Ggra8827.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8827.t1
Unique NameGgra8827.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length249
Homology
BLAST of Ggra8827.t1 vs. uniprot
Match: A0A2V3ICY5 (DNA topoisomerase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ICY5_9FLOR)

HSP 1 Score: 159 bits (401), Expect = 3.140e-41
Identity = 77/109 (70.64%), Postives = 89/109 (81.65%), Query Frame = 0
Query:  110 TPFQHDRMQAMCDRLDLQNGKVISVLNRNMLRHPPTPIITSTLQQEYGNQFGFGARRTMRTPQKLYENGLITYMRTDNAQLSDQAMDSCRKAVQRLYGEDMLRDQYTKT 218
            T F HDRM A+C+RLD  N  V SV +R   RHPPTP+ITSTLQQE GN+FGFGA RTMR  QKLYENGLITYMRTDN +LSDQA+ SCR+AVQ++YG+D+LRDQ T T
Sbjct:  303 TRFDHDRMTALCERLDCHNATVKSVEHRETSRHPPTPLITSTLQQECGNRFGFGAGRTMRIAQKLYENGLITYMRTDNPKLSDQAVASCREAVQQIYGKDVLRDQNTVT 411          
BLAST of Ggra8827.t1 vs. uniprot
Match: A0A2H3NWV0 (DNA topoisomerase 1 n=1 Tax=Longimonas halophila TaxID=1469170 RepID=A0A2H3NWV0_9BACT)

HSP 1 Score: 101 bits (251), Expect = 9.590e-21
Identity = 52/116 (44.83%), Postives = 68/116 (58.62%), Query Frame = 0
Query:   98 RVNPDLVETAPLTPFQHDRMQAMCDRLDLQNGKVISVLNRNMLRHPPTPIITSTLQQEYGNQFGFGARRTMRTPQKLYENGLITYMRTDNAQLSDQAMDSCRKAVQRLYGEDMLRD 213
            R+  DL E   +     D+  A+ D L  +  +V  V  R   ++PP P ITSTLQQE   + GF A RTMR  QKLYENG ITYMRTD+  LS +A+ + R +++  YG D L D
Sbjct:  241 RLKDDLEEGKDVLLLSEDQATALADTLPTEPWRVADVKTRTRTKNPPPPFITSTLQQEASRKLGFTANRTMRVAQKLYENGHITYMRTDSKNLSKEAIAASRSSIETRYGSDYLSD 356          
BLAST of Ggra8827.t1 vs. uniprot
Match: A0A2E1Q7P8 (DNA topoisomerase 1 n=2 Tax=Bdellovibrionales TaxID=213481 RepID=A0A2E1Q7P8_9PROT)

HSP 1 Score: 96.7 bits (239), Expect = 3.740e-19
Identity = 52/109 (47.71%), Postives = 68/109 (62.39%), Query Frame = 0
Query:  115 DRMQAMCDRLDLQNGKVISVLNRNMLRHPPTPIITSTLQQEYGNQFGFGARRTMRTPQKLYENGLITYMRTDNAQLSDQAMDSCRKAVQRLYGEDMLRDQ---YTKTPI 220
            D   A   +L+ Q+ KV  V  + + R P  P ITSTLQQE   + G  +R TM+  QKLYENG ITYMRTD+  LS QA+D  R A+++L+G+D L DQ   YTK  +
Sbjct:  258 DLASAWKGKLEGQSWKVKEVEEKPVSRKPAPPFITSTLQQEANRKLGMSSRETMQVAQKLYENGHITYMRTDSTNLSQQAIDGARAAIKQLFGKDYLPDQPRLYTKKKV 366          
BLAST of Ggra8827.t1 vs. uniprot
Match: type I DNA topoisomerase n=1 Tax=Nakamurella flavida TaxID=363630 RepID=UPI001965F950 (type I DNA topoisomerase n=1 Tax=Nakamurella flavida TaxID=363630 RepID=UPI001965F950)

HSP 1 Score: 96.3 bits (238), Expect = 5.170e-19
Identity = 50/106 (47.17%), Postives = 67/106 (63.21%), Query Frame = 0
Query:  115 DRMQAMCDRLDLQNGKVISVLNRNMLRHPPTPIITSTLQQEYGNQFGFGARRTMRTPQKLYENGLITYMRTDNAQLSDQAMDSCRKAVQRLYGEDMLRD---QYTK 217
            D  +A+ D LD +   V SV ++   R P  P +TSTLQQE G + GF + RTMRT Q+LYE+G ITYMRTD+  LS  A+D+ R   + LYG + + D   QYT+
Sbjct:  272 DAARALADGLDGREASVTSVEDKPYTRKPYPPFMTSTLQQEAGRKLGFNSERTMRTAQRLYESGYITYMRTDSTTLSQTALDAARTQARELYGPEYVPDAPRQYTR 377          
BLAST of Ggra8827.t1 vs. uniprot
Match: A0A7Y2E9X2 (DNA topoisomerase 1 n=1 Tax=Candidatus Eisenbacteria bacterium TaxID=2212470 RepID=A0A7Y2E9X2_9BACT)

HSP 1 Score: 95.1 bits (235), Expect = 1.270e-18
Identity = 58/156 (37.18%), Postives = 83/156 (53.21%), Query Frame = 0
Query:   65 QVRFVRGMHRSGVGTI---------LRQILQEDIRIFCGFMVRVNPDLVETAPLTPFQHDRMQAMCDRLDLQNGKVISVLNRNMLRHPPTPIITSTLQQEYGNQFGFGARRTMRTPQKLYENGLITYMRTDNAQLSDQAMDSCRKAVQRLYGEDML 211
            ++RFV   +    GT           + I+  D RI  G    ++   ++T  +   + ++ Q++ +RL     KVIS   +   ++P  P  TSTLQQE   +  F A+RTMR  Q LYENG ITYMRTD+  LSDQA+ + R+AV  LY E  L
Sbjct:  195 RMRFVESTYWDIEGTFGTKEGKEFDAKLIMLNDKRIALGRDFDLDTGKLKTDGVVHVEAEQAQSLAERLKSGPWKVISTEEKGFTQNPSPPFTTSTLQQEGSRKLRFSAQRTMRAAQHLYENGYITYMRTDSPTLSDQAVKAAREAVVSLYDESYL 350          
BLAST of Ggra8827.t1 vs. uniprot
Match: A0A0Q5ECL6 (DNA topoisomerase 1 n=22 Tax=Microbacteriaceae TaxID=85023 RepID=A0A0Q5ECL6_9MICO)

HSP 1 Score: 95.1 bits (235), Expect = 1.280e-18
Identity = 57/149 (38.26%), Postives = 76/149 (51.01%), Query Frame = 0
Query:   67 RFVRGMHRSGVGTILRQILQEDIRIFCGFMVRVNPDLVET-APLTPFQHDRMQAMCDRLDLQNGKVISVLNRNMLRHPPTPIITSTLQQEYGNQFGFGARRTMRTPQKLYENGLITYMRTDNAQLSDQAMDSCRKAVQRLYGEDMLRDQ 214
            RF+ G   +G     R +  +  R+  G   R   DL +      P    R  A+   L+     V+SV ++   R P  P  TSTLQQE G +  F AR+TM   Q LYENG ITYMRTD+  LS QA+D+ RK    LYG + + D+
Sbjct:  195 RFLPGEDATGAPFTARLVRLDGDRVATG---RDFDDLGQLKGSAVPLDEQRATALAAALEQSKATVLSVESKPYSRRPAAPFTTSTLQQEAGRKLRFSARQTMSVAQSLYENGYITYMRTDSPSLSKQAIDAARKQAASLYGAETVPDK 340          
BLAST of Ggra8827.t1 vs. uniprot
Match: A0A5Q4F9C0 (DNA topoisomerase 1 n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A5Q4F9C0_9BACT)

HSP 1 Score: 94.7 bits (234), Expect = 1.700e-18
Identity = 48/103 (46.60%), Postives = 63/103 (61.17%), Query Frame = 0
Query:  109 LTPFQHDRMQAMCDRLDLQNGKVISVLNRNMLRHPPTPIITSTLQQEYGNQFGFGARRTMRTPQKLYENGLITYMRTDNAQLSDQAMDSCRKAVQRLYGEDML 211
            L     ++ +++   L      V SV ++   R P  P ITSTLQQE   +FG+ AR TMR  QKLYE G ITYMRTD+  LS QA+ + R AV+R+YG+D L
Sbjct:  254 LVLLDREQAESLQGELAAAQWSVASVASKTQKRTPAPPFITSTLQQEANRKFGYSARDTMRIAQKLYEEGYITYMRTDSTNLSGQAISAARSAVERMYGDDYL 356          
BLAST of Ggra8827.t1 vs. uniprot
Match: A0A2N1WB96 (DNA topoisomerase I (Fragment) n=1 Tax=Gemmatimonadetes bacterium HGW-Gemmatimonadetes-1 TaxID=2013806 RepID=A0A2N1WB96_9BACT)

HSP 1 Score: 92.8 bits (229), Expect = 7.110e-18
Identity = 48/94 (51.06%), Postives = 61/94 (64.89%), Query Frame = 0
Query:  120 MCDRLDLQNGKVISVLNRNMLRHPPTPIITSTLQQEYGNQFGFGARRTMRTPQKLYENGLITYMRTDNAQLSDQAMDSCRKAVQRLYGEDMLRD 213
            + +RL   N +V+SV        P  P  TSTLQQE   +  FGARRTM+  Q+LYENG ITYMRTD+  LSDQA+++ R  V+ LYGE+ L D
Sbjct:    2 LVERLQGGNWRVVSVEETPRTLRPYAPFTTSTLQQEANRKLRFGARRTMQVAQRLYENGYITYMRTDSTALSDQAVNAARAQVRTLYGENYLPD 95          
BLAST of Ggra8827.t1 vs. uniprot
Match: A0A518F0G3 (DNA topoisomerase 1 n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518F0G3_9BACT)

HSP 1 Score: 92.8 bits (229), Expect = 7.930e-18
Identity = 50/97 (51.55%), Postives = 60/97 (61.86%), Query Frame = 0
Query:  118 QAMCDRLDLQNGKVISVLNRNMLRHPPTPIITSTLQQEYGNQFGFGARRTMRTPQKLYENGLITYMRTDNAQLSDQAMDSCRKAVQRLYGEDMLRDQ 214
            +A+  RL+     VIS   R   R P  P  TSTLQQE   +  F A+RTMR  Q+LYENG ITYMRTD+  LS QA+D  R AV+ +YG D L DQ
Sbjct:  261 KALRARLEDGTFNVISAEERPFTRSPAPPFTTSTLQQEGNRKLRFDAKRTMRAAQRLYENGYITYMRTDSVTLSTQAIDLARAAVEDMYGSDFLPDQ 357          
BLAST of Ggra8827.t1 vs. uniprot
Match: A0A511N0Q9 (DNA topoisomerase 1 n=3 Tax=Deinococcus TaxID=1298 RepID=A0A511N0Q9_9DEIO)

HSP 1 Score: 92.8 bits (229), Expect = 7.980e-18
Identity = 45/94 (47.87%), Postives = 63/94 (67.02%), Query Frame = 0
Query:  118 QAMCDRLDLQNGKVISVLNRNMLRHPPTPIITSTLQQEYGNQFGFGARRTMRTPQKLYENGLITYMRTDNAQLSDQAMDSCRKAVQRLYGEDML 211
            +++ +RL      V+S   R   + P  P ITS+LQQE   + GF A+RTMRT Q+LYE G ITYMRTD+  LS +AM++ RK V+++YG+D L
Sbjct:  258 ESLLERLKTTAFSVVSTEERPFTQKPYAPFITSSLQQEGSRKLGFSAQRTMRTAQRLYEQGYITYMRTDSTTLSKEAMEAARKQVRQMYGDDYL 351          
The following BLAST results are available for this feature:
BLAST of Ggra8827.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ICY53.140e-4170.64DNA topoisomerase n=1 Tax=Gracilariopsis chorda Ta... [more]
A0A2H3NWV09.590e-2144.83DNA topoisomerase 1 n=1 Tax=Longimonas halophila T... [more]
A0A2E1Q7P83.740e-1947.71DNA topoisomerase 1 n=2 Tax=Bdellovibrionales TaxI... [more]
type I DNA topoisomerase n=1 Tax=Nakamurella flavida TaxID=363630 RepID=UPI001965F9505.170e-1947.17type I DNA topoisomerase n=1 Tax=Nakamurella flavi... [more]
A0A7Y2E9X21.270e-1837.18DNA topoisomerase 1 n=1 Tax=Candidatus Eisenbacter... [more]
A0A0Q5ECL61.280e-1838.26DNA topoisomerase 1 n=22 Tax=Microbacteriaceae Tax... [more]
A0A5Q4F9C01.700e-1846.60DNA topoisomerase 1 n=1 Tax=Balneolaceae bacterium... [more]
A0A2N1WB967.110e-1851.06DNA topoisomerase I (Fragment) n=1 Tax=Gemmatimona... [more]
A0A518F0G37.930e-1851.55DNA topoisomerase 1 n=1 Tax=Planctomycetes bacteri... [more]
A0A511N0Q97.980e-1847.87DNA topoisomerase 1 n=3 Tax=Deinococcus TaxID=1298... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013497DNA topoisomerase, type IA, centralPFAMPF01131Topoisom_baccoord: 113..214
e-value: 2.0E-22
score: 79.8
IPR013826DNA topoisomerase, type IA, central region, subdomain 3GENE3D1.10.290.10Topoisomerase I, domain 4coord: 143..220
e-value: 7.9E-20
score: 73.5
IPR000380DNA topoisomerase, type IAPANTHERPTHR42785DNA TOPOISOMERASE, TYPE IA, COREcoord: 116..215
NoneNo IPR availablePANTHERPTHR42785:SF1DNA TOPOISOMERASE, TYPE IA, COREcoord: 116..215
IPR023406DNA topoisomerase, type IA, active sitePROSITEPS00396TOPOISOMERASE_I_PROKcoord: 172..186
IPR023405DNA topoisomerase, type IA, core domainSUPERFAMILY56712Prokaryotic type I DNA topoisomerasecoord: 108..215

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:331667..332648 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8827.t1Ggra8827.t1Gracilaria gracilis GNS1m malemRNAtig00000860_pilon 331667..332648 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8827.t1 ID=Ggra8827.t1|Name=Ggra8827.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=249bp
MYPETFRYLETDISLSIGCNDDTRKEQKEEDLFEDVRVDEFFSNFAQFAI
NLRDLFDIDINTKHQVRFVRGMHRSGVGTILRQILQEDIRIFCGFMVRVN
PDLVETAPLTPFQHDRMQAMCDRLDLQNGKVISVLNRNMLRHPPTPIITS
TLQQEYGNQFGFGARRTMRTPQKLYENGLITYMRTDNAQLSDQAMDSCRK
AVQRLYGEDMLRDQYTKTPILCIHLELRGFICGQETLMVTISCQPAEM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013497Topo_IA_cen
IPR013826Topo_IA_cen_sub3
IPR000380Topo_IA
IPR023406Topo_IA_AS
IPR023405Topo_IA_core_domain