Ggra9697.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9697.t1
Unique NameGgra9697.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length288
Homology
BLAST of Ggra9697.t1 vs. uniprot
Match: A0A2V3INK8 (30S ribosomal protein S4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INK8_9FLOR)

HSP 1 Score: 145 bits (366), Expect = 1.730e-38
Identity = 93/198 (46.97%), Postives = 117/198 (59.09%), Query Frame = 0
Query:  104 KHKAVSPQLLSLHIFKKQKMRLYYGAICDAMFNKYVQKSARMRHSVNVDAQLIRLVEHRLGIFLYRNAFTITPAQARQ--------------RTDESRRSDGEVLSDETKRNYEHCATPCRTCAERTVEKWAWTRASWIVSHAKVEGILPLMNIDRVGFSPALVRLPKVEKAHSMTRAALLPFIRGAQLNQLAAMSAY 287
            ++KAV+ QL ++H+F+KQKMRLYYGA+ DA F KYVQ++   R+  N DA LIRL+E RL  FLYR  F  TP+QARQ                   R   G+V+S  +  + E+       CA+  + +     ASWIVS     G+LP M IDRVG S  LVR P  E+A SMTRAAL P+IR A LN  AAM AY
Sbjct:   75 RNKAVAAQLNTIHLFEKQKMRLYYGAMRDAKFKKYVQEATCTRY--NTDAHLIRLLELRLDTFLYRTGFVKTPSQARQWIYHEHVLVNNDVVSVKSYRMRPGDVMSIAS-HHVENAFLAATDCAQ--MRQSFGCGASWIVSRNDPAGMLPWMEIDRVGLSAILVRHPTDEEARSMTRAALFPYIRDANLNPHAAMRAY 267          
BLAST of Ggra9697.t1 vs. uniprot
Match: R7QFH5 (S4 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QFH5_CHOCR)

HSP 1 Score: 126 bits (317), Expect = 3.450e-31
Identity = 81/198 (40.91%), Postives = 108/198 (54.55%), Query Frame = 0
Query:  104 KHKAVSPQLLSLHIFKKQKMRLYYGAICDAMFNKYVQKSARMRHSVNVDAQLIRLVEHRLGIFLYRNAFTITPAQARQRTDES--------------RRSDGEVLSDETKRNYEHCATPCRTCAERTVEKWAWTRASWIVSHAKVEGILPLMNIDRVGFSPALVRLPKVEKAHSMTRAALLPFIRGAQLNQLAAMSAY 287
            ++K+   QL + H+F+KQKM+LYYGA+ D  F +YV ++   R   N DA L+RL+E RL  FLYR     TP Q RQ  + +              R   G+V+S    R+ EH     R  AE   +      ASWI+S     G+LP M IDR G +  LVR P  ++A +M RAAL P+IR A+LN  AAM AY
Sbjct:   82 RNKSAGGQLFTTHLFEKQKMKLYYGAMGDKKFKRYVDEARNCRR--NTDAMLLRLLELRLDTFLYRTGLVKTPMQGRQWINHAQILVNGRPVNMKGNRLRPGDVVSVRD-RHQEHALKASREAAELRAK--LGLGASWILSDPDPAGMLPWMEIDRSGLAAVLVREPTDDEARAMARAALFPYIRDAKLNPHAAMRAY 274          
The following BLAST results are available for this feature:
BLAST of Ggra9697.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3INK81.730e-3846.9730S ribosomal protein S4 n=1 Tax=Gracilariopsis ch... [more]
R7QFH53.450e-3140.91S4 domain-containing protein n=1 Tax=Chondrus cris... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.1050.10Ribosomal Protein S4 Delta 41; Chain A, domain 1coord: 73..175
e-value: 4.4E-6
score: 28.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..60
NoneNo IPR availableSUPERFAMILY55174Alpha-L RNA-binding motifcoord: 109..181

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000084_piloncontigtig00000084_pilon:399642..400505 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9697.t1Ggra9697.t1Gracilaria gracilis GNS1m malemRNAtig00000084_pilon 399642..400505 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9697.t1 ID=Ggra9697.t1|Name=Ggra9697.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=288bp
MSRSFVDPPNNAVNPAVHQAIIKRQCGASGPPQNARQLPTQKPAPPLRRG
QFPSSRHRNTCQAAWEGRASDASNAIRSASESHQASGLHTAGILLRTVSA
THSKHKAVSPQLLSLHIFKKQKMRLYYGAICDAMFNKYVQKSARMRHSVN
VDAQLIRLVEHRLGIFLYRNAFTITPAQARQRTDESRRSDGEVLSDETKR
NYEHCATPCRTCAERTVEKWAWTRASWIVSHAKVEGILPLMNIDRVGFSP
ALVRLPKVEKAHSMTRAALLPFIRGAQLNQLAAMSAY*
back to top