Ggra9689.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra9689.t1
Unique Name	Ggra9689.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	123

Homology

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BLAST of Ggra9689.t1 vs. uniprot
Match: A0A2V3J1Y6 (E3 ubiquitin protein ligase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1Y6_9FLOR)

HSP 1 Score: 76.6 bits (187), Expect = 7.420e-14
Identity = 59/142 (41.55%), Postives = 79/142 (55.63%), Query Frame = 0

Query:    2 QFEQENKGLIFENEGVRAAVSKREARMLYLKE-LTLQLGKAPYIKLHEAERKHTEEQRAEAKASDKKAMED--------------------LRRQMDELRWIADLAKEEKGKVAIPHEVRKMEVGAASAVIKAAEKRTKMTE 122
            Q  Q+NK LI ENE +RA V+KR+A ++ +K  L   L +     LH+   K    Q  +   ++++                        LRRQMDELR +AD AK EK KV + +E RKME GAA+AVIKAAEKRTK++E
Sbjct:  290 QLHQDNKRLILENEALRADVAKRDATIVPIKTILNTGLYQTMEANLHQVYLKERTWQLEKEAQNEQRXXXXXXXXXXXXXXXXXXXXXXXALRRQMDELRRVADAAKVEKDKVVMTYEARKMEAGAAAAVIKAAEKRTKVSE 431

[Close]

BLAST of Ggra9689.t1 vs. uniprot
Match: R7QQ82 (E3 ubiquitin protein ligase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQ82_CHOCR)

HSP 1 Score: 74.3 bits (181), Expect = 4.800e-13
Identity = 47/94 (50.00%), Postives = 63/94 (67.02%), Query Frame = 0

Query:   29 LYLKELTLQLGKAPYIKLHEAERKHTEEQRAEAKASDKKAMEDLRRQMDELRWIADLAKEEKGKVAIPHEVRKMEVGAASAVIKAAEKRTKMTE 122
            LYLKE T Q  +    +  EAERK  EE   E K + +K+M D+RRQM++LR IAD AK +K KV + +E RKME G A++VI AAE+R  ++E
Sbjct:  371 LYLKEQTSQAERDQQNEDREAERKAWEEHLEETKTNHEKSMADMRRQMEDLRRIADAAKIDKDKVVMTYEARKMEAGNAASVISAAERRANVSE 464

The following BLAST results are available for this feature:

BLAST of Ggra9689.t1 vs. uniprot

BLAST of Ggra9689.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3J1Y6	7.420e-14	41.55	E3 ubiquitin protein ligase n=1 Tax=Gracilariopsis...	[more]
R7QQ82	4.800e-13	50.00	E3 ubiquitin protein ligase n=1 Tax=Chondrus crisp...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 69..89
None	No IPR available	COILS	Coil	Coil	coord: 44..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..70

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000084_pilon	contig	tig00000084_pilon:235358..235789 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9689.t1	Ggra9689.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000084_pilon 235358..235789 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra9689.t1 ID=Ggra9689.t1|Name=Ggra9689.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=123bp
MQFEQENKGLIFENEGVRAAVSKREARMLYLKELTLQLGKAPYIKLHEAE
RKHTEEQRAEAKASDKKAMEDLRRQMDELRWIADLAKEEKGKVAIPHEVR
KMEVGAASAVIKAAEKRTKMTE*