNo IPR availablePANTHERPTHR11165:SF122SUBFAMILY NOT NAMEDcoord: 11..160
NoneNo IPR availableCDDcd18322BTB_POZ_SKP1coord: 12..126
e-value: 9.18266E-45
score: 141.575
IPR036296SKP1-like, dimerisation domain superfamilySUPERFAMILY81382Skp1 dimerisation domain-likecoord: 85..159

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000105_piloncontigtig00000105_pilon:78329..79038 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9718.t1Ggra9718.t1Gracilaria gracilis GNS1m malemRNAtig00000105_pilon 78329..79038 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9718.t1 ID=Ggra9718.t1|Name=Ggra9718.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=164bp
MAETPNQASSITLKLRSRDGEIFEVEKPVAMQINFVKGMLEDVDEVDGME
IPMGEVEAAILAKVVEYCRFHYQQELNQTSGDEVDRWERSFVQVDKSTLF
QLILAANFLDVQSLLDLTCKTVADMIKGKTPEQIRAEFDIHNDFTPEQLE
EVRRDNAWCAEDR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001232SKP1-like
IPR016072Skp1_comp_dimer
IPR016073Skp1_comp_POZ
IPR016897SKP1
IPR011333SKP1/BTB/POZ_sf
IPR036296SKP1-like_dim_sf