Ggra9690.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9690.t1
Unique NameGgra9690.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length216
Homology
BLAST of Ggra9690.t1 vs. uniprot
Match: A0A2V3IRT5 (Bromodomain and PHD finger-containing protein 3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRT5_9FLOR)

HSP 1 Score: 245 bits (626), Expect = 6.250e-75
Identity = 126/148 (85.14%), Postives = 132/148 (89.19%), Query Frame = 0
Query:    1 MAPSHPPRAPTRALRDPKELLKKRGPDLLRKISDRDRYGIFLQPVDVDAIDGYAELIARPMDLSTCQNNLAMGVYRTPMELRADLNLIWSNCCIFNADDSIYFKEAVRLRALAARYYDDLVRALVKDGGASALGLSRG-GASSSARLP 147
            MAPS PPRA     RDPKELLKKRG DL+RKISD+DRYGIFLQPVDVDAIDGYA+LIARPMDLSTCQNNLAMGVYRTPMELR DL+LIWSNCC FNADDSIYFKEAVRLRA+ ARYYDD V+ALVKDG A ALGL R  GASSSARLP
Sbjct:    1 MAPSRPPRAXXXXXRDPKELLKKRGADLIRKISDKDRYGIFLQPVDVDAIDGYAQLIARPMDLSTCQNNLAMGVYRTPMELRTDLDLIWSNCCTFNADDSIYFKEAVRLRAVCARYYDDFVKALVKDGVAPALGLYRASGASSSARLP 148          
BLAST of Ggra9690.t1 vs. uniprot
Match: A0A2V3IZV9 (Bromodomain and PHD finger-containing protein 3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZV9_9FLOR)

HSP 1 Score: 146 bits (369), Expect = 1.720e-41
Identity = 75/113 (66.37%), Postives = 81/113 (71.68%), Query Frame = 0
Query:    1 MAPSHPPRAPTRALRDPKELLKKRGPDLLRKISDRDRYGIFLQPVDVDAIDGYAELIARPMDLSTCQNNLAMGVYRTPMELRADLNLIWSNCCIFNADDSIYFKEAVRLRALA 113
            MAPS  PRAPT  LRDPK+LLKK   +LL+  SDRD Y IFLQPVD   ID YAEL   P DLS C  NLAMGVYRT M LRAD +L+W NCC FNADDSIYFK A+  R  A
Sbjct:    1 MAPSRQPRAPTCVLRDPKDLLKKGSNNLLKNFSDRDGYYIFLQPVDFIDIDSYAELFVHPPDLSVCHRNLAMGVYRTLMNLRADRDLMWCNCCTFNADDSIYFKGAMCSRQFA 113          
BLAST of Ggra9690.t1 vs. uniprot
Match: A0A2V3ITY5 (Histone acetyltransferase GCN5 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITY5_9FLOR)

HSP 1 Score: 130 bits (327), Expect = 1.170e-34
Identity = 67/102 (65.69%), Postives = 78/102 (76.47%), Query Frame = 0
Query:    6 PPRAPTRALRDPKELLKKRGPDLLRKISDRDRYGIFLQPVDVDAIDGYAELIARPMDLSTCQNNLAMGVYRTPMELRADLNLIWSNCCIFNADDSIYFKEAV 107
            P R PTR L D K+ LKKRG +LL K+S  D Y +FLQ VD  AI+GYAE+ A PM+LS C  NLAMGVYR  M+LRADL+LIW NCC FNA+DSIYFKEA+
Sbjct:   45 PLRVPTRVLGDLKKQLKKRGNNLLGKVSYCDGYWMFLQHVDFVAINGYAEVFAHPMELSICHYNLAMGVYRMLMKLRADLDLIWYNCCTFNANDSIYFKEAM 146          
BLAST of Ggra9690.t1 vs. uniprot
Match: A0A7S1TI14 (Hypothetical protein (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TI14_9RHOD)

HSP 1 Score: 103 bits (257), Expect = 3.950e-25
Identity = 45/89 (50.56%), Postives = 63/89 (70.79%), Query Frame = 0
Query:   25 GPDLLRKISDRDRYGIFLQPVDVDAIDGYAELIARPMDLSTCQNNLAMGVYRTPMELRADLNLIWSNCCIFNADDSIYFKEAVRLRALA 113
            G ++L K+ ++DRY IF +PVD + + GY E+I  PMDL+TC+N L  G Y     +R D++LIWSNCC FN  D+++FKEAV+LR  A
Sbjct:   13 GTEILDKLVEKDRYQIFWEPVDPNIVVGYLEVIKNPMDLATCRNKLESGEYANLDAMRRDVDLIWSNCCTFNPRDTVFFKEAVKLREFA 101          
BLAST of Ggra9690.t1 vs. uniprot
Match: R7Q6X1 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q6X1_CHOCR)

HSP 1 Score: 93.6 bits (231), Expect = 1.850e-18
Identity = 51/127 (40.16%), Postives = 73/127 (57.48%), Query Frame = 0
Query:    6 PPRAPTRALRDPK---ELLKKRGPDLLRKISDRDRYGIFLQPVDVDAIDGYAELIARPMDLSTCQNNLAMGVYRTPMELRADLNLIWSNCCIFNADD--SIYFKEAVRLRALAARYYDDLVRALVKD 127
            PP AP      P    E  ++R  D+L +++ +D   IFL+PV+ D +DGYAE I RPMDL+T +  L    YR+  E R DL+LIWSNC +FN  +  +I+ + A+ LR L  +      + L KD
Sbjct:   38 PPNAPRDGRERPPPLPECFRRRCTDVLDRLNKKDHLNIFLEPVNTDEVDGYAETIKRPMDLTTMRTKLGKQSYRSLGEFRRDLDLIWSNCLLFNGKEPTNIFSRTAIELRRLTEKLIASTRQHLEKD 164          
BLAST of Ggra9690.t1 vs. uniprot
Match: A0A5J4Z4M7 (Bromodomain and PHD finger-containing protein 3 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z4M7_PORPP)

HSP 1 Score: 90.1 bits (222), Expect = 2.830e-17
Identity = 53/151 (35.10%), Postives = 80/151 (52.98%), Query Frame = 0
Query:    9 APTRALRDPKELLKKRGPDLLRKISDRDRYGIFLQPVDVDAIDGYAELIARPMDLSTCQNNLAMGVYRTPMELRADLNLIWSNCCIFNADDSIYFKEAVRLRALAAR--------YYDDLVRALVKDGGASALGLSRGGASSSARLPPRKP 151
            AP +  R  ++ L++    +L  +  RD  GIFL+PV V A+ GY+++I  PMDLSTC++ +    YR+      DL LIWSNC +FN   SI+ K+A +LR ++ +        Y+DD+     +     A      G+    RLPP  P
Sbjct:  198 APNKPPRTTRDALRRAFVFVLDALFKRDTRGIFLEPVPVRAVPGYSDVIKNPMDLSTCRSKVMRNEYRSFEHFEEDLELIWSNCELFNEPTSIFAKQAGKLRDISLKLCRSALKQYHDDVQSIKQQQRFQDAQQAHANGSPDGQRLPPTHP 348          
BLAST of Ggra9690.t1 vs. uniprot
Match: M2XV88 (DNA-binding bromodomain-containing protein isoform 1 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XV88_GALSU)

HSP 1 Score: 89.4 bits (220), Expect = 2.960e-17
Identity = 39/106 (36.79%), Postives = 62/106 (58.49%), Query Frame = 0
Query:   15 RDPKELLKKRGPDLLRKISDRDRYGIFLQPVDVDAIDGYAELIARPMDLSTCQNNLAMGVYRTPMELRADLNLIWSNCCIFNADDSIYFKEAVRLRALAARYYDDL 120
            R+P+  L   G ++L K+  RD   IF +PVD   +  Y  ++ +PMDL T +  L    Y    ELR D++LIW NCC++NA D+ ++  AV+LR +  + ++ L
Sbjct:   22 REPQHCLIVAGNEILEKLGKRDTQDIFAEPVDTSVVTDYLTIVKKPMDLGTVREKLNRAQYTCVEELREDIDLIWDNCCLYNAPDTEFYLLAVKLREVTVKLFEQL 127          
BLAST of Ggra9690.t1 vs. uniprot
Match: A0A5J4YHT9 (Bromodomain-containing protein 1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YHT9_PORPP)

HSP 1 Score: 88.6 bits (218), Expect = 7.120e-17
Identity = 51/129 (39.53%), Postives = 71/129 (55.04%), Query Frame = 0
Query:   21 LKKRGPDLLRKISDRDRYGIFLQPVDVDAIDGYAELIARPMDLSTCQNNLAMGVYRTPM-ELRADLNLIWSNCCIFNADDSIYFKEAVRLRALAARYYDDLVRALVKDGGASALGLSRGGASSSARLPP 148
            L+K G   + ++  RD+   F QPV +D +  Y  ++  PMDL T +  LA G Y T   +LR D+ LIW+NCC +NA  S Y+K+A RL+AL  + +  LV  L   G    +  S GGAS  A   P
Sbjct:   91 LRKYGLAWVDRMIRRDKSSYFTQPVPLDLVPDYLSIVETPMDLGTLRERLASGTYYTDAAKLRDDMELIWNNCCKYNASSSDYYKKAQRLKALMKQSFPQLVAKLQATG----VSTSGGGASGLANASP 215          
BLAST of Ggra9690.t1 vs. uniprot
Match: A0A2V3IRT2 (Bromodomain and PHD finger-containing protein 3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRT2_9FLOR)

HSP 1 Score: 86.3 bits (212), Expect = 6.160e-16
Identity = 50/127 (39.37%), Postives = 72/127 (56.69%), Query Frame = 0
Query:    6 PPRAPTRALRDPKEL---LKKRGPDLLRKISDRDRYGIFLQPVDVDAIDGYAELIARPMDLSTCQNNLAMGVYRTPMELRADLNLIWSNCCIFNADD--SIYFKEAVRLRALAARYYDDLVRALVKD 127
            PP AP      P  L    K R  D+L ++S +D Y IFL+PV    + GY ++I RPMDLST ++ L    Y++  E R DL+LIWSNC +FN  +  +++ K+A+ LR L  +      + L KD
Sbjct:   34 PPNAPRDGRERPPSLAECFKHRCSDVLDRLSKKDHYDIFLEPVK--GVAGYHDIIKRPMDLSTVRSKLTSAEYKSLGEFRKDLDLIWSNCLLFNGKEPTNVFSKKAIELRRLTDKLIVTTRQQLEKD 158          
BLAST of Ggra9690.t1 vs. uniprot
Match: A0A022RU06 (Bromo domain-containing protein n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022RU06_ERYGU)

HSP 1 Score: 85.1 bits (209), Expect = 1.360e-15
Identity = 36/93 (38.71%), Postives = 62/93 (66.67%), Query Frame = 0
Query:   28 LLRKISDRDRYGIFLQPVDVDAIDGYAELIARPMDLSTCQNNLAMGVYRTPMELRADLNLIWSNCCIFNADDSIYFKEAVRLRALAARYYDDL 120
            +L ++  +D YG+FL+PVD+D +  Y E++ +PMD  T +  L  GVY+T  +L  D+ LI SN  ++NA D++Y ++A  ++ LA R +++L
Sbjct:  179 VLDRLQKKDTYGVFLEPVDIDELPDYLEIVEQPMDFGTVRKKLDDGVYKTLEQLEGDVFLICSNAMLYNASDTVYHRQARTIQDLAKRDFENL 271          
The following BLAST results are available for this feature:
BLAST of Ggra9690.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IRT56.250e-7585.14Bromodomain and PHD finger-containing protein 3 n=... [more]
A0A2V3IZV91.720e-4166.37Bromodomain and PHD finger-containing protein 3 n=... [more]
A0A2V3ITY51.170e-3465.69Histone acetyltransferase GCN5 n=1 Tax=Gracilariop... [more]
A0A7S1TI143.950e-2550.56Hypothetical protein (Fragment) n=1 Tax=Compsopogo... [more]
R7Q6X11.850e-1840.16Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A5J4Z4M72.830e-1735.10Bromodomain and PHD finger-containing protein 3 n=... [more]
M2XV882.960e-1736.79DNA-binding bromodomain-containing protein isoform... [more]
A0A5J4YHT97.120e-1739.53Bromodomain-containing protein 1 n=1 Tax=Porphyrid... [more]
A0A2V3IRT26.160e-1639.37Bromodomain and PHD finger-containing protein 3 n=... [more]
A0A022RU061.360e-1538.71Bromo domain-containing protein n=1 Tax=Erythranth... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 201..215
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 140..161
NoneNo IPR availablePANTHERPTHR22881BROMODOMAIN CONTAINING PROTEINcoord: 14..206
NoneNo IPR availablePANTHERPTHR22881:SF11LD22651Pcoord: 14..206
NoneNo IPR availableCDDcd04369Bromodomaincoord: 21..117
e-value: 3.81012E-26
score: 95.1318
IPR001487BromodomainPRINTSPR00503BROMODOMAINcoord: 84..103
score: 33.37
coord: 50..66
score: 41.18
coord: 36..49
score: 30.12
coord: 66..84
score: 22.54
IPR001487BromodomainSMARTSM00297bromo_6coord: 14..122
e-value: 1.0E-23
score: 94.8
IPR001487BromodomainPFAMPF00439Bromodomaincoord: 28..106
e-value: 1.9E-18
score: 66.3
IPR001487BromodomainPROSITEPS50014BROMODOMAIN_2coord: 33..103
score: 14.5688
IPR036427Bromodomain-like superfamilyGENE3D1.20.920.10coord: 4..127
e-value: 2.6E-27
score: 97.3
IPR036427Bromodomain-like superfamilySUPERFAMILY47370Bromodomaincoord: 6..122

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000084_piloncontigtig00000084_pilon:248425..249072 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9690.t1Ggra9690.t1Gracilaria gracilis GNS1m malemRNAtig00000084_pilon 248425..249072 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9690.t1 ID=Ggra9690.t1|Name=Ggra9690.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=216bp
MAPSHPPRAPTRALRDPKELLKKRGPDLLRKISDRDRYGIFLQPVDVDAI
DGYAELIARPMDLSTCQNNLAMGVYRTPMELRADLNLIWSNCCIFNADDS
IYFKEAVRLRALAARYYDDLVRALVKDGGASALGLSRGGASSSARLPPRK
PPRPRSSDFSTRLRSPFLQHSDLLSRTAARARTAKRRRAHVLRNIAARAH
YDTAKHRRARARGEL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001487Bromodomain
IPR036427Bromodomain-like_sf