Ggra8860.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8860.t1
Unique NameGgra8860.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length378
Homology
BLAST of Ggra8860.t1 vs. uniprot
Match: A0A2V3J4L5 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4L5_9FLOR)

HSP 1 Score: 341 bits (875), Expect = 2.380e-112
Identity = 208/384 (54.17%), Postives = 266/384 (69.27%), Query Frame = 0
Query:    1 MKSPRPSPRVLVALALSLALLRHRKPIQRSFQHLVDMIRRTMNALQLTSNLVSETSNDLRAYLRPSATRRIQRGRRAPLSLSTRQVVIPAVPRSIRRVLRLLASEDGLAVMYNIAGGAARGLAREMHQPPSCNPVQGDVVQQVVETLASSSGQRLVNGAVSTAVREGMQTFLQFQRDCDSRAPDADWPQRVIDAALSERGQAFILKLTHELTRSVVPILMEGGSRAPGESSETLQEITTRTASPQVIPLVKRHMSFTN----QEHTQEESTPTKLNKESPVTRHLVKSVMQAQGRMGVIERLALLAIRDKELVREVVRTVVAEAVRTYLTTQAELRVYGTKS--GGSQE-VQQSLWKVLIRSAVVDIKRALLSRGEANSGWVIF 377
            M  P PSPR++  LA+++ALLRH K I  +   ++   R  +N  +    L ++TSND++ YL  S   RI R  R P     +QV  P++PRS+RR+LRLLASED L+V+ ++AGGAARGLAREM +   C  V  +  +QVVE LAS SGQR+VNGAV+TAVREG+QTF   Q+     A + D   R++DAALSERGQ  ++KL  ELT++VVPIL+   ++AP         + T TAS QV PL+KR +SF++    ++ +  E T +K  +ESPVTR LV SVMQAQGRMGVIERLALLAIRDK+LVREVVRTVV+EAVRTYL TQAEL      S  G SQ+ VQQSLWK LI+SA+VD KRALLSRG   +GW++F
Sbjct:    1 MHPPTPSPRLVATLAIAIALLRHSKSIHDTIHAMLHTARNALNTTRTALQLCAQTSNDMQLYLHSSTPCRISRAGRRP---QVKQVA-PSIPRSVRRLLRLLASEDALSVLNHVAGGAARGLAREMRRCSDCVSVSQNGFEQVVECLASPSGQRVVNGAVATAVREGIQTFCHMQQPTQPHA-NKDLATRLMDAALSERGQQLVVKLALELTQAVVPILVHA-NKAP--------TVGTYTASAQVTPLIKRQLSFSSRPPAEQRSAAEETGSKYVEESPVTRDLVMSVMQAQGRMGVIERLALLAIRDKQLVREVVRTVVSEAVRTYLRTQAELSGGAPSSAHGESQKGVQQSLWKALIQSAIVDAKRALLSRGADATGWLVF 370          
BLAST of Ggra8860.t1 vs. uniprot
Match: R7QQC9 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQC9_CHOCR)

HSP 1 Score: 213 bits (541), Expect = 5.820e-62
Identity = 153/408 (37.50%), Postives = 221/408 (54.17%), Query Frame = 0
Query:   19 ALLRHRKPIQRSFQHLVDMIRRTMNALQLTSNLVSETSNDLRAYLRPSATRRIQRGRRAPLSLSTRQVVIPAVPRSIRRVLRLLASEDGLAVMYNIAGGAARGLAREMHQPPS-CNPVQGDVV---------QQVVETLASSSGQRLVNGAVSTAVREGMQTFLQFQRDCDSRAPDA---DWPQRVIDAALSERGQAFILKLTHELTRSVVPILMEGGSRAPGESSETLQEITTRTASPQVIPLVKRHMSFTNQEHTQEESTPTKLNKESPVTRHLVKSVMQAQGRMGVIERLALLAIRDKELVREVVRTVVAEAVRTYLTTQAELRVYG----------------------------------TKSGGSQEVQQSLWKVLIRSAVVDIKRALLSRG--EANSGWVIF 377
            AL  +R+P     +       R  +A+ L S ++S+TS+D++ YL+P++ RR    R +  + S  QV     PRS+RR+L+L +S D LAV++ +AGG A+G+ RE+ +P +  N    + V           ++E LA+ +GQ +V   VSTAVREG+        D + R  D     WP+ V+    S++G+  ++ +   + R+VVP +M+  + AP E    +  +TT   SP   PL K+     +        T   L  ESP+++ LV SVMQAQG  G++ERLALLAIRDK LVREVVRTVV+EAVRTYLTTQA+LR  G                                  T+    Q    SLWK+LI+SAVVD+K+ALL R   E ++GW+IF
Sbjct:    3 ALYHNRQPFLTRLRAFARAFARAAHAVNLLSLVLSQTSSDVQQYLQPTSARR----RSSSSATSQAQV-----PRSLRRLLKLASSPDSLAVLHRLAGGVAQGVTRELQKPRNPANSFASEYVPDTHSPQYLHDLMEALAAPAGQAVVRNVVSTAVREGVDALA----DANDRRRDPCHRPWPEVVVAGLTSDKGRQLVVDVATNVARTVVPAVMQAQAAAPCE----IPSMTT--LSPAASPLRKKRPPSCSPA----ARTSFPLAGESPISKQLVMSVMQAQGGSGIVERLALLAIRDKALVREVVRTVVSEAVRTYLTTQAKLREEGVAVDAARAAAASAVSVAAPNAGKDARKPEPPTPETEDALEQRAGNSLWKLLIKSAVVDLKQALLDRAPREGSAGWLIF 387          
BLAST of Ggra8860.t1 vs. uniprot
Match: A0A7S1T4E3 (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T4E3_9RHOD)

HSP 1 Score: 80.5 bits (197), Expect = 5.480e-13
Identity = 90/342 (26.32%), Postives = 157/342 (45.91%), Query Frame = 0
Query:   20 LLRHRKPIQRSFQHLVDMIRRTMNALQLTSNLVSETSNDLRAYLRPS--ATRRIQRGRRAPLSLSTRQVVIP----------------AVPRSIRRVLRLLASEDGLAVMYNIAGGAARGLAREMHQPPSCNPVQGDVVQQVVET-----LASSSGQRLVNGAVSTAVREGMQTFLQFQR--DCDSRAPDADWPQRVID---AALSERGQAFILKLTHELTRSVVPILM--EGGSRAPGESSETLQEITTRTASPQVIPLVKRHMSFTNQEHTQEESTPTKLNKESPVTRHLVKSVMQAQGRMGVIERLALLAIRDKELVREVVRTVVAEAVRTYLTTQAEL 331
            LLR+R  +       +  + R++ A+ +  ++ S  S DL+ ++ PS  +T R  RGR A LS       +P                 VPRS+RR++++LAS + LAV+ +I+ G A+G  RE       N +      +   T     L +  G+++    VS AV+E + T L         S++PD    + + D   A LSE+G+  ++ L   +T + VPIL+  +G   AP             T    V+ L ++  SF      +   +P++   +         S          +E  ++L   D+ L+R+++R+VV+EAVR+Y+ T ++L
Sbjct:   38 LLRYRNRLSNLLYRSLRTMSRSLEAVDVLGDVFSAASRDLKRFVYPSDGSTSRA-RGRVAALSSDAIGPTLPPARLTTTPSRLMEESEGVPRSVRRLIKILASPECLAVLRSISAGIAQGAVREWSTGRP-NALSSGWSSESFSTRWLLALHTPPGEQVAQTLVSVAVKEALNTLLNRLNLGTNSSKSPDNPLSKFLGDIKAAGLSEQGRQVMIDLVSTITATAVPILLASKGAKCAP-------------TMENPVVSLKRQIQSF-----MKTADSPSRAGDDQKRRSDAHSSGGAPTWASMNVEIASIL--NDRALIRDILRSVVSEAVRSYVITNSQL 357          
The following BLAST results are available for this feature:
BLAST of Ggra8860.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3J4L52.380e-11254.17Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QQC95.820e-6237.50Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S1T4E35.480e-1326.32Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 21..24
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..377
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:551155..552288 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8860.t1Ggra8860.t1Gracilaria gracilis GNS1m malemRNAtig00000860_pilon 551155..552288 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8860.t1 ID=Ggra8860.t1|Name=Ggra8860.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=378bp
MKSPRPSPRVLVALALSLALLRHRKPIQRSFQHLVDMIRRTMNALQLTSN
LVSETSNDLRAYLRPSATRRIQRGRRAPLSLSTRQVVIPAVPRSIRRVLR
LLASEDGLAVMYNIAGGAARGLAREMHQPPSCNPVQGDVVQQVVETLASS
SGQRLVNGAVSTAVREGMQTFLQFQRDCDSRAPDADWPQRVIDAALSERG
QAFILKLTHELTRSVVPILMEGGSRAPGESSETLQEITTRTASPQVIPLV
KRHMSFTNQEHTQEESTPTKLNKESPVTRHLVKSVMQAQGRMGVIERLAL
LAIRDKELVREVVRTVVAEAVRTYLTTQAELRVYGTKSGGSQEVQQSLWK
VLIRSAVVDIKRALLSRGEANSGWVIF*
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