Ggra8823.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8823.t1
Unique NameGgra8823.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length970
Homology
BLAST of Ggra8823.t1 vs. uniprot
Match: A0A2V3IR93 (Bromodomain and WD repeat-containing n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IR93_9FLOR)

HSP 1 Score: 672 bits (1735), Expect = 1.980e-213
Identity = 425/757 (56.14%), Postives = 525/757 (69.35%), Query Frame = 0
Query:   17 QQPAVTFKSTSYARDHNCDALLKRAKEFRKNQEKEEKRLLREARNTRRRMIIERERIALEKADGPAGIPLRDFEAPDSEYEDSDEDFDGDAYLSGDSDSXXXXXXXXXXXVXXXXXXXXXXXXXXXXXXEIRPVRXXXXXXXTNESRNESSERVKPQSRRAMRKRRESSLGGRKEFLRSPKDEDLMGSEKRDGFEVFSNVG---HTHDSNPKGDQGPVVDVTEEKPVGRPEFGEQPEVDEVLKNSPQSGDSHSLRGALS----NLSSAPVLIGASAQNRKRRMRICTGSTPAQARLEGSGEGHRLGAIDYAADSHTGALRQERNHVRGSQSVGSCYGRVNQTEAGCNVVSQVPLNPSFTSERVDMKGANEAVFKSIEDHQGDSASCFRPRPSIPHPDSRSRTSPHEQMQNRSFVDGSPHIDIK-------NSKVRNASKPDGSDKSILSDFPVRLTRRQRRERTINGVSNDDPIEKFNHVVDIDEVAQRELEILEAQRNDRYHKKRRXXQSSENGDERFSSGDPEKRYKKRIDPRRVSGLRMRP-RRNSKSEDLMLSKERVAGAPGNDIKSLEASTWLRSTSTPYTYVPQLGDDVMYFLGGHITAMEVSKSSGLDPMLDKADFKRKGVEVLDGNLFSKDQLPLHFQVVDVQFDFPTLLAPKGRSVGSRRGGKRQPDGNVVKPKTKVILTLQLLSPPRRRSGQSTAFVLSYFPVDVSEYLVLTSRVNAALSRTWKPSDPFRILFLNEKRACQYYTGKV 758
            QQP++TFKS  YARD NC+ALLKRA+EFR+NQEKEE+RLLR+ARN RRRMI+ERER+ALEK D    +   DFE PDSE++DSDE    DA  S     XXXXXXXXXXX XXXXXXXXXXXXX     E + V             N   E  + + RR +RKRR       K F  S  D D +  E+  G+E+ +N     H+   N +  +G    +++       E   +    E  KN+P + DS+SLR  +     ++  AP L GA++Q  KRRMRIC+G++ +Q          R   +  AADSH G +   R+HVRG+QS+GSCYGRVN TEAG N+VSQ PLNPSFTSER++++   E  FK +EDH+GDSASCFRP P +P  D+RSRTSP EQM N+S+++ SP  D+K       N     ++K DG ++S LSD P R+ R + R RT NGV  +   +K  H++DIDEVA++EL+ILEAQRN R      XX  +E GDE  SS +P+KR K R DPRR S LRMRP RRNSKSED++LS+ER AGA  ND++ LEASTWLRSTSTPYTYVPQ+GDDV YF GGH+TAMEVS+SSGLDP+LDK+++KR G+EVLDG  F+KDQ PL FQVV++ +DFP+LL+ KGR++GS++ GKR  D   VKPKTKVILTL LLS  RRRSGQS AFVLSYFPVDV EYLVLTSRV+AAL RTWKP DPFRILFLNEKRA QYYTG+V
Sbjct:  736 QQPSMTFKSVEYARDPNCEALLKRAQEFRENQEKEERRLLRDARNARRRMIMERERVALEKEDCLLYL-TGDFEVPDSEFDDSDEXXXXDALTSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSKKPEGKTVG------------NVLDEPSQTRPRRELRKRRRFQRSA-KNFADSG-DSDELRREESPGYEIRTNESDSDHSEGHNERRAKGTDEQISKPDRTSAQEVPTRMRELEEDKNAPSNHDSNSLRAVIGPSSQDMRDAPRLGGAASQG-KRRMRICSGNSASQIAATDPPVHPRKPHVVAAADSHPGTIDAVRSHVRGAQSIGSCYGRVNLTEAGGNIVSQAPLNPSFTSERIEVRRPTEGTFKPMEDHEGDSASCFRPHPVLPDVDARSRTSPREQMHNQSYIERSPGSDVKVDPLFGVNRPAPTSTKGDGPERSSLSDSPARIARCRWRARTRNGVKKEQTNDKLFHIIDIDEVAEKELQILEAQRNKRSRXXXXXXXXAE-GDEENSSSEPDKRLK-RSDPRRTSVLRMRPTRRNSKSEDVLLSRERAAGASINDVQGLEASTWLRSTSTPYTYVPQVGDDVTYFPGGHVTAMEVSRSSGLDPLLDKSNYKRNGLEVLDGTSFNKDQSPLRFQVVELHYDFPSLLSSKGRNLGSKKNGKRPLDEMKVKPKTKVILTLSLLSNIRRRSGQSNAFVLSYFPVDVPEYLVLTSRVDAALHRTWKPFDPFRILFLNEKRAWQYYTGRV 1474          
BLAST of Ggra8823.t1 vs. uniprot
Match: R7QM61 (Bromo domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QM61_CHOCR)

HSP 1 Score: 315 bits (807), Expect = 2.730e-86
Identity = 283/777 (36.42%), Postives = 386/777 (49.68%), Query Frame = 0
Query:   25 STSYARDHNCDALLKRAKEFRKNQEKEEKRLLREARNTRRRMIIERERIALEKADGPAGIPLRDFEAPDSEYEDSDEDFDGDAYLSGDSDSXXXXXXXXXXXVXXXXXXXXXXXXXXXXXXEIRPVRXXXXXXXTNESRNESSERVK-----PQSRRAMRKR-RESSLGGRKEFLRSPKDEDLMGSEKRD----------GFEVFSNVGHTHDSNPKGDQGPVVDVTEEKPVGRPEFGEQPEVDEVLKNSPQSGDSHSLRGALSNLSSA-PVLIGASAQNRKRRMRIC------TGSTPAQ-ARLEGSGEGHRLGAIDYAADSHTGALRQERNHVRGSQSVGSCYGRVNQTEAGCNVVSQVPLNPSFTSERVDMKGANEAV---FKSIEDHQGDSASCFRPR---PSIPHPDSRSRTSPHEQMQN-------RSFVDGSPHIDIKNSKVRNASKPDGSDKSILSDFPVR-LTRRQRRERTINGVSNDDPIEKFNHVVDIDEVAQRELEILEAQRNDRYHKKRRXXQSSENGD-ERFSSGDPEKRYKKRIDPRRVS--GLRMRPRRNSKSEDLMLSKERVAGAPGNDIKSLEASTWLRSTSTPYTYVPQLGDDVMYFLGGHITAMEVSKSSGLDPMLDKADFKRKGVEVLDGNLFSKDQLPLHFQVVDVQFDFPTLL-APKGRSVGSRRGGKRQPD-GNVVKPKTKVILTLQLLSPPRRRSGQSTAFVLSYFPVDVSEYLVLTSRVNAALSRTWKPSDPFRILFLNEKRACQYYTGKV 758
            S +   + N DAL+ RAKEFR NQEKEE+RLLREAR  RRRMI+E+ + ALE+   P+   LRDFE  DS      EDFDG          XXXXXXXXX  +                    RP R       ++   ++   R +     P  RR +R R   S +  R+   R+ +  D + +E  +          G+E+ S    + +S    D+     V      G        E+    +  P      S R      S+A PVL GAS  +  RRMRI        GS PA+ A + G  E       +    +   AL QE      + SV S  GR   +E G  +    P N SFTSERV+ K ++  +    K++ED+QGD+AS  RPR   P +    S  R     + +N       R  V+GS   +  N    +  + DG +KS+LSD P R L +R RR      + N  P      V DIDEVA RE+ +L+A+   +  +KRR     +  D + FS  D  +R  +  D   +S    ++R R  + SE    S      +  +  ++L AS+WLRS+S  YTYVPQLGDDVMYF  GH +AM +S+ +G++P+   A  K+ G E+LDG+ F  D  P+ FQ+VDV ++FP L  + K RS  SR    R     N V  KT ++LTL+L+S    R+G +  FVL Y+PVD  EYLVLT+RV AAL+R W  SD FRILFLNE RA QYYTG +
Sbjct:  681 SRNSVENRNRDALMLRAKEFRANQEKEERRLLREARQARRRMILEKAKAALERDTIPS-FQLRDFEVQDSXXXXXXEDFDGAMEQEASGXXXXXXXXXXXDKIRPD-----------------RPTRTSRRQTHSSSDIDDDRGRSRLGLQMPSDRRQLRMRVGPSRIKKRRRMARNHRLRDRVSAEIGESEGDIGDDSPGYELESQDSDSENSGTSKDRMRGSGVDGNSSTGTLLNRHAAEIRAGSEIRPSVSPRLSSRTPTPVPSTALPVLAGASRSDGSRRMRISIGGNFSAGSPPARFASVTGDRELLPRAPAEVGHGASDVALLQENV----ANSVASYDGRGQASEVGDVIRGPTPRNASFTSERVEQKDSSNVIERSSKAVEDNQGDTASFVRPRRRGPGVEDGSSAWRRQRSLEQRNSSVNKVRRDSVNGSHFANTVNDSS-DVQRTDGHEKSLLSDSPARALRQRARRRGRTRKLDNTLP------VYDIDEVADREVALLDAKGEQKTSRKRRRRSFDDMSDGDYFSDEDVRRRVSRGSDHDDISHRARKVRKRDTTVSERPSTSSAEKGRSVRSRTRTLSASSWLRSSSNRYTYVPQLGDDVMYFPEGHASAMAISRETGVEPVAGLAALKKAGKEILDGSSFPADASPVRFQIVDVSYEFPVLSNSQKPRSASSRPKASRGSHVHNRVTAKTTLVLTLRLVSGLPSRTGATDRFVLCYYPVDAPEYLVLTNRVEAALNRAWTASDRFRILFLNESRAWQYYTGTI 1428          
BLAST of Ggra8823.t1 vs. uniprot
Match: A0A2V3IQM9 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQM9_9FLOR)

HSP 1 Score: 68.2 bits (165), Expect = 3.980e-9
Identity = 55/142 (38.73%), Postives = 79/142 (55.63%), Query Frame = 0
Query:  806 TPSIMQPSFLGRQPGSLPCSAGAAVVPRSQPVSTPICFAAPLTPSIPYASSASALSSLEEDRVVHSEDSMQSDDCYERTVQRLKLCIPRSKHIPVPRARPRAP-RPLATTPPLPDACPIVSRFLRREEARRRGES--TFVDP 944
            TP+   P+    QP        A  VPR+  VS P   +AP   +IP          ++    ++ +D +  ++ ++     L+L IP SK IPVP+ARPRA   P+ + PPLPDA PIV+ FLRRE AR+RGE+  +FV+P
Sbjct:   27 TPACSFPTHASSQPSPPAPLCFAQTVPRAH-VSYPC--SAPTLATIPTTEPEEREEDVDN---LNQDDWLHPEEIHKPVCAALRLLIPPSKPIPVPKARPRARVTPVYSPPPLPDARPIVAHFLRRE-ARKRGENVESFVEP 161          
The following BLAST results are available for this feature:
BLAST of Ggra8823.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IR931.980e-21356.14Bromodomain and WD repeat-containing n=1 Tax=Graci... [more]
R7QM612.730e-8636.42Bromo domain-containing protein n=1 Tax=Chondrus c... [more]
A0A2V3IQM93.980e-938.73Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 34..65
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 380..457
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 504..555
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 116..140
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..108
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 511..555
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..271
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 237..251
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 158..214
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 254..271
NoneNo IPR availablePANTHERPTHR16266WD REPEAT DOMAIN 9coord: 92..760

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:303613..308429 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8823.t1Ggra8823.t1Gracilaria gracilis GNS1m malemRNAtig00000860_pilon 303613..308429 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8823.t1 ID=Ggra8823.t1|Name=Ggra8823.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=970bp
MIFPLGSVRDKVDNVVQQPAVTFKSTSYARDHNCDALLKRAKEFRKNQEK
EEKRLLREARNTRRRMIIERERIALEKADGPAGIPLRDFEAPDSEYEDSD
EDFDGDAYLSGDSDSSSSSDDDDEDDVEDDVDERMPEDDGNDEEHEIRPV
RRKRRRTSTNESRNESSERVKPQSRRAMRKRRESSLGGRKEFLRSPKDED
LMGSEKRDGFEVFSNVGHTHDSNPKGDQGPVVDVTEEKPVGRPEFGEQPE
VDEVLKNSPQSGDSHSLRGALSNLSSAPVLIGASAQNRKRRMRICTGSTP
AQARLEGSGEGHRLGAIDYAADSHTGALRQERNHVRGSQSVGSCYGRVNQ
TEAGCNVVSQVPLNPSFTSERVDMKGANEAVFKSIEDHQGDSASCFRPRP
SIPHPDSRSRTSPHEQMQNRSFVDGSPHIDIKNSKVRNASKPDGSDKSIL
SDFPVRLTRRQRRERTINGVSNDDPIEKFNHVVDIDEVAQRELEILEAQR
NDRYHKKRRRRQSSENGDERFSSGDPEKRYKKRIDPRRVSGLRMRPRRNS
KSEDLMLSKERVAGAPGNDIKSLEASTWLRSTSTPYTYVPQLGDDVMYFL
GGHITAMEVSKSSGLDPMLDKADFKRKGVEVLDGNLFSKDQLPLHFQVVD
VQFDFPTLLAPKGRSVGSRRGGKRQPDGNVVKPKTKVILTLQLLSPPRRR
SGQSTAFVLSYFPVDVSEYLVLTSRVNAALSRTWKPSDPFRILFLNEKRA
CQYYTGKVDLFTEKNQRIPFLVALRDPIPLSLEDAAPLTASSSCSPPLLI
PPSHPTPSIMQPSFLGRQPGSLPCSAGAAVVPRSQPVSTPICFAAPLTPS
IPYASSASALSSLEEDRVVHSEDSMQSDDCYERTVQRLKLCIPRSKHIPV
PRARPRAPRPLATTPPLPDACPIVSRFLRREEARRRGESTFVDPFFERVG
ARCRFYGHVQYNRDRPDRS*
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