Ggra8858.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8858.t1
Unique NameGgra8858.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length262
Homology
BLAST of Ggra8858.t1 vs. uniprot
Match: A0A2V3J8B1 (E3 ubiquitin-protein ligase RNF13 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J8B1_9FLOR)

HSP 1 Score: 231 bits (590), Expect = 1.120e-72
Identity = 137/222 (61.71%), Postives = 160/222 (72.07%), Query Frame = 0
Query:   28 STRTSP----SQAPQRSVWIIVIXXXXXXXXXXXXXXXVRLMFRTRQLSVTPLEDTENGASARHADRERLVFAYLPAQAPAIVRMQRLAKKAGLSPQELDSVAPVSAYSRQASDPS-HLDANKSDDHVCAVCLEDMVDGSKTRRLPCGHWFDADCINVWATKANRCPVCNANIVDEEELERRRLGTFEAADHGTNQRRRRTRGENGTFQFAIVNEHNFLASD 244
            ST  SP        ++ VWII+ XXXXXXXXXXXXXXX       R+ S    E+ E    +R ADRERLVFAY P QAPAIVRMQRLAKKAGL P E+++VAPV+ Y +Q++  S  L  NK    VCAVCLEDM +GSKTRRLPCGHWFDADCI+VWATKANRCPVCN +I+ EEELE+RRLG FE  +H   QRRRRTRGENGTF+  +V E +  + D
Sbjct:   18 STNLSPVSREKSLEKKPVWIIICXXXXXXXXXXXXXXXXXXXXXMRRRSHPSHEEVEGDDPSRRADRERLVFAYFPTQAPAIVRMQRLAKKAGLLPTEINAVAPVTDYVKQSTSSSVDLTGNKGGYDVCAVCLEDMNEGSKTRRLPCGHWFDADCIDVWATKANRCPVCNTHIIGEEELEKRRLGVFETLEHNVRQRRRRTRGENGTFELGLVTESSVESED 239          
BLAST of Ggra8858.t1 vs. uniprot
Match: A0A0L0DCR1 (Esterase/lipase n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DCR1_THETB)

HSP 1 Score: 68.6 bits (166), Expect = 1.820e-9
Identity = 34/86 (39.53%), Postives = 45/86 (52.33%), Query Frame = 0
Query:  117 LSPQELDSVAPVSAYSRQASDPSHLDANKSDDHVCAVCLEDMVDGSKTRRLPCGHWFDADCINVWATKANRCPVCNANIVDEEELE 202
            LS + L+++AP S Y         L A+  D   C +CLED+VDG  +RRLPC H F ADCI  W  +   CP C   +    E +
Sbjct:  759 LSVRALEALAPASPYELP------LTADAPD--TCVICLEDLVDGEPSRRLPCSHVFHADCIAEWVARKAECPTCRGALSPPSESD 836          
BLAST of Ggra8858.t1 vs. uniprot
Match: A0A1X6P6W7 (RING-type domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P6W7_PORUM)

HSP 1 Score: 67.4 bits (163), Expect = 2.970e-9
Identity = 27/46 (58.70%), Postives = 30/46 (65.22%), Query Frame = 0
Query:  150 VCAVCLEDMVDGSKTRRLPCGHWFDADCINVWATKANRCPVCNANI 195
             CAVCL +  DG   RRLPC H + A CI  WA + NRCPVCNA I
Sbjct:  179 ACAVCLFEPEDGESVRRLPCNHLYHASCIETWAARNNRCPVCNAAI 224          
BLAST of Ggra8858.t1 vs. uniprot
Match: A0A7J7IHH4 (RING-type domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IHH4_9RHOD)

HSP 1 Score: 66.6 bits (161), Expect = 3.010e-9
Identity = 24/51 (47.06%), Postives = 36/51 (70.59%), Query Frame = 0
Query:  151 CAVCLEDMVDGSKTRRLPCGHWFDADCINVWATKANRCPVCNANIVDEEEL 201
            C++CL+ ++ G  +R+LPCGH F + CI+ W  +ANRCP+C   IV  EE+
Sbjct:  157 CSICLDPLMKGDMSRKLPCGHLFHSHCISKWVQRANRCPLCQHEIVPFEEV 207          
BLAST of Ggra8858.t1 vs. uniprot
Match: A0A1X6PHP3 (RING-type domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PHP3_PORUM)

HSP 1 Score: 63.9 bits (154), Expect = 1.160e-8
Identity = 28/53 (52.83%), Postives = 34/53 (64.15%), Query Frame = 0
Query:  150 VCAVCLEDMVDGSKTRRLP-CGHWFDADCINVWATKANRCPVCNANIVDEEEL 201
             CAVCLE M DG   R++P C H F   CI VWA++ NRCPVCN  I   +E+
Sbjct:  127 ACAVCLEAMADGHIVRQMPACAHLFHDACIAVWASRKNRCPVCNQAIAPVDEV 179          
BLAST of Ggra8858.t1 vs. uniprot
Match: A0A433QYW3 (RING-type domain-containing protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QYW3_9FUNG)

HSP 1 Score: 60.5 bits (145), Expect = 3.390e-8
Identity = 28/76 (36.84%), Postives = 43/76 (56.58%), Query Frame = 0
Query:  128 VSAYSRQASDPSHLDANKSDDHVCAVCLEDM-VDGSKTRRLPCGHWFDADCINVWATKANRCPVCNANIVDEEELE 202
            VS  S   + P+H+D +      C VC +   + GSK  ++PCGH+FD DCI  W    N CP+C A +  E++++
Sbjct:   30 VSIISFCLTPPTHMDES------CTVCKDVFHISGSKITKMPCGHFFDKDCIVPWLELHNTCPMCRAEVETEKKVK 99          
BLAST of Ggra8858.t1 vs. uniprot
Match: E3 ubiquitin-protein ligase RNF13 n=1 Tax=Contarinia nasturtii TaxID=265458 RepID=UPI0012D37393 (E3 ubiquitin-protein ligase RNF13 n=1 Tax=Contarinia nasturtii TaxID=265458 RepID=UPI0012D37393)

HSP 1 Score: 64.3 bits (155), Expect = 4.110e-8
Identity = 27/63 (42.86%), Postives = 37/63 (58.73%), Query Frame = 0
Query:  150 VCAVCLEDMVDGSKTRRLPCGHWFDADCINVWATKANR-CPVCNANIVDEEELERRRLGTFEA 211
            +CA+C+ED VDG + R LPC H +   CI+ W TK  R CP+C   +    E  RRR  T ++
Sbjct:  228 ICAICIEDYVDGDRLRVLPCSHAYHNKCIDPWLTKNRRVCPICKRKVFARGEPRRRRRSTDDS 290          
BLAST of Ggra8858.t1 vs. uniprot
Match: M1VC37 (Similar to ring finger protein n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1VC37_CYAM1)

HSP 1 Score: 63.2 bits (152), Expect = 5.110e-8
Identity = 29/76 (38.16%), Postives = 42/76 (55.26%), Query Frame = 0
Query:  151 CAVCLEDMVDGSKTRRLPCGHWFDADCINVWATKANRCPVCNANIVDEEELER----------RRLGTFEAADHGT 216
            C++CL+  + G  +R+L CGH F + CI+ W  +ANRCP+C   IV  EE+ +             GT + AD GT
Sbjct:  157 CSICLDPFMKGDMSRKLSCGHLFHSHCISKWVQRANRCPLCQHEIVRLEEVVQDLRQTQGGSGSSTGTAQDADTGT 232          
BLAST of Ggra8858.t1 vs. uniprot
Match: A0A7S3EHZ3 (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EHZ3_9RHOD)

HSP 1 Score: 63.2 bits (152), Expect = 6.070e-8
Identity = 21/46 (45.65%), Postives = 33/46 (71.74%), Query Frame = 0
Query:  150 VCAVCLEDMVDGSKTRRLPCGHWFDADCINVWATKANRCPVCNANI 195
            +CA+CL+D+VDG + R L C H + +DCI+ W  K+N CP+C  ++
Sbjct:  248 ICAICLDDIVDGDQCRELFCAHLYHSDCIDSWLKKSNECPLCKRSV 293          
BLAST of Ggra8858.t1 vs. uniprot
Match: A0A8J5R5U1 (Uncharacterized protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5R5U1_ZIZPA)

HSP 1 Score: 62.0 bits (149), Expect = 7.400e-8
Identity = 29/68 (42.65%), Postives = 38/68 (55.88%), Query Frame = 0
Query:  127 PVSAYSRQASDPSHLDANKSDDHVCAVCLEDMVDGSKTRRLP-CGHWFDADCINVWATKANRCPVCNA 193
            PV+AY +   + S     KS    CAVCL ++ DG K RRLP CGH F  +C++ W      CP+C A
Sbjct:  100 PVTAYRKGGGEGS-----KSGAADCAVCLSELADGDKVRRLPNCGHVFHVECVDAWLRSRTTCPLCRA 162          
The following BLAST results are available for this feature:
BLAST of Ggra8858.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J8B11.120e-7261.71E3 ubiquitin-protein ligase RNF13 n=1 Tax=Gracilar... [more]
A0A0L0DCR11.820e-939.53Esterase/lipase n=1 Tax=Thecamonas trahens ATCC 50... [more]
A0A1X6P6W72.970e-958.70RING-type domain-containing protein n=1 Tax=Porphy... [more]
A0A7J7IHH43.010e-947.06RING-type domain-containing protein n=1 Tax=Cyanid... [more]
A0A1X6PHP31.160e-852.83RING-type domain-containing protein n=1 Tax=Porphy... [more]
A0A433QYW33.390e-836.84RING-type domain-containing protein n=1 Tax=Jimger... [more]
E3 ubiquitin-protein ligase RNF13 n=1 Tax=Contarinia nasturtii TaxID=265458 RepID=UPI0012D373934.110e-842.86E3 ubiquitin-protein ligase RNF13 n=1 Tax=Contarin... [more]
M1VC375.110e-838.16Similar to ring finger protein n=1 Tax=Cyanidiosch... [more]
A0A7S3EHZ36.070e-845.65Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A8J5R5U17.400e-842.65Uncharacterized protein n=1 Tax=Zizania palustris ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 151..191
e-value: 3.3E-9
score: 46.6
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 150..192
e-value: 7.8E-12
score: 45.4
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 151..192
score: 12.120453
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 106..197
e-value: 7.7E-18
score: 65.9
NoneNo IPR availablePANTHERPTHR45798RING-H2 FINGER PROTEIN ATL61-RELATED-RELATEDcoord: 36..204
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 63..261
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 41..62
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..40
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 145..197
NoneNo IPR availableTMHMMTMhelixcoord: 40..62

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:546537..547410 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8858.t1Ggra8858.t1Gracilaria gracilis GNS1m malemRNAtig00000860_pilon 546537..547410 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8858.t1 ID=Ggra8858.t1|Name=Ggra8858.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=262bp
MLVPAWPGSVSSALTLVPDDLLSIVRQSTRTSPSQAPQRSVWIIVIVILA
ILVFVLITLLVVRLMFRTRQLSVTPLEDTENGASARHADRERLVFAYLPA
QAPAIVRMQRLAKKAGLSPQELDSVAPVSAYSRQASDPSHLDANKSDDHV
CAVCLEDMVDGSKTRRLPCGHWFDADCINVWATKANRCPVCNANIVDEEE
LERRRLGTFEAADHGTNQRRRRTRGENGTFQFAIVNEHNFLASDRNVSST
GTPRTVVNGNP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD