Ggra9676.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9676.t1
Unique NameGgra9676.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length430
Homology
BLAST of Ggra9676.t1 vs. uniprot
Match: A0A2V3IMD5 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMD5_9FLOR)

HSP 1 Score: 290 bits (741), Expect = 2.870e-90
Identity = 172/443 (38.83%), Postives = 246/443 (55.53%), Query Frame = 0
Query:   36 MDESPISFLNERSFWNNGLDGVIKDHLLEHQSFLGWTCSTKAPIPPPSAD-FNAAVSSMHDCT-DLETGQIIDSPDC-------------------LPPS---------------------------------------------PILDDRFAVPAPYDPLPETKSRLRRYGHYLTKSNLPFRLRKATQSTLMRMLLLSDEPVVENGHTTRQWCLNLVVAVSALFLILSYEASMTAFLVQESIEARFETAADLLKCKIDPSEMCIVRGGALETYWKRSIAIDECHDQNPPTFFDSYQSLFDAVENRRCRYSLALESVVTTAIRERYCGYFVIVGQPLANGGLSMILPKGSSLTEPMSLVTLSLMRNRTISNLEKYLTNLPSCRADVNTTLNFHKLRIFFIIAFSVGGALFLAMVFIPQRTVSKNGT-RDVTITVECPEAKLES 411
            M E+PISF+N+R F NNG+DG + +++ E Q FLGW CS+       +   FNA +  MH+CT +  TG   +S  C                   LPP                                               +LD RFAV  PY PL    SR+RR  H+L K    +RLRKA QS++ R++L  D  VV+NG +TRQW LNLV+ + ALFL+LS+EASMTA LVQE I + +E+  D   CKI PS++C +RGGALE +W  +IA   CH+ NP  +  +Y+ ++D + + +C++S+ LESV+TT IR + CG  V++ +PL   GLSM++PKGS+LTE MS  T++L+ ++  S LE +L   P C   V +TL F KL++FFI+AFSV  A+   M+      V K+   R +  +V+   +K +S
Sbjct:    1 MHEAPISFINDRKFSNNGIDGAVSEYVSELQGFLGWRCSSVTLFQHQNTSGFNAFIEQMHECTTNQSTGVSSNSCPCDIGIGGWFQNQFRYGKVDFLPPFVHDRYRVATHVSNTDASGEMPFFLKTFDSLSWITIVALTCIFTLLKLLDSRFAVAEPYTPLSGV-SRIRRCLHFLWKHPRLYRLRKAGQSSVTRLMLQPDNEVVDNGKSTRQWFLNLVIGICALFLVLSFEASMTASLVQEKITSTYESPEDFRSCKIPPSDVCALRGGALEMFWNTNIATSNCHNGNPIQYLSTYEEIYDGLASGKCKFSICLESVITTQIRTQSCGQLVLLEEPLYTSGLSMVVPKGSNLTEAMSKATMTLLLSQPSSFLESFLRKWPKCTKKVASTLTFRKLKLFFILAFSVCAAILFVMLLGSLYPVKKSANKRAIGRSVDSKSSKTDS 442          
BLAST of Ggra9676.t1 vs. uniprot
Match: A0A2V3IME4 (Glutamate receptor 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IME4_9FLOR)

HSP 1 Score: 278 bits (710), Expect = 4.110e-85
Identity = 168/454 (37.00%), Postives = 232/454 (51.10%), Query Frame = 0
Query:   31 LRCCVMDESPISFLNERSFWNNGLDGVIKDHLLEHQSFLGWTCSTKAPIPP-PSADFNAAVSSMHDCTDLETGQIIDSPDC---------------------LPPS---------------------------------------------PILDDRFAVPAPYDPLPETKSRLRRYGHYLTKSNLPFRLRKATQSTLMRMLLLSDEPVVENGHTTRQWCLNLVVAVSALFLILSYEASMTAFLVQESIEARFETAADLLKCKIDPSEMCIVRGGALETYWKRSIAIDECHDQNPPTFFDSYQSLFDAVENRRCRYSLALESVVTTAIRERYCGYFVIVGQPLANGGLSMILPKGSSLTEPMSLVTLSLMRNRTISNLEKYLTNLPSCRADVNTTLNFHKLRIFFIIAFSVGGALFLAMVFIPQRTVSKNGTRDVTITVECPE-AKLESLRTVS 416
            LRCC++DE PI+F+++R++ N G+ G+I  +L E Q +L W+CS+           FN  V  M DC+  E G + + P C                     LPP                                                 D +F     ++ L ET  R++R+ H L K    +R R+A QST  RM+LL D  VVEN    RQW LN V++VS LFLILSYEASMTA LVQE++ A F++  D   C+I P+E+C+  GGALE +W  SIAI+ CH Q  P F  SY  LF AV+NR C+Y L LES    AI  +YCG  +   +P+ +GGL+M+LPK S+LT+ MS  TL +        +E+Y  ++P C  +  TTLNF KLR+FF IA   G  L L       R ++    + +   VE  E +KL  ++T+S
Sbjct:   37 LRCCILDEPPIAFIDDRTYANGGVSGIIAQYLREMQGYLNWSCSSVQHYTGGKQTSFNHFVRMMEDCS--ENGAVRNDPGCTCDIGISGWFQNHHRFRRVDFLPPFVTDGYEVVFHISNSEVSGRRMFFITTFDRLAWVSIFGLMLLFSAIKFFDRKFCPIDSFEALEETNPRIQRFVHVLMKYPTLYRFRRALQSTFSRMILLPDSDVVENQTANRQWVLNTVISVSGLFLILSYEASMTASLVQETVSAGFQSIQDFQTCRISPAEVCLPGGGALEMFWNTSIAIEVCHKQRQPFFASSYDELFHAVDNRTCKYGLLLESTANAAINSKYCGKLLAAEKPIYSGGLAMVLPKNSNLTDVMSYATLKITNEVATPGIEQYFASIPKCSINPETTLNFRKLRLFFGIALCTGAFLLLL------RIINNVWNQAIERRVEDKEQSKLRDIKTMS 482          
BLAST of Ggra9676.t1 vs. uniprot
Match: A0A2V3IMD4 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMD4_9FLOR)

HSP 1 Score: 240 bits (613), Expect = 4.780e-70
Identity = 153/422 (36.26%), Postives = 215/422 (50.95%), Query Frame = 0
Query:   31 LRCCVMDESPISFLNERSFWNNGLDGVIKDHLLEHQSFLGWTCSTKAPIPPPSAD-FNAAVSSMHDCTDLETGQIIDSPDC---------------------LPP--------------------SPIL----DDR--------------------FAVPAPYDPLPETKSRLRRYGHYLTKSNLPFRLRKATQSTLMRMLLLSDEPVVENGHTTRQWCLNLVVAVSALFLILSYEASMTAFLVQESIEARFETAADLLKCKIDPSEMCIVRGGALETYWKRSIAIDE-CHDQNPPTFFDSYQSLFDAVENRRCRYSLALESVVTTAIRERYCGYFVIVGQPLANGGLSMILPKGSSLTEPMSLVTLSLMRNRTISNLEKYLTNLPSCRADVNTTLNFHKLRIFFIIAFSVGGALFLAMVFI 385
            LRCC++ E PI+FLN+R++ N G+DG+I ++L + Q FL WTCS+       S   FN  ++ M  C+  E G I D P C                     LPP                    SP      D R                    F   A Y PL  T + +RR  H+L      +RLR + Q    RM+L+ +       + T  W L  VV +  LFLIL+YEASMTA +VQE++ + F++  D   C+IDP ++C+ RGG+ +TYW   +A +  CH    P    SY+ +F  VENR CR+ + LES V + I  +YCG  +  G P+  GGL+M+LPK S  TE MSL TL +    T+ +LE++ +   SC A++ T+L F KL++FFIIAF  G  LFL +V I
Sbjct:   37 LRCCIVYEPPIAFLNDRNYANLGIDGIIANYLNQMQGFLNWTCSSVQRYSDGSTTGFNNFITMMERCS--ENGTIKDDPHCKCDIGIGGWFTNSKRFGRVDFLPPFVYDSYQVIFHISDSKVSGRSPFFITTFDSRGWLCIFGLVLLFATIRMFSAFGDHARYQPLEPTVTPIRRIAHFLYNHPFFYRLRISIQRIFSRMILMPEPEDFSRPNNTFLWILKTVVTICGLFLILAYEASMTASIVQETVTSEFQSGKDFQTCRIDPKDVCLPRGGSFDTYWTEVLAKERPCHKGRSPHLMTSYEEVFQGVENRTCRFGILLESTVHSTIHRKYCGTILSNGNPIYTGGLAMVLPKDSMHTEVMSLATLKITDAATVPSLEEFYSTTGSCSAELATSLPFQKLQLFFIIAFCTG-FLFLTVVVI 455          
BLAST of Ggra9676.t1 vs. uniprot
Match: A0A2V3IUK7 (Glutamate receptor ionotropic, NMDA 2C n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUK7_9FLOR)

HSP 1 Score: 207 bits (528), Expect = 2.310e-58
Identity = 133/411 (32.36%), Postives = 202/411 (49.15%), Query Frame = 0
Query:   31 LRCCVMDESPISFLNERSFWNNGLDGVIKDHLLEHQSFLGWTCSTKAP-IPPPSADFNAAVSSMHDCTDLETGQIIDSPDC---------------------LPP---------------------------------------------SPILDDRFAVPAPYDPLPETKSRLRRYGHYL-TKSNLPFRLRKATQSTLMRMLLLSDEPVVENGHTTRQWCLNLVVAVSALFLILSYEASMTAFLVQESIEARFETAADLLKCKIDPSEMCIVRGGALETYWKRSIAIDECHDQNPPT--FFDSYQSLFDAVENRRCRYSLALESVVTTAIRERYCGYFVIVGQPLANGGLSMILPKGSSLTEPMSLVTLSLMRNRTISNLEKYLTNLPSCRADVNTTLNFHKLRIFFIIA 371
            LRCCV+ E PI +L+  ++ NNG++G+I  +L E Q+ L W CS   P +      FN  +  M +CT  + G I D P C                     LPP                                             +  LD+RFA P P    P   +   R  H+L T  N   RL  + +ST +R++L SD  +V+N H    + LNL++ +  L ++LSYEASMTA LVQE++ + +++  DL  C+I P ++C+  G A+ T+W  +IA  +CH ++     F  S++   DAV+N  C++ L L+S +  AI  +YCG  +  G+P+  GGLSMILPK S+LT+ M L TL L    +  +L++Y   +  C     + L F KL++ F+ A
Sbjct:   35 LRCCVIHEPPIVYLDPNTYSNNGINGIITKYLTEMQALLDWQCSEFIPYVEGDGTSFNRFIDMMDNCT--QNGAIKDDPACRCEIGIGGWFNSADRDERVDLLPPFVYDGIRVTFHVSNTRRSGSKLFFVTTFDLRSWLCLFAIIILFALAKFLDERFA-PIPSADEPNAANSWGRCLHFLRTNWN---RLITSIRSTTLRIVLQSDHDIVQNQHGAHNFNLNLIIGIFGLLVVLSYEASMTATLVQETVVSDYQSVEDLKTCRIKPEDVCVPGGSAVLTFWNDAIAYGDCHRESKGKNYFRGSFEETLDAVKNGTCKFGLVLDSTIQEAIHGKYCGQLLSSGEPIYTGGLSMILPKNSNLTKAMRLATLKLRNEASAPSLQQYFQTMSKCAPITGSVLTFEKLQLLFVFA 439          
BLAST of Ggra9676.t1 vs. uniprot
Match: R7Q656 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q656_CHOCR)

HSP 1 Score: 89.4 bits (220), Expect = 2.660e-18
Identity = 47/90 (52.22%), Postives = 63/90 (70.00%), Query Frame = 0
Query:  116 ILDDRFAVP-APYDPLPETKSRLRRYGHYLTKSNLPFRLRKATQSTLMRMLLLSDEPVVENGHTTRQWCLNLVVAVSALFLILSYEASMT 204
            +LD RF  P   Y PLP T SR+RR  HYL KS +P+RLRKA QST+ RM+       +E   ++RQW LNL++A+ +LFLIL+YE++MT
Sbjct:    1 MLDRRFVPPDESYQPLPRTSSRVRRMKHYLLKSRIPYRLRKALQSTMSRMVGQGGYDPIEGKTSSRQWVLNLLIALCSLFLILTYESAMT 90          
BLAST of Ggra9676.t1 vs. uniprot
Match: R7QE12 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QE12_CHOCR)

HSP 1 Score: 91.3 bits (225), Expect = 3.400e-18
Identity = 49/90 (54.44%), Postives = 63/90 (70.00%), Query Frame = 0
Query:  116 ILDDRFAVP-APYDPLPETKSRLRRYGHYLTKSNLPFRLRKATQSTLMRMLLLSDEPVVENGHTTRQWCLNLVVAVSALFLILSYEASMT 204
            +LD RF  P   Y PLP T SR+RR  HYL KS +P+RLRKA QSTL RM+       +E   ++RQW LNL++A+ +LFLIL+YEA+MT
Sbjct:   69 MLDRRFVPPDESYQPLPRTSSRVRRMKHYLLKSRIPYRLRKALQSTLSRMVGQGGYDPIEGKTSSRQWVLNLLIALCSLFLILTYEAAMT 158          
BLAST of Ggra9676.t1 vs. uniprot
Match: R7Q0P8 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q0P8_CHOCR)

HSP 1 Score: 90.9 bits (224), Expect = 5.890e-17
Identity = 49/90 (54.44%), Postives = 64/90 (71.11%), Query Frame = 0
Query:  116 ILDDRFAVPAP-YDPLPETKSRLRRYGHYLTKSNLPFRLRKATQSTLMRMLLLSDEPVVENGHTTRQWCLNLVVAVSALFLILSYEASMT 204
            +LD RF  P   Y PLP ++ RLRR  HYL KS +P+RLRKA QSTL RM+  S+   V +  ++RQW LNLV+A  +LF+IL+YE+SMT
Sbjct:  188 MLDRRFVPPDDSYTPLPASEPRLRRIRHYLLKSRIPYRLRKALQSTLSRMVGFSNSDPVTDKESSRQWVLNLVIACCSLFIILAYESSMT 277          
The following BLAST results are available for this feature:
BLAST of Ggra9676.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2V3IMD52.870e-9038.83Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IME44.110e-8537.00Glutamate receptor 1 n=1 Tax=Gracilariopsis chorda... [more]
A0A2V3IMD44.780e-7036.26Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IUK72.310e-5832.36Glutamate receptor ionotropic, NMDA 2C n=1 Tax=Gra... [more]
R7Q6562.660e-1852.22Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7QE123.400e-1854.44Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7Q0P85.890e-1754.44Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 387..429
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 366..386
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..365
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20
NoneNo IPR availableSUPERFAMILY53850Periplasmic binding protein-like IIcoord: 199..343
NoneNo IPR availableTMHMMTMhelixcoord: 364..386

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000107_piloncontigtig00000107_pilon:181800..183623 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9676.t1Ggra9676.t1Gracilaria gracilis GNS1m malemRNAtig00000107_pilon 181800..183623 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9676.t1 ID=Ggra9676.t1|Name=Ggra9676.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=430bp
MRHLLFFVSTSLALFDIVLAARNQLSTHPPLRCCVMDESPISFLNERSFW
NNGLDGVIKDHLLEHQSFLGWTCSTKAPIPPPSADFNAAVSSMHDCTDLE
TGQIIDSPDCLPPSPILDDRFAVPAPYDPLPETKSRLRRYGHYLTKSNLP
FRLRKATQSTLMRMLLLSDEPVVENGHTTRQWCLNLVVAVSALFLILSYE
ASMTAFLVQESIEARFETAADLLKCKIDPSEMCIVRGGALETYWKRSIAI
DECHDQNPPTFFDSYQSLFDAVENRRCRYSLALESVVTTAIRERYCGYFV
IVGQPLANGGLSMILPKGSSLTEPMSLVTLSLMRNRTISNLEKYLTNLPS
CRADVNTTLNFHKLRIFFIIAFSVGGALFLAMVFIPQRTVSKNGTRDVTI
TVECPEAKLESLRTVSTFSSEGGQDEGTA*
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