Ggra8810.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8810.t1
Unique NameGgra8810.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length169
Homology
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BLAST of Ggra8810.t1 vs. uniprot
Match: A0A2V3IUE9 (DUF202 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUE9_9FLOR)

HSP 1 Score: 66.2 bits (160), Expect = 2.950e-10
Identity = 53/166 (31.93%), Postives = 79/166 (47.59%), Query Frame = 0 
Query:    1 MLRTLTNGELRDELHVRSLAHRRTLQRLLRAAAPPPSXXXXXXXXSSRALLPLFGRVLVQLSNERTLHSWLRSALQLAAFAFALARLSAPPPLXXXXXXXXXXXXXXXXXLAVAALAPLFGAYGALHYCRVARR---HAPFHVDRLGALLAALLSLTAAALALVVM 163
            +L++L+N ELRDE+ +  LAHRR   ++L    P  S             +P+FG +LV LSN RT HSW+R+  Q    + A++RL A                     + +  +  +   YG   Y  V +R      F  D +GA+LA  +SL  AAL L+V+
Sbjct:   57 VLQSLSNAELRDEVRMNVLAHRR---KMLSLTQPARSCG-----------VPVFGAILVHLSNVRTCHSWIRTTFQAVILSLAVSRLGA----------LRDERIALGVAIGICCMGAVHSVYGGWRYLAVMKRVENGMRFSADTVGAVLALCVSLCVAALVLLVL 198
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BLAST of Ggra8810.t1 vs. uniprot
Match: A0A2V3J467 (SAM domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J467_9FLOR)

HSP 1 Score: 61.2 bits (147), Expect = 2.610e-8
Identity = 40/92 (43.48%), Postives = 53/92 (57.61%), Query Frame = 0 
Query:    1 MLRTLTNGELRDELHVRSLAHRRTL----QRLLRAAAPPPSXXXXXXXXSSRALLPLFGRVLVQLSNERTLHSWLRSALQLAAFAFALARLS 88
            +L+TLT+ ELRD+L V +L HRR +    +RLL+  APP +             LP  GR+L  LSN RT HSW+R  +Q  AFA    RL+
Sbjct:   68 ILKTLTSEELRDDLAVTNLRHRRHILDATRRLLQEDAPPTAQY-----------LPEHGRILDHLSNVRTYHSWIRVGIQFLAFAVVTLRLA 148
The following BLAST results are available for this feature:
BLAST of Ggra8810.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IUE92.950e-1031.93DUF202 domain-containing protein n=1 Tax=Gracilari... [more]
A0A2V3J4672.610e-843.48SAM domain-containing protein n=1 Tax=Gracilariops... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003807Domain of unknown function DUF202PFAMPF02656DUF202coord: 61..134
e-value: 8.2E-11
score: 42.2
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 70..89
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..69
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 132..142
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 168..168
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 109..131
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 90..108
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 143..167
NoneNo IPR availableTMHMMTMhelixcoord: 144..166
NoneNo IPR availableTMHMMTMhelixcoord: 109..131

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:192415..192921 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8810.t1Ggra8810.t1Gracilaria gracilis GNS1m malemRNAtig00000860_pilon 192415..192921 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8810.t1 ID=Ggra8810.t1|Name=Ggra8810.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=169bp
MLRTLTNGELRDELHVRSLAHRRTLQRLLRAAAPPPSPSPPSPPSSSRAL
LPLFGRVLVQLSNERTLHSWLRSALQLAAFAFALARLSAPPPLPPPLPLP
RALALPDALALAVAALAPLFGAYGALHYCRVARRHAPFHVDRLGALLAAL
LSLTAAALALVVMRSIAP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003807DUF202