Ggra9675.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9675.t1
Unique NameGgra9675.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length263
Homology
BLAST of Ggra9675.t1 vs. uniprot
Match: R7QVA1 (Glycoside hydrolase family GH16 Endohydrolysis of (1-4)-beta-D-linkages of galactans n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QVA1_CHOCR)

HSP 1 Score: 191 bits (486), Expect = 2.360e-56
Identity = 107/258 (41.47%), Postives = 147/258 (56.98%), Query Frame = 0
Query:    3 WVKNNSMSDEFNAYPVSNWYYNNKWVRYNPFWEGRSPSFFSEQNVYVRDNCLWLQSTERPPSDEDRRKMGNRLNGHGWKYATSFIRTAEKGKYGYYEIACKFMDCNVSCAFWFINDRD---TEIDVFEYSTSPKPYDCHARCPVTFKNNFNMNTILYSGQNRDVEDSSPFKINVGRDLSQEIVKVGLLWKRDVLVWYLNDREVRRIRNDHFHIPLFLQLDSEVFQEWFGVPGAPARQGGPPEPKKLPNAWKVFYVRSY 257
            WV+N  MSDEF      +W    +W   NP W+GR+PSFF + NV V++  + L+S E  P         +        ++T+F+RT ++  YGY+EI C+ MD  +S AFWF  +     TE+DVFEYSTS KP          +K  FN N  ++   N  V+ SSP   + G DLS + VKVG  W+ D + WYLND+ VR  +N++FH PL LQLDSE F  WFG+P     + G      LPNA+++FYVRS+
Sbjct:   23 WVQNWEMSDEFERSLTDSWMRRQRWETINPTWKGRAPSFFKKDNVIVQNGSMKLRSREDNPPAYFPSMYKD--------FSTAFVRTRKRSLYGYFEIYCRMMDSKISSAFWFAYNTPNEWTELDVFEYSTSDKPTSFGK----PYKQLFNTNMHVHRNPN-GVKMSSPQVYDAGFDLSAQPVKVGFNWQEDKIQWYLNDKLVREEKNEYFHQPLHLQLDSEAFPIWFGLP-----ETGGCHKNSLPNAFEIFYVRSW 262          
BLAST of Ggra9675.t1 vs. uniprot
Match: A0A2V3ISL5 (Beta-porphyranase B n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISL5_9FLOR)

HSP 1 Score: 177 bits (448), Expect = 4.920e-51
Identity = 107/261 (41.00%), Postives = 147/261 (56.32%), Query Frame = 0
Query:    3 WVKNNSMSDEFNAYPVSN-WYYNNKWVRYNPFWEGRSPSFFSEQNVYVRDNCLWLQSTE--RPPSDEDRRKMGNRLNGHGWKYATSFIRTAEKGKYGYYEIACKFMDCNVSCAFWFINDRD---TEIDVFEYSTSPKPYDCHARCPVTFKNNFNMNTILYSGQNRDVEDSSPFKINVGRDLSQEIVKVGLLWKRDVLVWYLNDREVRRIRNDHFHIPLFLQLDSEVFQEWFGVPGAPARQGGPPEPKKLPNAWKVFYVRSY 257
            WV++  MSDEF   PV N W    +W   N  W GR PSFF ++NV V++  + L + E   PP         N   G+G K++T+F+RT +  +YGY+EI C   D  +S AFW   +     TEIDVFEYSTS K           FK  +NMN  ++   +  V+ + P   +  RDLSQE +K GL W+ D +VWYL+D  VRR +N  FH PL LQLDSE F  WFG+P     + G      LP+A++++YVR++
Sbjct:   23 WVQDWEMSDEFETVPVVNRWKRRYRWEIGNRRWLGRKPSFFKDENVEVKNGKMLLYAKEDTAPP---------NYPPGYG-KFSTAFVRTRKTRRYGYFEIYCHLRDSKISSAFWLTKNTPELWTEIDVFEYSTSDKINTSGRH----FKTLYNMNVHVHRHPH-GVKYNDPKIYDARRDLSQEPIKAGLDWREDEIVWYLDDVPVRRYKNRDFHQPLHLQLDSETFPNWFGLP-----ETGGSNRNNLPSAFEIYYVRTW 263          
BLAST of Ggra9675.t1 vs. uniprot
Match: A4C648 (Glycoside hydrolase, family 16 n=1 Tax=Pseudoalteromonas tunicata D2 TaxID=87626 RepID=A4C648_9GAMM)

HSP 1 Score: 99.8 bits (247), Expect = 2.350e-21
Identity = 74/255 (29.02%), Postives = 116/255 (45.49%), Query Frame = 0
Query:    9 MSDEFNAYPVSNWYYNNKWVRYNPFWEGRSPSFFSEQNVYVRDNCLWLQSTERPPSDEDRRKMGNRLNGHGWKYATSFIRTAEKGKYGYYEIACKFMDCNVSCAFWFINDRDT---EIDVFEY--STSPKPYDCHARCPVTFKNNFNMNTILYSGQNRDVEDSSPFKINVGRDLSQEIVKVGLLWKRDVLVWYLNDREVRRIRNDHFHIPLFLQLDSEVFQEWFGVPGAPARQGGPPEPKKLPNAWKVFYVRSYK 258
            +SDEFN   ++     NKW   +P W GR+P  F + NV + +  L L  T+               NG G    TSF RT EK KYGY+EI  K      S AF+  N   T   EID+ E   +++ K  + H+   V + +       L    NR + D   +  +    L+ +     + W    + WY +++ +RR +N H+H P+ + +D+E F  W G+P +            LP  +KV Y+R ++
Sbjct:   36 VSDEFNDDSINL----NKWQNIHPHWAGRAPGIFMQDNVNLVNGELVLSVTDES-------------NGKGTLIGTSFARTKEKVKYGYFEIRAKANRSRASSAFFLYNWTTTGTYEIDIVEIGGASTGKERNHHSNAHVYYGD-----PALEDDTNR-ISDPKTYVNDTA--LADDYHVYAVDWDELEIRWYFDNQLIRRKKNIHWHTPMQITIDTETFPSWLGMPRS----------SNLPAEFKVDYLRVWQ 255          
BLAST of Ggra9675.t1 vs. uniprot
Match: A0A244CUW9 (GH16 domain-containing protein n=3 Tax=Pseudoalteromonas ulvae TaxID=107327 RepID=A0A244CUW9_9GAMM)

HSP 1 Score: 95.9 bits (237), Expect = 4.660e-20
Identity = 71/262 (27.10%), Postives = 117/262 (44.66%), Query Frame = 0
Query:    2 RWVKNNSMSDEFNAYPVSNWYYNNKWVRYNPFWEGRSPSFFSEQNVYVRDNCLWLQSTERPPSDEDRRKMGNRLNGHGWKYATSFIRTAEKGKYGYYEIACKFMDCNVSCAFWFIN---DRDTEIDVFEY--STSPKPYDCHARCPVTFKNNFNMNTILYSGQNRDVEDSSPFKINVGRDLSQEIVKVGLLWKRDVLVWYLNDREVRRIRNDHFHIPLFLQLDSEVFQEWFGVPGAPARQGGPPEPKKLPNAWKVFYVRSYK 258
            +W     +SDEF++  +       KW  Y+P W GR P  F  QNV +R+N L L   +   S++                +TS IR   K KYGY+EI  K      S AF+  N   +   EID+ E   ++  K  + H+   + + +       L +  NR + DS  +  +    L+       + W    + WY +++ +RR +N H+H P+ + +D+E F  W G+P A          + LP  + V Y+R ++
Sbjct:   15 QWKYIPEVSDEFSSQTLDT----TKWQDYHPHWPGRPPGVFKSQNVSIRNNQLILAVKDESTSEQK-------------VISTSVIRARNKIKYGYFEIKAKANRSRASSAFFLYNWAPNATYEIDIVEIGGASDGKERNHHSNAHIYYGD-----PNLENNNNR-ISDSQTYVNDT--PLADNYHLYAVDWDDKEIRWYFDNQLIRRKKNIHWHTPMQINIDTETFPSWLGMPRA----------ENLPAEFIVEYIRVWQ 241          
BLAST of Ggra9675.t1 vs. uniprot
Match: A0A5B1BIN4 (T9SS type A sorting domain-containing protein n=2 Tax=Aquimarina sp. RZ0 TaxID=2607730 RepID=A0A5B1BIN4_9FLAO)

HSP 1 Score: 63.9 bits (154), Expect = 5.330e-8
Identity = 70/269 (26.02%), Postives = 113/269 (42.01%), Query Frame = 0
Query:    2 RWVKNNSMSDEFNAYPVSNWYYNNKWVRYNPFWEGRSPSFFSEQNVYVRDNCLWLQSTERPPSDEDRRKMGNRLNGHGWKYA-TSFIRTAEKGKYGYYEIACKFMDCNVSCAFWFINDRDTEIDVFEYSTSPKPYDCHARCPVTFKNNFNMNTILYS---GQNRDVEDSSPFKI--NVGRDLSQEIVKVGLLWKRDVLVWYLNDREVRRIRNDH-FHIPLFLQLDSEVFQEWFGVPGAPARQGGPPEPKKLPNAWKVFY--VRSYKMAS 261
            +W K N ++D+FN++  S      KW + +P+W GRSPS F+  N+  ++  L L+ + R           NR     W    TS  ++ +KG Y   E   K  D  +  +FW +   +TEIDV E     K              +  MNT  +    G + D      +K   NVG   +  +  V  +  R++  WY + R+V  +   + F+  +F+  D E F    G+P       G        N    +Y  VR+YK+ +
Sbjct:   34 KWQKVNQLTDDFNSFDSS------KWQKGHPYWSGRSPSQFNNNNLSWQNGNLRLKGSLR---------NSNRQGDFIWTACLTSKSKSFKKGMYA--EARIKNADMAIVSSFW-MQGSETEIDVIENWGEVKNNRWRH-----LDYSMEMNTHYFPKPCGFDCDKTTQKHYKNPGNVGNSSAYAVYGVWWVDSRNIR-WYRDGRQVASVTLPYDFNEDMFMFFDMEAFTWGPGLPSNADMNNG--------NKNTAYYDWVRTYKLVN 270          
BLAST of Ggra9675.t1 vs. uniprot
Match: A0A2W5P7V2 (GH16 domain-containing protein n=1 Tax=Sphingomonas taxi TaxID=1549858 RepID=A0A2W5P7V2_9SPHN)

HSP 1 Score: 60.5 bits (145), Expect = 4.690e-7
Identity = 62/200 (31.00%), Postives = 82/200 (41.00%), Query Frame = 0
Query:   78 HGWKYATSFIRTAEKG---KYGYYEIACKFMDCN-VSCAFWFI-----------NDRDTEIDVFEYSTSPKPYDCHARCPVTFKNNFNMNTILYSGQNRDVEDSSPFKINVGRDLSQEIVKVGLLWKRDVLVWYLNDREVRRIRNDHFHIPLFLQLDSEVFQEWFGVPGAPARQGGPPEPKKLPNAWKVFYVRSYKMASR 262
            H   Y +  I T EK     YGY E    F     +  AFW +               TEIDVFE    P       +   T+  N   N     G            +  G DLS      G+L   D LVWY +DREVRR+ N  +H PL+L L+  +   W   PGAPA     P P ++    ++ +VR Y++A R
Sbjct:  124 HALPYLSGLI-TTEKSFHFTYGYVEARVAFPSRKGIWPAFWLLPVPAMKDGQPQQPGPTEIDVFESIGEP------GKLYFTWFPNLPGNQKKGDG----------LAMQTGADLSA-FHTYGMLVTPDALVWYFDDREVRRVPNRDYHQPLYLLLNLAIGGTW---PGAPAADT--PWPARM----RIDWVRGYRLAGR 296          
BLAST of Ggra9675.t1 vs. uniprot
Match: glycoside hydrolase family 16 protein n=1 Tax=unclassified Flagellimonas TaxID=2644544 RepID=UPI0013D12699 (glycoside hydrolase family 16 protein n=1 Tax=unclassified Flagellimonas TaxID=2644544 RepID=UPI0013D12699)

HSP 1 Score: 58.5 bits (140), Expect = 1.610e-6
Identity = 58/219 (26.48%), Postives = 94/219 (42.92%), Query Frame = 0
Query:   45 QNVYVRDNCLWLQSTERPPSDEDRRKMGNRLNGHGWKYATSFIRTAEKGKYGYYEIACKFMDCNVSC-AFWFIND-RDTEIDV-FEYSTSPKPYDCHARCPVTFKNNFNMNTILYSGQNRDVEDSSPFKINVGRDLSQEIVKVGLLWKRDVLVWYLNDREVRRIRNDHFH--IPLFLQLDSEVFQEWFGVPGAPARQGGPPEPKKLPNAWKVFYVRSYK 258
            +NV V+D  L+L++ +               N  G ++ +  I T +K KYGY+E   K+     +  +FW +   +D +    FE   +   Y       V   +N   + I  SG+   + +   F      D S++    GL W  + +V+YL+ +E+RR++ND      P+FL L      EW+G     A  G          + KV YVR YK
Sbjct:   65 ENVEVKDGLLYLKNKKE--------------NRGGQEWTSGSIWTKKKFKYGYFECRYKYAAAETTNNSFWLMTKGKDPKKGKRFEIDINEGHYPNEVNTNV---HNHTDHVITKSGKKISIRNPEAFTYE-DIDFSKDFHVFGLTWDENGMVYYLDGKEIRRLKNDFCFGKTPIFLSL---ALVEWYGTL-TDAVDG---------TSMKVDYVRYYK 252          
BLAST of Ggra9675.t1 vs. uniprot
Match: A0A3A9VSD0 (T9SS C-terminal target domain-containing protein n=3 Tax=Aquimarina TaxID=290174 RepID=A0A3A9VSD0_9FLAO)

HSP 1 Score: 59.3 bits (142), Expect = 1.880e-6
Identity = 70/271 (25.83%), Postives = 110/271 (40.59%), Query Frame = 0
Query:    2 RWVKNNSMSDEFNAYPVSNWYYNNKWVRYNPFWEGRSPSFFSEQNVYVRDNCLWLQSTERPPSDEDRRKMGNRLNGHGWKYA-TSFIRTAEKGKYGYYEIACKFMDCNVSCAFWFINDRDTEIDVFEYSTSPKPYDCHARCPVTFKNNFNMNTILYSGQ-----NRDVEDSSPFKINVGRDLSQEIVKVGLLW--KRDVLVWYLNDREVRRIRNDH-FHIPLFLQLDSEVFQEWFGVPGAPARQGGPPEPKKLPNAWKVFY--VRSYKMAS 261
            +W   N ++D+FN++       +NKW + +P+W GRSPS F+  N+  ++  L L+ T R P         NR     W    TS  ++ +KG Y   E   K  D  +  +FW +    +EIDV E     K                 MNT  Y        ++     +    NVG   S E    G+ W   R++  WY +  +V  +   H F+  +++  D E F    G+P       G        N    FY  VR+Y++ +
Sbjct:   50 KWQAVNELTDDFNSFN------SNKWQKGHPYWAGRSPSQFNNNNLSWQNGNLRLKGTLRYP---------NRQGDFIWTACLTSKAKSFKKGMYA--EARIKNADMAIVSSFW-MQGNYSEIDVIENWGEVKNNQWRY-----LDYTMEMNTHYYPKPCGWPCDKKTPKHATNPGNVGN--SAEYAVYGVWWVDSRNIR-WYRDGVQVASVTLSHDFNEDMYMFFDMEAFTWGPGLPSNNDLNNG--------NKNTAFYDWVRTYRLVN 286          
BLAST of Ggra9675.t1 vs. uniprot
Match: A0A3A9YKQ7 (Beta-agarase n=3 Tax=Aquimarina TaxID=290174 RepID=A0A3A9YKQ7_9FLAO)

HSP 1 Score: 58.9 bits (141), Expect = 2.200e-6
Identity = 62/216 (28.70%), Postives = 93/216 (43.06%), Query Frame = 0
Query:    2 RWVKNNSMSDEFNAYPVSNWYYNNKWVRYNPFWEGRSPSFFSE--QNVYVRDNCLWLQSTERPPSDEDRRKMGNRLNGHGWKYATSFIRTAEKGKYGYY-EIACKFMDCNVSCAFWF----INDRDTEIDVFEYSTSPKPYDCHARCPVTFKN-------NFNMNTILYSGQ--NRDVEDSSPFKINVGRDLSQEIVKVGLLWKRDVLVWYLNDRE 201
            +WVK  +MSDEF+A+        NKW +    W    P F S   +N  V +  LW+++T    + E R           W + T+ I + EK  Y  Y E   K    +    +W     I+DRD EID+ E ++ P   +C    P T  +       N    TI   G   N ++ D++P K   G   ++E   VG+ WK +  V +  D E
Sbjct:  144 KWVKMETMSDEFDAWDA------NKWFKST--WNYGVPVFMSNSNENSGVTNGNLWIKATLNESNPEQR-----------W-FQTARIHSREKTSYPMYTEARIKTAHISAYNTYWLNNGDISDRD-EIDIIENNSKPS-CNCQPDFPTTMNSQYFHADSNLTPVTIRNKGNYSNNNLSDTNPLK---GIRWNEEYHIVGVWWKDNKNVQFYLDGE 334          
The following BLAST results are available for this feature:
BLAST of Ggra9675.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
R7QVA12.360e-5641.47Glycoside hydrolase family GH16 Endohydrolysis of ... [more]
A0A2V3ISL54.920e-5141.00Beta-porphyranase B n=1 Tax=Gracilariopsis chorda ... [more]
A4C6482.350e-2129.02Glycoside hydrolase, family 16 n=1 Tax=Pseudoalter... [more]
A0A244CUW94.660e-2027.10GH16 domain-containing protein n=3 Tax=Pseudoalter... [more]
A0A5B1BIN45.330e-826.02T9SS type A sorting domain-containing protein n=2 ... [more]
A0A2W5P7V24.690e-731.00GH16 domain-containing protein n=1 Tax=Sphingomona... [more]
glycoside hydrolase family 16 protein n=1 Tax=unclassified Flagellimonas TaxID=2644544 RepID=UPI0013D126991.610e-626.48glycoside hydrolase family 16 protein n=1 Tax=uncl... [more]
A0A3A9VSD01.880e-625.83T9SS C-terminal target domain-containing protein n... [more]
A0A3A9YKQ72.200e-628.70Beta-agarase n=3 Tax=Aquimarina TaxID=290174 RepID... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000757Glycoside hydrolase family 16PFAMPF00722Glyco_hydro_16coord: 44..209
e-value: 9.5E-7
score: 28.5
IPR000757Glycoside hydrolase family 16PROSITEPS51762GH16_2coord: 1..262
score: 13.655447
NoneNo IPR availableGENE3D2.60.120.200coord: 1..261
e-value: 6.6E-39
score: 136.0
IPR013320Concanavalin A-like lectin/glucanase domain superfamilySUPERFAMILY49899Concanavalin A-like lectins/glucanasescoord: 8..260

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000107_piloncontigtig00000107_pilon:177619..178407 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9675.t1Ggra9675.t1Gracilaria gracilis GNS1m malemRNAtig00000107_pilon 177619..178407 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9675.t1 ID=Ggra9675.t1|Name=Ggra9675.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=263bp
MRWVKNNSMSDEFNAYPVSNWYYNNKWVRYNPFWEGRSPSFFSEQNVYVR
DNCLWLQSTERPPSDEDRRKMGNRLNGHGWKYATSFIRTAEKGKYGYYEI
ACKFMDCNVSCAFWFINDRDTEIDVFEYSTSPKPYDCHARCPVTFKNNFN
MNTILYSGQNRDVEDSSPFKINVGRDLSQEIVKVGLLWKRDVLVWYLNDR
EVRRIRNDHFHIPLFLQLDSEVFQEWFGVPGAPARQGGPPEPKKLPNAWK
VFYVRSYKMASR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000757GH16
IPR013320ConA-like_dom_sf