Ggra8855.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8855.t1
Unique NameGgra8855.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length231
Homology
BLAST of Ggra8855.t1 vs. uniprot
Match: R7QJQ7 (KH type-2 domain-containing protein n=2 Tax=Rhodymeniophycidae TaxID=2045261 RepID=R7QJQ7_CHOCR)

HSP 1 Score: 426 bits (1096), Expect = 1.780e-150
Identity = 219/230 (95.22%), Postives = 223/230 (96.96%), Query Frame = 0
Query:    1 MAAQISKKKKFVADGVLFAELNELLTRELAEEGYSGVEVRVTPSKTEVVIRATRTQSVLGEKGRRIRELTAVVQKRFAYPENSVELFVEKVANRGLCAIAQAESLRYKLVGGLAVRRACYGVLRFVMENGAKGCSVSVSGKLRAQRAKTMKFSDGYMISSGNPVKDYVDTAYRHVLLRQGVLGIKVMIMLPHDPTGKTGPQKPLPDVINVIEPKEEYTPPPAPITPVPVM 230
            MAAQISKKKKFVADGVL+AELNELLTRELAEEGYSGVEVRVTPSKTEVVIRATRTQ+VLGEKGRRIRELTAVVQKRFAYPENSVELFVEKVANRGLCAIAQAESLRYKLVGGLAVRRACYGVLRFVMENGAKGCSVSVSGKLRAQRAKTMKFSDGYMISSGNPVK YVDTAYRHVLLRQGVLGIKVMIMLPHDPTGKTGPQ+PLPD I V EPKEEY PPP P+ PVPVM
Sbjct:    1 MAAQISKKKKFVADGVLYAELNELLTRELAEEGYSGVEVRVTPSKTEVVIRATRTQAVLGEKGRRIRELTAVVQKRFAYPENSVELFVEKVANRGLCAIAQAESLRYKLVGGLAVRRACYGVLRFVMENGAKGCSVSVSGKLRAQRAKTMKFSDGYMISSGNPVKQYVDTAYRHVLLRQGVLGIKVMIMLPHDPTGKTGPQQPLPDTITVHEPKEEYVPPPPPVAPVPVM 230          
BLAST of Ggra8855.t1 vs. uniprot
Match: A0A4P9WN32 (30S ribosomal protein S3, chloroplastic n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9WN32_9FUNG)

HSP 1 Score: 360 bits (923), Expect = 5.600e-124
Identity = 179/221 (81.00%), Postives = 201/221 (90.95%), Query Frame = 0
Query:    1 MAAQISKKKKFVADGVLFAELNELLTRELAEEGYSGVEVRVTPSKTEVVIRATRTQSVLGEKGRRIRELTAVVQKRFAYPENSVELFVEKVANRGLCAIAQAESLRYKLVGGLAVRRACYGVLRFVMENGAKGCSVSVSGKLRAQRAKTMKFSDGYMISSGNPVKDYVDTAYRHVLLRQGVLGIKVMIMLPHDPTGKTGPQKPLPDVINVIEPKEEYTPPP 221
            MAAQISKK+KFVADGV FAELNE  TRELAEEGYSGVEVRVTP++TE++IRATRTQSVLGEKGRRIRELT+VVQKRF +PEN+VEL+ EKV NRGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MENGAKGC V VSGKLRA RAK+MKF DG+MI SG PV+D++DTA RHVLLRQGVLGIKV IML  DPTGK GP+KPLPD++ ++EPKE+ TP P
Sbjct:    1 MAAQISKKRKFVADGVFFAELNEFFTRELAEEGYSGVEVRVTPARTEIIIRATRTQSVLGEKGRRIRELTSVVQKRFNFPENTVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMENGAKGCEVVVSGKLRAARAKSMKFVDGFMIHSGQPVRDFLDTATRHVLLRQGVLGIKVKIMLETDPTGKAGPKKPLPDMVTILEPKEDETPAP 221          
BLAST of Ggra8855.t1 vs. uniprot
Match: I3SJI7 (KH type-2 domain-containing protein n=1 Tax=Lotus japonicus TaxID=34305 RepID=I3SJI7_LOTJA)

HSP 1 Score: 355 bits (912), Expect = 2.470e-122
Identity = 178/216 (82.41%), Postives = 196/216 (90.74%), Query Frame = 0
Query:    1 MAAQISKKKKFVADGVLFAELNELLTRELAEEGYSGVEVRVTPSKTEVVIRATRTQSVLGEKGRRIRELTAVVQKRFAYPENSVELFVEKVANRGLCAIAQAESLRYKLVGGLAVRRACYGVLRFVMENGAKGCSVSVSGKLRAQRAKTMKFSDGYMISSGNPVKDYVDTAYRHVLLRQGVLGIKVMIMLPHDPTGKTGPQKPLPDVINVIEPKEE 216
            MA QISKK+KFVADGV FAELNE+LTRELAE+GYSGVEVRVTP KTE++IRATRTQ+VLGEKGRRIRELT+VVQKRF +PENSVEL+ EKV NRGLCAIAQAESLRYKL+GGLAVRRACYGVLRFVME+GAKGC V VSGKLRAQRAK+MKF DGYMISSG PVKDY+D+A RHVLLRQGVLGIKV IML  DP GK GP+ PLPD++ +  PKEE
Sbjct:    1 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMKTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEE 216          
BLAST of Ggra8855.t1 vs. uniprot
Match: C6TG91 (KH type-2 domain-containing protein n=7 Tax=Fabaceae TaxID=3803 RepID=C6TG91_SOYBN)

HSP 1 Score: 354 bits (909), Expect = 6.830e-122
Identity = 180/224 (80.36%), Postives = 200/224 (89.29%), Query Frame = 0
Query:    1 MAAQISKKKKFVADGVLFAELNELLTRELAEEGYSGVEVRVTPSKTEVVIRATRTQSVLGEKGRRIRELTAVVQKRFAYPENSVELFVEKVANRGLCAIAQAESLRYKLVGGLAVRRACYGVLRFVMENGAKGCSVSVSGKLRAQRAKTMKFSDGYMISSGNPVKDYVDTAYRHVLLRQGVLGIKVMIMLPHDPTGKTGPQKPLPDVINVIEPKEE--YTPPPA 222
            MA Q+SKK+KFVADGV FAELNE+LTRELAE+GYSGVEVRVTP +TE++IRATRTQ+VLGEKGRRIRELT+VVQKRF +PENSVEL+ EKV NRGLCAIAQAESLRYKL+GGLAVRRACYGVLRFVME+GAKGC V VSGKLRAQRAK+MKF DGYMISSG PVKDY+D+A RHVLLRQGVLGIKV IML  DP GK GP+ PLPD++ +  PKEE  Y  PPA
Sbjct:    1 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHTPKEEEEYNRPPA 224          
BLAST of Ggra8855.t1 vs. uniprot
Match: G7KL44 (40S ribosomal S3-like protein n=2 Tax=Medicago truncatula TaxID=3880 RepID=G7KL44_MEDTR)

HSP 1 Score: 353 bits (907), Expect = 1.330e-121
Identity = 181/231 (78.35%), Postives = 203/231 (87.88%), Query Frame = 0
Query:    1 MAAQISKKKKFVADGVLFAELNELLTRELAEEGYSGVEVRVTPSKTEVVIRATRTQSVLGEKGRRIRELTAVVQKRFAYPENSVELFVEKVANRGLCAIAQAESLRYKLVGGLAVRRACYGVLRFVMENGAKGCSVSVSGKLRAQRAKTMKFSDGYMISSGNPVKDYVDTAYRHVLLRQGVLGIKVMIMLPHDPTGKTGPQKPLPDVINVIEPK--EEYTPPPAPITPVPV 229
            MA Q+SKK+KFVADGV FAELNE+LTRELAE+GY+GVEVRVTP +TE++IRATRTQ+VLGEKGRRIRELT+VVQKRF +PENSVEL+ EKV NRGLCAIAQAESLRYKL+GGLAVRRACYGVLRFVME+GAKGC V VSGKLRAQRAK+MKF   YMISSG PVKDYVD+A RHVLLRQGVLGIKV IML  DP GK GP+ PLPD++ +  PK  EEYT P A + P+PV
Sbjct:    1 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYAGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKQNYMISSGQPVKDYVDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKDEEEYTRPAAVVAPLPV 231          
BLAST of Ggra8855.t1 vs. uniprot
Match: V7C2P9 (KH type-2 domain-containing protein n=25 Tax=NPAAA clade TaxID=2231382 RepID=V7C2P9_PHAVU)

HSP 1 Score: 353 bits (906), Expect = 2.250e-121
Identity = 176/216 (81.48%), Postives = 196/216 (90.74%), Query Frame = 0
Query:    1 MAAQISKKKKFVADGVLFAELNELLTRELAEEGYSGVEVRVTPSKTEVVIRATRTQSVLGEKGRRIRELTAVVQKRFAYPENSVELFVEKVANRGLCAIAQAESLRYKLVGGLAVRRACYGVLRFVMENGAKGCSVSVSGKLRAQRAKTMKFSDGYMISSGNPVKDYVDTAYRHVLLRQGVLGIKVMIMLPHDPTGKTGPQKPLPDVINVIEPKEE 216
            MA Q+SKK+KFVADGV FAELNE+LTRELAE+GYSGVEVRVTP +TE++IRATRTQ+VLGEKGRRIRELT+VVQKRF +PENSVEL+ EKV NRGLCAIAQAESLRYKL+GGLAVRRACYGVLRFVME+GAKGC V VSGKLRAQRAK+MKF DGYMISSG PVKDY+D+A RHVLLRQGVLGIKV IML  DP GK GP+ PLPD++ +  PKEE
Sbjct:    1 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEE 216          
BLAST of Ggra8855.t1 vs. uniprot
Match: I1MQB5 (KH type-2 domain-containing protein n=10 Tax=indigoferoid/millettioid clade TaxID=2233855 RepID=I1MQB5_SOYBN)

HSP 1 Score: 353 bits (905), Expect = 2.680e-121
Identity = 176/216 (81.48%), Postives = 197/216 (91.20%), Query Frame = 0
Query:    1 MAAQISKKKKFVADGVLFAELNELLTRELAEEGYSGVEVRVTPSKTEVVIRATRTQSVLGEKGRRIRELTAVVQKRFAYPENSVELFVEKVANRGLCAIAQAESLRYKLVGGLAVRRACYGVLRFVMENGAKGCSVSVSGKLRAQRAKTMKFSDGYMISSGNPVKDYVDTAYRHVLLRQGVLGIKVMIMLPHDPTGKTGPQKPLPDVINVIEPKEE 216
            MA+Q+SKK+KFVADGV FAELNE+LTRELAE+GYSGVEVRVTP +TE++IRATRTQ+VLGEKGRRIRELT+VVQKRF +PENSVEL+ EKV NRGLCAIAQAESLRYKL+GGLAVRRACYGVLRFVME+GAKGC V VSGKLRAQRAK+MKF DGYMISSG PVKDY+D+A RHVLLRQGVLGIKV IML  DP GK GP+ PLPD++ +  PKEE
Sbjct:    1 MASQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHTPKEE 216          
BLAST of Ggra8855.t1 vs. uniprot
Match: A0A2G8JV19 (Putative 40S ribosomal protein S3 n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JV19_STIJA)

HSP 1 Score: 354 bits (908), Expect = 2.970e-121
Identity = 176/218 (80.73%), Postives = 198/218 (90.83%), Query Frame = 0
Query:    1 MAAQISKKKKFVADGVLFAELNELLTRELAEEGYSGVEVRVTPSKTEVVIRATRTQSVLGEKGRRIRELTAVVQKRFAYPENSVELFVEKVANRGLCAIAQAESLRYKLVGGLAVRRACYGVLRFVMENGAKGCSVSVSGKLRAQRAKTMKFSDGYMISSGNPVKDYVDTAYRHVLLRQGVLGIKVMIMLPHDPTGKTGPQKPLPDVINVIEPKEEYT 218
            MAAQISKK+KFVADGV  AELNE LTRELAE+GYSGVEVRVTP++TE++I ATRTQSVLGEKGRRIRELTAVVQKRF++PE SVEL+ EKVA RGLCAIAQ ESLRYKL+GGLAVRRACYGVLRF+ME+GAKGC V VSGKLR QRAK+MKF DG MI SGNPV+DYVDTA RHV+LRQGVLGIKV IMLP D TGK+GP+KPLPD ++++EPK+E T
Sbjct:    1 MAAQISKKRKFVADGVFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQSVLGEKGRRIRELTAVVQKRFSFPEGSVELYAEKVATRGLCAIAQCESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGNPVRDYVDTAIRHVMLRQGVLGIKVKIMLPFDQTGKSGPKKPLPDAVSIVEPKDEET 218          
BLAST of Ggra8855.t1 vs. uniprot
Match: I3S6J8 (KH type-2 domain-containing protein n=1 Tax=Lotus japonicus TaxID=34305 RepID=I3S6J8_LOTJA)

HSP 1 Score: 352 bits (904), Expect = 3.810e-121
Identity = 176/216 (81.48%), Postives = 195/216 (90.28%), Query Frame = 0
Query:    1 MAAQISKKKKFVADGVLFAELNELLTRELAEEGYSGVEVRVTPSKTEVVIRATRTQSVLGEKGRRIRELTAVVQKRFAYPENSVELFVEKVANRGLCAIAQAESLRYKLVGGLAVRRACYGVLRFVMENGAKGCSVSVSGKLRAQRAKTMKFSDGYMISSGNPVKDYVDTAYRHVLLRQGVLGIKVMIMLPHDPTGKTGPQKPLPDVINVIEPKEE 216
            MA Q+SKK+KFVADGV FAELNE+LTRELAE+GYSGVEVRVTP KTE++IRATRTQ+VLGEKGRRIRELT+VV KRF +PENSVEL+ EKV NRGLCAIAQAESLRYKL+GGLAVRRACYGVLRFVME+GAKGC V VSGKLRAQRAK+MKF DGYMISSG PVKDY+D+A RHVLLRQGVLGIKV IML  DP GK GP+ PLPD++ +  PKEE
Sbjct:    1 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVKTEIIIRATRTQAVLGEKGRRIRELTSVVSKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHSPKEE 216          
BLAST of Ggra8855.t1 vs. uniprot
Match: A0A0D2UG16 (KH type-2 domain-containing protein n=46 Tax=Mesangiospermae TaxID=1437183 RepID=A0A0D2UG16_GOSRA)

HSP 1 Score: 352 bits (904), Expect = 4.540e-121
Identity = 176/216 (81.48%), Postives = 197/216 (91.20%), Query Frame = 0
Query:    1 MAAQISKKKKFVADGVLFAELNELLTRELAEEGYSGVEVRVTPSKTEVVIRATRTQSVLGEKGRRIRELTAVVQKRFAYPENSVELFVEKVANRGLCAIAQAESLRYKLVGGLAVRRACYGVLRFVMENGAKGCSVSVSGKLRAQRAKTMKFSDGYMISSGNPVKDYVDTAYRHVLLRQGVLGIKVMIMLPHDPTGKTGPQKPLPDVINVIEPKEE 216
            MAAQISKK+KFVADGV +AELNE+LTRELAE+GYSGVEVRVTP +TE++IRATRTQ+VLGEKGRRIRELT+VVQKRF +PENSVEL+ EKV NRGLCAIAQAESLRYKL+GGLAVRRACYGVLRFVME+GAKGC V VSGKLRAQRAK+MKF DGYMISSG+PVK+Y+D+A RHVLLRQGVLGIKV IML  DP GK GP  PLPD++ +  PKEE
Sbjct:    1 MAAQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGHPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPMTPLPDLVTIHPPKEE 216          
The following BLAST results are available for this feature:
BLAST of Ggra8855.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7QJQ71.780e-15095.22KH type-2 domain-containing protein n=2 Tax=Rhodym... [more]
A0A4P9WN325.600e-12481.0030S ribosomal protein S3, chloroplastic n=1 Tax=Bl... [more]
I3SJI72.470e-12282.41KH type-2 domain-containing protein n=1 Tax=Lotus ... [more]
C6TG916.830e-12280.36KH type-2 domain-containing protein n=7 Tax=Fabace... [more]
G7KL441.330e-12178.3540S ribosomal S3-like protein n=2 Tax=Medicago tru... [more]
V7C2P92.250e-12181.48KH type-2 domain-containing protein n=25 Tax=NPAAA... [more]
I1MQB52.680e-12181.48KH type-2 domain-containing protein n=10 Tax=indig... [more]
A0A2G8JV192.970e-12180.73Putative 40S ribosomal protein S3 n=1 Tax=Stichopu... [more]
I3S6J83.810e-12181.48KH type-2 domain-containing protein n=1 Tax=Lotus ... [more]
A0A0D2UG164.540e-12181.48KH type-2 domain-containing protein n=46 Tax=Mesan... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004044K Homology domain, type 2PFAMPF07650KH_2coord: 20..94
e-value: 2.2E-13
score: 49.8
IPR004044K Homology domain, type 2PROSITEPS50823KH_TYPE_2coord: 21..92
score: 12.322123
IPR015946K homology domain-like, alpha/betaGENE3D3.30.300.20coord: 1..91
e-value: 1.1E-42
score: 145.9
IPR005703Ribosomal protein S3, eukaryotic/archaealTIGRFAMTIGR01008TIGR01008coord: 8..211
e-value: 3.3E-70
score: 233.8
IPR036419Ribosomal protein S3, C-terminal domain superfamilyGENE3D3.30.1140.32coord: 93..220
e-value: 2.8E-60
score: 203.9
IPR036419Ribosomal protein S3, C-terminal domain superfamilySUPERFAMILY54821Ribosomal protein S3 C-terminal domaincoord: 93..192
IPR001351Ribosomal protein S3, C-terminalPFAMPF00189Ribosomal_S3_Ccoord: 106..188
e-value: 7.2E-24
score: 84.1
NoneNo IPR availablePANTHERPTHR11760:SF51RIBOSOMAL PROTEIN S3, PUTATIVE-RELATEDcoord: 2..220
NoneNo IPR availablePANTHERPTHR1176030S/40S RIBOSOMAL PROTEIN S3coord: 2..220
NoneNo IPR availableCDDcd0241340S_S3_KHcoord: 15..95
e-value: 2.85666E-47
score: 148.91
IPR018280Ribosomal protein S3, conserved sitePROSITEPS00548RIBOSOMAL_S3coord: 147..183
IPR009019K homology domain superfamily, prokaryotic typeSUPERFAMILY54814Prokaryotic type KH domain (KH-domain type II)coord: 10..99

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:537933..538780 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8855.t1Ggra8855.t1Gracilaria gracilis GNS1m malemRNAtig00000860_pilon 537933..538780 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8855.t1 ID=Ggra8855.t1|Name=Ggra8855.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=231bp
MAAQISKKKKFVADGVLFAELNELLTRELAEEGYSGVEVRVTPSKTEVVI
RATRTQSVLGEKGRRIRELTAVVQKRFAYPENSVELFVEKVANRGLCAIA
QAESLRYKLVGGLAVRRACYGVLRFVMENGAKGCSVSVSGKLRAQRAKTM
KFSDGYMISSGNPVKDYVDTAYRHVLLRQGVLGIKVMIMLPHDPTGKTGP
QKPLPDVINVIEPKEEYTPPPAPITPVPVM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004044KH_dom_type_2
IPR015946KH_dom-like_a/b
IPR005703Ribosomal_S3_euk/arc
IPR036419Ribosomal_S3_C_sf
IPR001351Ribosomal_S3_C
IPR018280Ribosomal_S3_CS
IPR009019KH_sf_prok-type