Ggra9121.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9121.t1
Unique NameGgra9121.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length185
Homology
BLAST of Ggra9121.t1 vs. uniprot
Match: A0A2V3IIY3 (60S ribosome subunit biogenesis protein NIP7 homolog n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IIY3_9FLOR)

HSP 1 Score: 357 bits (916), Expect = 1.470e-124
Identity = 171/184 (92.93%), Postives = 181/184 (98.37%), Query Frame = 0
Query:    1 MRPLTEEETVQVFEKLAKFIGPNIKQLIDSPDETHCFRLQNDRVYYVSEKVMRLATNVARDNLASLGVCIGKFTHHKNFHVHVSCLDYLGKYARHKVWIKPSSEMSFLYGNHVLKAGLGRITENTENGAGVVVYNMSDTPIGFGLAARSTMDCRKAAPTDIVVLNQADLGMYLRSEERTPASAL 184
            MRPLTEEET QVFEKLAKFIG NIKQLID+P+ETHCFRLQNDRVYYVSE+VMRLATNVARDNLASLGVCIGKFTHHKNFH+H+SCL+YLGKYA+HKVWIKPSSEMSFLYGNHVLK GLGRITENT+NGAGVVVYNMSDTPIGFGLAARST+DCRKAAPTDIVVLNQADLGMYLRSEE+TPASAL
Sbjct:    1 MRPLTEEETTQVFEKLAKFIGTNIKQLIDAPEETHCFRLQNDRVYYVSERVMRLATNVARDNLASLGVCIGKFTHHKNFHIHISCLEYLGKYAKHKVWIKPSSEMSFLYGNHVLKTGLGRITENTDNGAGVVVYNMSDTPIGFGLAARSTIDCRKAAPTDIVVLNQADLGMYLRSEEKTPASAL 184          
BLAST of Ggra9121.t1 vs. uniprot
Match: R7QHT0 (60S ribosome subunit biogenesis protein NIP7 homolog n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHT0_CHOCR)

HSP 1 Score: 323 bits (828), Expect = 3.840e-111
Identity = 153/184 (83.15%), Postives = 172/184 (93.48%), Query Frame = 0
Query:    1 MRPLTEEETVQVFEKLAKFIGPNIKQLIDSPDETHCFRLQNDRVYYVSEKVMRLATNVARDNLASLGVCIGKFTHHKNFHVHVSCLDYLGKYARHKVWIKPSSEMSFLYGNHVLKAGLGRITENTENGAGVVVYNMSDTPIGFGLAARSTMDCRKAAPTDIVVLNQADLGMYLRSEERTPASAL 184
            MRPLTEEET QVFEKLAK+IGPN+K+LID+PD ++CFRLQ DRVYYVSE+ MRLAT+VARD+LASLGVC GKFTHHKNFH+H+SCL+YLGKYA HKVWIKPSSEMSFLYGNHVLK GLGRITENTE+GAGVVVYNM D  +GFGL ARST++CRKAAPTDIVVL+QADLGMYLRSE+ +PASAL
Sbjct:    1 MRPLTEEETTQVFEKLAKYIGPNLKKLIDTPDGSYCFRLQKDRVYYVSERTMRLATHVARDSLASLGVCFGKFTHHKNFHLHISCLEYLGKYATHKVWIKPSSEMSFLYGNHVLKTGLGRITENTEHGAGVVVYNMGDMALGFGLTARSTVECRKAAPTDIVVLHQADLGMYLRSEDSSPASAL 184          
BLAST of Ggra9121.t1 vs. uniprot
Match: LOW QUALITY PROTEIN: 60S ribosome subunit biogenesis protein nip7-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E0B23 (LOW QUALITY PROTEIN: 60S ribosome subunit biogenesis protein nip7-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E0B23)

HSP 1 Score: 309 bits (792), Expect = 8.620e-106
Identity = 144/174 (82.76%), Postives = 159/174 (91.38%), Query Frame = 0
Query:    1 MRPLTEEETVQVFEKLAKFIGPNIKQLIDSPDETHCFRLQNDRVYYVSEKVMRLATNVARDNLASLGVCIGKFTHHKNFHVHVSCLDYLGKYARHKVWIKPSSEMSFLYGNHVLKAGLGRITENTENGAGVVVYNMSDTPIGFGLAARSTMDCRKAAPTDIVVLNQADLGMYLR 174
            MRPLTE+ET +VFEKLAKFIGPN+KQL+D   E HCFRLQ DRVYYVSE+VMR ATNV RDNLASLGVC GKFTHHKNFH+H+SCLDYL +YA+HKVW+KPSSEMSFLYGNH+ KAGLGRITENT  G GVVVYNMSD P+GFGLAARST+DCRKAAPTDIVVL+QAD+GMYLR
Sbjct:    1 MRPLTEDETTKVFEKLAKFIGPNLKQLLDGAGEPHCFRLQKDRVYYVSEEVMRRATNVGRDNLASLGVCFGKFTHHKNFHLHISCLDYLARYAKHKVWVKPSSEMSFLYGNHIXKAGLGRITENTPQGTGVVVYNMSDMPMGFGLAARSTLDCRKAAPTDIVVLHQADMGMYLR 174          
BLAST of Ggra9121.t1 vs. uniprot
Match: A0A5J4Z3T1 (60S ribosome subunit biogenesis protein NIP7 homolog n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z3T1_PORPP)

HSP 1 Score: 266 bits (681), Expect = 9.240e-89
Identity = 128/184 (69.57%), Postives = 150/184 (81.52%), Query Frame = 0
Query:    1 MRPLTEEETVQVFEKLAKFIGPNIKQLIDSPDETHCFRLQNDRVYYVSEKVMRLATNVARDNLASLGVCIGKFTHHKNFHVHVSCLDYLGKYARHKVWIKPSSEMSFLYGNHVLKAGLGRITENTENGAGVVVYNMSDTPIGFGLAARSTMDCRKAAPTDIVVLNQADLGMYLRSEERTPASAL 184
            MRPLTEEET QVFEKLAK++G N+KQLID+  E  CFRLQ DRVYYV E VMR AT  AR  +A+LGVC+GKFTHH NFH+H++ L YL KYA++KVW+KPSSEMS++YGNHVLKAG+GR T+ T  G GVVVY+M D PIGFG+ ARST D RKA P DI+VLNQAD+G YLR E+  PASAL
Sbjct:    1 MRPLTEEETRQVFEKLAKYVGSNLKQLIDTGSEAWCFRLQKDRVYYVRENVMRHATTYARSKVAALGVCVGKFTHHSNFHLHITFLPYLAKYAKYKVWVKPSSEMSYMYGNHVLKAGVGRFTD-TPQGQGVVVYSMGDIPIGFGITARSTHDTRKANPMDIIVLNQADVGQYLRDEDSNPASAL 183          
BLAST of Ggra9121.t1 vs. uniprot
Match: A7SFI9 (60S ribosome subunit biogenesis protein NIP7 homolog n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7SFI9_NEMVE)

HSP 1 Score: 256 bits (655), Expect = 7.580e-85
Identity = 121/177 (68.36%), Postives = 144/177 (81.36%), Query Frame = 0
Query:    1 MRPLTEEETVQVFEKLAKFIGPNIKQLIDSPDETHCFRLQNDRVYYVSEKVMRLATNVARDNLASLGVCIGKFTHHKNFHVHVSCLDYLGKYARHKVWIKPSSEMSFLYGNHVLKAGLGRITENTENGAGVVVYNMSDTPIGFGLAARSTMDCRKAAPTDIVVLNQADLGMYLRSEE 177
            MRPLTEEET  VFEKLAK+IG NIK LID PD  +CFRL  DRVYYVSE +MR ATNVARDNL SLG C+GKFT  + F +H++ LD+L  YA++KVW+KP +E +FLYGNHV K+GLGRITENT    GVV+Y+MSD+P+GFG  ARST DCRKA PTD+VV +QAD+G YLRSE+
Sbjct:    1 MRPLTEEETKVVFEKLAKYIGENIKLLIDRPDGNYCFRLHKDRVYYVSELIMRRATNVARDNLISLGTCLGKFTKSEKFKLHITALDFLAPYAKYKVWVKPGAEQTFLYGNHVTKSGLGRITENTPQYQGVVIYSMSDSPLGFGATARSTQDCRKANPTDVVVFHQADVGEYLRSED 177          
BLAST of Ggra9121.t1 vs. uniprot
Match: A0A2B4S4V2 (60S ribosome subunit biogenesis protein NIP7 homolog n=3 Tax=Scleractinia TaxID=6125 RepID=A0A2B4S4V2_STYPI)

HSP 1 Score: 250 bits (639), Expect = 2.070e-82
Identity = 115/177 (64.97%), Postives = 143/177 (80.79%), Query Frame = 0
Query:    1 MRPLTEEETVQVFEKLAKFIGPNIKQLIDSPDETHCFRLQNDRVYYVSEKVMRLATNVARDNLASLGVCIGKFTHHKNFHVHVSCLDYLGKYARHKVWIKPSSEMSFLYGNHVLKAGLGRITENTENGAGVVVYNMSDTPIGFGLAARSTMDCRKAAPTDIVVLNQADLGMYLRSEE 177
            MRPLTEEET  VFEKLAK+IG NIK LID PD  +CFRL  DRVYYVSE+ MR ATNVAR+NL S+G CIGKFT  + F +H++ LD++  YA++K+W+KP+ E SFLYGNH+LK+GLGRITENT    GV+VY+M+D P+GFG  +RST DCR+A PTDI+  +QAD+G YLRSE+
Sbjct:    1 MRPLTEEETQIVFEKLAKYIGDNIKLLIDRPDGNYCFRLHEDRVYYVSEETMRKATNVARENLISIGTCIGKFTKTRKFRLHITALDFMAPYAKYKIWVKPAGEQSFLYGNHILKSGLGRITENTPQYQGVIVYSMNDLPLGFGATSRSTQDCRRANPTDIICFHQADVGEYLRSED 177          
BLAST of Ggra9121.t1 vs. uniprot
Match: NIP7 (60S ribosome subunit biogenesis protein NIP7 homolog n=15 Tax=Sarcopterygii TaxID=8287 RepID=NIP7_XENTR)

HSP 1 Score: 249 bits (635), Expect = 8.400e-82
Identity = 115/177 (64.97%), Postives = 143/177 (80.79%), Query Frame = 0
Query:    1 MRPLTEEETVQVFEKLAKFIGPNIKQLIDSPDETHCFRLQNDRVYYVSEKVMRLATNVARDNLASLGVCIGKFTHHKNFHVHVSCLDYLGKYARHKVWIKPSSEMSFLYGNHVLKAGLGRITENTENGAGVVVYNMSDTPIGFGLAARSTMDCRKAAPTDIVVLNQADLGMYLRSEE 177
            MRPLT+EET  +FEKL+K+IG NIK L+D PD T+CFRL NDRVYYVSE++++LATN+ARD L SLG C GKFT    F +HV+ LDYL  YA++KVW+KP +E SFLYGNHVLK+GLGRITENT    GVVVY+M+D P+GFG+AA+ST +CRK  P  IVV +QAD+G Y+R E+
Sbjct:    1 MRPLTDEETKAMFEKLSKYIGENIKLLVDRPDGTYCFRLHNDRVYYVSERILKLATNIARDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQECRKLDPMAIVVFHQADVGEYIRHED 177          
BLAST of Ggra9121.t1 vs. uniprot
Match: F6YGD8 (60S ribosome subunit biogenesis protein NIP7 homolog n=8 Tax=Metatheria TaxID=9263 RepID=F6YGD8_MONDO)

HSP 1 Score: 248 bits (633), Expect = 1.690e-81
Identity = 112/177 (63.28%), Postives = 143/177 (80.79%), Query Frame = 0
Query:    1 MRPLTEEETVQVFEKLAKFIGPNIKQLIDSPDETHCFRLQNDRVYYVSEKVMRLATNVARDNLASLGVCIGKFTHHKNFHVHVSCLDYLGKYARHKVWIKPSSEMSFLYGNHVLKAGLGRITENTENGAGVVVYNMSDTPIGFGLAARSTMDCRKAAPTDIVVLNQADLGMYLRSEE 177
            MRPLTEEET  +F+KL+K+IG NI+ L+D PD T+CFRL  DRVYYVSEK+++LA N++R+NL SLG C GKFT  + F +H++ LDYL  YA+HKVW+KP +E SFLYGNHVLK+GLGRITENT    G+VVY+M+D P+GFG+AA+ST DCRK  P  IVV +QAD+G Y+R E+
Sbjct:    1 MRPLTEEETRTLFQKLSKYIGENIQLLVDRPDGTYCFRLHKDRVYYVSEKILKLAVNISRENLVSLGTCFGKFTKTQKFRLHITALDYLAPYAKHKVWVKPGAEQSFLYGNHVLKSGLGRITENTNQYQGLVVYSMADVPLGFGVAAKSTQDCRKVDPMSIVVFHQADIGEYVRHED 177          
BLAST of Ggra9121.t1 vs. uniprot
Match: NIP7 (60S ribosome subunit biogenesis protein NIP7 homolog n=66 Tax=Gnathostomata TaxID=7776 RepID=NIP7_DANRE)

HSP 1 Score: 248 bits (632), Expect = 2.400e-81
Identity = 112/177 (63.28%), Postives = 145/177 (81.92%), Query Frame = 0
Query:    1 MRPLTEEETVQVFEKLAKFIGPNIKQLIDSPDETHCFRLQNDRVYYVSEKVMRLATNVARDNLASLGVCIGKFTHHKNFHVHVSCLDYLGKYARHKVWIKPSSEMSFLYGNHVLKAGLGRITENTENGAGVVVYNMSDTPIGFGLAARSTMDCRKAAPTDIVVLNQADLGMYLRSEE 177
            MRPLT+EET  +FEKL+K+IG NIK LID PD T+CFRL NDRVYY+SEK+++LATNV+RD L S+G C GKFT  + F +H++ LD+L  YA+ KVW+KP SE SFLYGNH++K+GLGRITENT+   GV+VY+M+D P+GFG+AAR+T +CRK  P  IVV +QAD+G Y+RSE+
Sbjct:    1 MRPLTDEETKTMFEKLSKYIGENIKLLIDRPDGTYCFRLHNDRVYYMSEKILKLATNVSRDKLVSVGTCFGKFTKTQKFRLHITALDFLAPYAKFKVWVKPGSEQSFLYGNHIMKSGLGRITENTDKYQGVLVYSMADVPLGFGVAARTTQECRKVDPMAIVVFHQADIGEYIRSED 177          
BLAST of Ggra9121.t1 vs. uniprot
Match: 60S ribosome subunit biogenesis protein NIP7 homolog n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A9257 (60S ribosome subunit biogenesis protein NIP7 homolog n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A9257)

HSP 1 Score: 248 bits (632), Expect = 2.400e-81
Identity = 115/177 (64.97%), Postives = 140/177 (79.10%), Query Frame = 0
Query:    1 MRPLTEEETVQVFEKLAKFIGPNIKQLIDSPDETHCFRLQNDRVYYVSEKVMRLATNVARDNLASLGVCIGKFTHHKNFHVHVSCLDYLGKYARHKVWIKPSSEMSFLYGNHVLKAGLGRITENTENGAGVVVYNMSDTPIGFGLAARSTMDCRKAAPTDIVVLNQADLGMYLRSEE 177
            MRPLTE+ET  VFEKLAK+IG N+K LID PD  +CFR  NDR YYVSE +MR ATN+ARDNL SLG C+GKFT    F +H++ LD+L  YA++K+W+KP +E ++LYGNH+ K+GLGRITENT    GVVVY+MSD P+GFG  ARST DCRKA PTD+V  +QAD+G YLRSEE
Sbjct:    1 MRPLTEDETKTVFEKLAKYIGENMKLLIDRPDGNYCFRYHNDRXYYVSEIIMRKATNIARDNLISLGSCLGKFTKGGKFKLHITALDFLAPYAKYKIWVKPGAEQTYLYGNHITKSGLGRITENTPQYQGVVVYSMSDVPLGFGATARSTQDCRKANPTDVVCFHQADIGEYLRSEE 177          
The following BLAST results are available for this feature:
BLAST of Ggra9121.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IIY31.470e-12492.9360S ribosome subunit biogenesis protein NIP7 homol... [more]
R7QHT03.840e-11183.1560S ribosome subunit biogenesis protein NIP7 homol... [more]
LOW QUALITY PROTEIN: 60S ribosome subunit biogenesis protein nip7-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E0B238.620e-10682.76LOW QUALITY PROTEIN: 60S ribosome subunit biogenes... [more]
A0A5J4Z3T19.240e-8969.5760S ribosome subunit biogenesis protein NIP7 homol... [more]
A7SFI97.580e-8568.3660S ribosome subunit biogenesis protein NIP7 homol... [more]
A0A2B4S4V22.070e-8264.9760S ribosome subunit biogenesis protein NIP7 homol... [more]
NIP78.400e-8264.9760S ribosome subunit biogenesis protein NIP7 homol... [more]
F6YGD81.690e-8163.2860S ribosome subunit biogenesis protein NIP7 homol... [more]
NIP72.400e-8163.2860S ribosome subunit biogenesis protein NIP7 homol... [more]
60S ribosome subunit biogenesis protein NIP7 homolog n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A92572.400e-8164.9760S ribosome subunit biogenesis protein NIP7 homol... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002478PUA domainSMARTSM00359pua_5coord: 95..170
e-value: 3.6E-13
score: 59.8
IPR016686Ribosome biogenesis factor, NIP7PIRSFPIRSF017190NIP7coord: 1..179
e-value: 5.5E-82
score: 271.5
IPR036974PUA domain superfamilyGENE3D2.30.130.10PUA domaincoord: 94..181
e-value: 2.6E-38
score: 131.8
IPR005155UPF0113, PUA domainPFAMPF03657UPF0113coord: 96..175
e-value: 2.7E-23
score: 82.0
IPR040598UPF0113, pre-PUA domainPFAMPF17833UPF0113_Ncoord: 2..83
e-value: 1.8E-29
score: 102.0
NoneNo IPR availableGENE3D3.10.450.220coord: 1..93
e-value: 1.8E-41
score: 142.1
NoneNo IPR availablePANTHERPTHR23415CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7coord: 1..178
NoneNo IPR availablePANTHERPTHR23415:SF460S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 HOMOLOGcoord: 1..178
NoneNo IPR availablePROSITEPS50890PUAcoord: 94..170
score: 14.251345
NoneNo IPR availableSUPERFAMILY88802Pre-PUA domaincoord: 1..94
IPR015947PUA-like superfamilySUPERFAMILY88697PUA domain-likecoord: 95..170

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:44942..45496 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9121.t1Ggra9121.t1Gracilaria gracilis GNS1m malemRNAtig00000075_pilon 44942..45496 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9121.t1 ID=Ggra9121.t1|Name=Ggra9121.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=185bp
MRPLTEEETVQVFEKLAKFIGPNIKQLIDSPDETHCFRLQNDRVYYVSEK
VMRLATNVARDNLASLGVCIGKFTHHKNFHVHVSCLDYLGKYARHKVWIK
PSSEMSFLYGNHVLKAGLGRITENTENGAGVVVYNMSDTPIGFGLAARST
MDCRKAAPTDIVVLNQADLGMYLRSEERTPASAL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002478PUA
IPR016686Ribosomal_synth_fac_NIP7
IPR036974PUA_sf
IPR005155UPF0113_PUA
IPR040598UPF0113_N
IPR015947PUA-like_sf