Ggra8846.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8846.t1
Unique NameGgra8846.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length1234
Homology
BLAST of Ggra8846.t1 vs. uniprot
Match: A0A2V3IX35 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IX35_9FLOR)

HSP 1 Score: 1033 bits (2670), Expect = 0.000e+0
Identity = 539/1040 (51.83%), Postives = 685/1040 (65.87%), Query Frame = 0
Query:  162 HESPTHTANDSNADK---------PSPNNASASTYRGTSEMVVSEDSRPIAPVQLITSTATVPAHPKDTRRIWNRRTLERSGISSNALKALESFMKNVPPIPIQPDHNKRQTRNMRGWIQHLENPSCDSLWDKLMDVLQTDLSPQRAFGLHWDHDVCRFILGYVVSVNRSTQTRQAMNNAIKRELICPTESGNSTRGKTFRDLFREKCHKAGVKLNALENGAYPKRSSQAT----FSGRHAAVGPPDVPNRFISEFEDSSGTARTRPL-----PQLSLRRATEVRVSESELRKLRERCPDRDEWGQTAWWRLESNEDVERLPKLLVDHSLFELRNLLTDFRWMMRMFHCVNFSQGMYQAPAQAYDMMLRYAQSPSAHLPSADVESFRLIRNAIMVILPVLFRHEARSTDQGFHAHLATQLTGRLLSLKRKFPAIACLIQSIELHAPRPWLKPLTQCFRQPRTDVALAVPSEGIFVPHQLVLSDDGNFLVTTNVTTNASMREPRSKTKSEPTPRPASLHGNGKNSTTTQPTAPRKTISIAIWDISSGKRVGEVPNIHNHVSHVAITKDNNCIIGETYDGLFFWHFDKRETWTVRTSLKGLPRVRGLSSIKPTATPEHVLTTHKRGGRSVIVLWNTRTGAQEKVYDAVESKPNCVDIYSKRQYFASGHDNGFIHLWNWRDKRPILTFKNEGSEPGAQNGVSLSDANDEKDFSQSAQASARTISISFFERENDLSLASVS------SELGGVQQYIRIWVLPPKKFLDGSSQAFVSCKRAAVWKCRLVRQVFCSGDGNLFTGGDDGVARMWEREEDDTWKEYIIEKD--SNEDSKMSSTFICCGKKTKLIATYVTKSPYVVVWDTGNKDLRRTIMTRTGVYKPYIPIQAQSVDVADMNQYQTLKQEKGAGEFWAKCGEGGSSXXXXXXXXXXXKKLWDNPEFFFTQQTRDSNSVVRPGELQPWLQLKLEHGDMQGLDVCFDQPVTSGVTGLFVNAPNSFGGN---VGGGSEDGKRDGR-EVLQRQGMAIKLEDKRTELFEVEG 1171
            H SPTH+A ++ +D          P  N +S  ++  T        +    PV+      +V   P   RRIW RR L  SGIS   L AL+ FM ++P IPIQPDH+KR TRNMRGWIQ LENP CD +W  L  VL  D +P   F +HWDHD+CR+ILG VVS N++++TRQA+NNAIKREL+C +ESG STRGKTFRDLFREKCHKA V+L  LE+ A PKR+         S RH      D  N +     D S  +R RP      P ++         +E  LR+LRE CP +DEWG TAWW L+    +  LP LLVDH+L+ELRNLL DFRW+MR F  V+FS GM Q P + YD++LRYA S ++ LP  D+ESFRL+RNA+MVILPVL + +A   DQ FHAHLATQ+ GRLLSLKR+FP IA LIQS+ELHAP PWLKPLT+CF+QPRTD+ALAVPSEGIF PHQ+VLS DG FLVT NV+     ++P   +  E            +  T  +    RK +SI IWD+ SGK+VGEV  I +HV H+AIT+DNNCIIGET DGLFFWHF+  ETW ++   K  PR++GLSSIKPT  P+ VLTTHK     +I LW+T+TG++E++Y +V SKPNC+D+ SK ++FASGHDNGFIHLWNW+D +PILTF++EG+  G+Q  VSLS+AN ++D     Q +  TISISFFER+NDL LASVS      S++    + IRIW+LPP++ L    Q+FVSCKR AVW+   VR+V+ S DGNLFTGGDDGVARMWE+E+DDTWK+Y +EKD  S     M+S FI CGK+TK +ATYVTKSPYVVVWDT +K+L R IM RTG Y+PY P+   SVDV+DM + Q++K  K   +F A  G+ G+            + LW NP+ +F+    D   V R GELQPWL + +     + L VCFDQPV    +G FV      G      G   ED K + + +  +R+G+ +KLE+   E FE++G
Sbjct:  173 HNSPTHSAEEAWSDAQPNHSPDLHPQTNPSSTQSHTNTQSHPTQHQNHTPTPVR----QPSVHPSPSRERRIWTRRALSSSGISEKLLNALDIFMTDLPKIPIQPDHSKRPTRNMRGWIQQLENPQCDPIWAALTSVLLVDNTPTTVFAIHWDHDLCRYILGRVVSANQTSKTRQAINNAIKRELVCRSESG-STRGKTFRDLFREKCHKARVQLGPLEDKARPKRAPHLPPVYPLSTRHHTTAVTDATNPYPPPV-DGSSFSRARPAQSDYHPNMA--------HTEPRLRRLRESCPHKDEWGHTAWWTLQDENHIRLLPTLLVDHNLYELRNLLIDFRWIMRTFRSVDFSHGMPQTPTEGYDVILRYAASQNSRLPLVDIESFRLVRNALMVILPVLSQDQAHPVDQSFHAHLATQIVGRLLSLKRRFPTIASLIQSVELHAPTPWLKPLTRCFQQPRTDIALAVPSEGIFRPHQIVLSHDGRFLVTANVSIR---QDPVVSSSGEDLVMSGVFRNGSREPTAAKHQGVRKLVSITIWDVHSGKQVGEVGGIKSHVVHLAITRDNNCIIGETNDGLFFWHFETGETWRLKDVHKATPRLKGLSSIKPTTKPQLVLTTHKLEKEPLIALWDTQTGSRERMYSSVSSKPNCIDVSSKMEFFASGHDNGFIHLWNWKDDKPILTFRDEGTGKGSQQVVSLSEANSQRDPDGKGQVNTGTISISFFERDNDLLLASVSWNPADRSKIRKTPELIRIWLLPPRRILADDVQSFVSCKRTAVWQSPRVREVYWSTDGNLFTGGDDGVARMWEQEDDDTWKQYTMEKDVKSERPLNMASAFISCGKQTKFVATYVTKSPYVVVWDTTDKELCRKIMKRTGFYRPYFPLLWHSVDVSDMQELQSVKSSKNVNDF-ADYGKVGTDAVVESRHEKGSRTLWQNPKLYFSSP--DEKGVKRLGELQPWLTMAVGAAGKEDLRVCFDQPVRHCYSGTFVIDKGGAGLQDITSGVDPEDDKNEAKGKQAERRGIVVKLENGCVEFFELQG 1192          
BLAST of Ggra8846.t1 vs. uniprot
Match: R7QKS7 (WD40-repeat containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QKS7_CHOCR)

HSP 1 Score: 572 bits (1475), Expect = 1.190e-182
Identity = 371/968 (38.33%), Postives = 522/968 (53.93%), Query Frame = 0
Query:  261 KRQTRNMRGWIQHLENPSCDSLWDKLMDVLQTDLSPQRAFGLHWDHDVCRFILGYVVSVNRSTQTRQAMNNAIKRELICPTESGNSTRGKTFRDLFREKCHKAGVKLNALEN----GAYPKRSSQATF------------------SGR----HAA--VGPPDVPNRFISEFEDSSGTARTRPLPQLSLRRATEVRVSESELRKLRERCPDRDEWGQTAWWRLESNEDVERLPKLLV-DHS-LFELRNLLTDFRWMMRMFHCVNFSQGMYQAPAQAYDMMLRYAQSPSAHLPSADVESFRLIRNAIMVILPVLFRHE-ARSTDQGFHAHLATQLTGRLLSLKRKFPAIACLIQSIELHAPRPWLKPLTQCFRQPRTDVALAVPSEGIFVPHQLVLSDDGNFLVTTNVTTNASMREPRSKTKSEPTPRPASLHGNGKNSTTTQPTAPRKTISIAIWDISSGKRVGEVPNIHNHVSHVAITKDNNCIIGETYDGLFFWHFDK-RETWTVRTSLKGLPRVRGLSSIKPTATPEHVLTTHKRGG-----RSVIVLWNTRTGAQEKVYDAVESKPNCVDIYSKRQYFASGHDNGFIHLWNWR--DKRPILTFKNEGS--EPGAQNGVSLSDANDEKDFSQSAQASARTISISFFERENDLSLASVSSELGGVQQYIRIWVLPPKKFLDGSSQAFVSCKRAAVWKCRLVRQVFCSGDGNLFTGGDDGVARMW-EREEDDTWKEYIIEKDSNED-SKMSSTFICCGKKTKLIATYVTKSPYVVVWDTGNKDLRRT--IMTRTGVYKPYIPIQAQSVDVADMNQYQTLKQEKGAGEFWAKCGEGGSSXXXXXXXXXXXKKLWDNPEFFFTQQTRDSNSVVRPGELQPWLQLKLEHGDMQGLDVCFDQPVTSGVTGLFVNAPNSFGGNVG-----------GGSEDGKRDGREVLQRQGMAIKLEDKRTELFEVEGG 1172
            K  TRNMR WI  L++P   +LW  L+  L+ D +P+ A+G  WD   CRF+LG +++ +   Q+RQA+NNAIKREL  P ES +S++ KTFRDLFRE+C    V+L  LE     G  P  SS A+                   SG     +AA  VGP   P+      +    + +  PLP  +      V   +  L + R+ C   DEWG+TAWW L  N D+ +LP  L  D++ LFELRNLL DFRW+ R F C + S+ M+Q    +YD++L   ++    LP+ +VE+FRLIRNA+ +I P+L         D  F AHLATQL GRLLSLK +FP IACLIQSIELHAP+PWL+PL  CF++P TD+ +AVPS G   PH + LS DG  L  +      S+   + +T+ +P    +S     K  T  + TA RK  SI IWD+ +G+ V  V  I N V  +AIT D++C+I ET DGLFFW  +K  + +    +++  PR   ++S+ PT     +LTT + GG        I LWNT TG + + +D V S+  C D+    +YFASGH+NG+IHLW     +  P+L+FKNEG+  E G Q+ V+L   N  +     +  + +TIS+SF+ +E    LA+VS+      + IR+W LPP   +    ++FV+  R AV +C  VRQV  S  G  F+ GDDG+ARMW +REE   W ++ + +   E  S +SS  +  G+ TKL+ATYVTKSPYV VWD    D      +  R  +Y+ Y+ +   S D  D+     L++        +  G GG             +K +   +          N+    GE+ P L++K E    +GL+VCF+QPV  GV+G F       GG +G            G   G+R G     R+GM   L+D    +FE+EGG
Sbjct:    8 KTPTRNMRMWITDLDSPQHAALWKPLVGALRDDRTPEAAWGPAWDRIFCRFMLGKLITDDN--QSRQAVNNAIKRELDTPVESRSSSKSKTFRDLFREQCRAGRVQLPKLEQPPLPGPVPYPSSAASRQTPIAPSLHLPHIAPAAESGEPHSLYAASPVGPRAYPDMTYINLKKRRLSDQRTPLPTSN----AVVLPLQDALLRYRDSCRT-DEWGRTAWWNLAIN-DINKLPLWLAHDYTYLFELRNLLLDFRWIRRTFECAD-SETMHQVSTSSYDLLLDIPKTDPGRLPAIEVEAFRLIRNALKLITPILASDSIVNPKDDTFIAHLATQLVGRLLSLKTRFPLIACLIQSIELHAPKPWLRPLNPCFQEPGTDIKMAVPSNGTLTPHLIALSPDGALLAVSGTRKVPSVISAK-ETERKPYTSLSSTVKKLKAITEGRSTA-RKVSSICIWDVETGRLVCRVERIENLVRCLAITPDHSCVIAETVDGLFFWKLEKLSDGYRAGKAVEATPRPNPVTSMMPTVRTRELLTTSRSGGDESMHTGTIALWNTDTGERVRTFDCVTSQATCTDVSLDGEYFASGHNNGYIHLWTLHGSETEPVLSFKNEGAVAENGQQH-VALDKVNRTR-----SNGTLKTISLSFYGKEEQRWLAAVSAN-----EIIRVWELPPGSIIRKGKESFVTTIRRAVLRCPRVRQVQWSKCGWFFSAGDDGIARMWMQREEGGRWVDHALGRKKRERASDISSVLVSSGRGTKLVATYVTKSPYVTVWDLSGFDGGNASQVARRQRLYRSYMCMVPDSEDARDIEHLTALRKTSTGVSGKSGVGNGGLEGMADAEIRRELEKRFHKLDI--------KNATKLVGEMHPRLKMKPEEW-RRGLEVCFEQPVIVGVSGTFRRGEREDGGKIGVDPAAVHAAGIPGELAGERGGEYEEGRRGMVAALQDGAIAMFELEGG 944          
The following BLAST results are available for this feature:
BLAST of Ggra8846.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IX350.000e+051.83Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QKS71.190e-18238.33WD40-repeat containing protein n=1 Tax=Chondrus cr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 910..946
e-value: 4.8
score: 12.7
coord: 779..818
e-value: 0.09
score: 21.9
coord: 688..726
e-value: 240.0
score: 2.0
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 676..1031
e-value: 2.9E-19
score: 70.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 132..191
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 638..674
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 44..105
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..105
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 652..674
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 159..191
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..40
IPR011047Quinoprotein alcohol dehydrogenase-like superfamilySUPERFAMILY50998Quinoprotein alcohol dehydrogenase-likecoord: 615..1010

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:495998..499699 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8846.t1Ggra8846.t1Gracilaria gracilis GNS1m malemRNAtig00000860_pilon 495998..499699 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8846.t1 ID=Ggra8846.t1|Name=Ggra8846.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=1234bp
MRPPRTAALNPSSPLGELRSPPQPSPPDPQPRPIPLPGNIPSDTPSAHMA
TTLSSSPSVPNQTSLHLNCIAPTQRPNTPNGVQDGPPSKRRRTSTEQSLA
TPLTLPPSVQMNDLPARIVPLSQAAPLANAQPNTALPIAPEKLPTRGEEG
WSDAQTPARAVHESPTHTANDSNADKPSPNNASASTYRGTSEMVVSEDSR
PIAPVQLITSTATVPAHPKDTRRIWNRRTLERSGISSNALKALESFMKNV
PPIPIQPDHNKRQTRNMRGWIQHLENPSCDSLWDKLMDVLQTDLSPQRAF
GLHWDHDVCRFILGYVVSVNRSTQTRQAMNNAIKRELICPTESGNSTRGK
TFRDLFREKCHKAGVKLNALENGAYPKRSSQATFSGRHAAVGPPDVPNRF
ISEFEDSSGTARTRPLPQLSLRRATEVRVSESELRKLRERCPDRDEWGQT
AWWRLESNEDVERLPKLLVDHSLFELRNLLTDFRWMMRMFHCVNFSQGMY
QAPAQAYDMMLRYAQSPSAHLPSADVESFRLIRNAIMVILPVLFRHEARS
TDQGFHAHLATQLTGRLLSLKRKFPAIACLIQSIELHAPRPWLKPLTQCF
RQPRTDVALAVPSEGIFVPHQLVLSDDGNFLVTTNVTTNASMREPRSKTK
SEPTPRPASLHGNGKNSTTTQPTAPRKTISIAIWDISSGKRVGEVPNIHN
HVSHVAITKDNNCIIGETYDGLFFWHFDKRETWTVRTSLKGLPRVRGLSS
IKPTATPEHVLTTHKRGGRSVIVLWNTRTGAQEKVYDAVESKPNCVDIYS
KRQYFASGHDNGFIHLWNWRDKRPILTFKNEGSEPGAQNGVSLSDANDEK
DFSQSAQASARTISISFFERENDLSLASVSSELGGVQQYIRIWVLPPKKF
LDGSSQAFVSCKRAAVWKCRLVRQVFCSGDGNLFTGGDDGVARMWEREED
DTWKEYIIEKDSNEDSKMSSTFICCGKKTKLIATYVTKSPYVVVWDTGNK
DLRRTIMTRTGVYKPYIPIQAQSVDVADMNQYQTLKQEKGAGEFWAKCGE
GGSSGQGGSKHQQGSKKLWDNPEFFFTQQTRDSNSVVRPGELQPWLQLKL
EHGDMQGLDVCFDQPVTSGVTGLFVNAPNSFGGNVGGGSEDGKRDGREVL
QRQGMAIKLEDKRTELFEVEGGVRVGAVASGVESSEGKKVGEKGGSKVVV
SCAKVSANEKESAGKVKEVANAATAAGDVSSVT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR011047Quinoprotein_ADH-like_supfam