Ggra8800.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8800.t1
Unique NameGgra8800.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length378
Homology
BLAST of Ggra8800.t1 vs. uniprot
Match: A0A2V3IUG7 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUG7_9FLOR)

HSP 1 Score: 442 bits (1137), Expect = 4.460e-152
Identity = 220/377 (58.36%), Postives = 286/377 (75.86%), Query Frame = 0
Query:    1 MSRSGENNQFEPQLSKGISVDVPTGSTIYDPAIISLREDFRAKVEERKAKQLQQSPDNDIAIQSPMHVNVTSPVPRKSRKSRKSLFLRADNDAAESESEDLELGDLDGETELCCNGYIPLFPLLIFMNSVKILAGIAGMAIGVFQLITGGNSVGVSSLERLVISGSFLFSIAFITIGVVLIISGLLGVVLFTIRSRTNSRTAKRLDVVYHSGLFLLVIVLFVLFVLTVWVWVQTSKGGIYNNEFWQELVRSNPSHLCKTEERLNCAAYELEQCMISANQTKMLFCPGHFCIDFCRITTENVNVQPICAACRDESLDTIDSFVSCKRNEIQFTNTTACMNVANADLQAAYRRLLAAALVSFLWILVSVCVSTYQYCFS 377
            MS        +P+LS GISVDVPTGSTIYDPA++SLREDF+AK EERKAKQ +Q+P N + + SP+HV  TSP+PR+S K      L    D  +  SEDLELG+  GE E+CCNGYIPL+P LI MN +K+LAG+AG++IGV QL TGG S+GVSS+E+L+ISGSFLF IA I IG++L++SG LG+ LF+IR + +  TAK LD++YHSGLFL+ I+  V   LT+W+W++ SKGG+Y+   W++LVR++P HLC TE+RL CAAY+L+QC   ANQT +LFCPGHFCIDFCRI TE+VNVQP+C +CR++ L  ID    C+ +E ++T    C  +  AD+  +YRRLLA ALV+FLW++VSV VSTYQYCFS
Sbjct:    1 MSADRRELGLQPKLSVGISVDVPTGSTIYDPAVLSLREDFKAKYEERKAKQQEQAPTNQVRLSSPLHV--TSPLPRQSLK------LTGKADEPKEASEDLELGEDGGEKEMCCNGYIPLYPFLIMMNVLKVLAGLAGVSIGVIQLTTGGGSIGVSSIEKLIISGSFLFGIAGIVIGMLLVVSGFLGITLFSIRLQNDRFTAKGLDMIYHSGLFLIAILCLVSLGLTIWIWLRASKGGVYDEVLWKDLVRTHPLHLCATEQRLECAAYKLQQCNEVANQTNILFCPGHFCIDFCRIATEDVNVQPVCESCREDPLKNIDILSECRHHESEYTAERGCKEIVEADVLGSYRRLLAVALVTFLWVMVSVLVSTYQYCFS 369          
BLAST of Ggra8800.t1 vs. uniprot
Match: A0A7S0ZHV8 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZHV8_9RHOD)

HSP 1 Score: 73.6 bits (179), Expect = 1.050e-10
Identity = 73/290 (25.17%), Postives = 135/290 (46.55%), Query Frame = 0
Query:   95 ESESEDLELGDLDGETELCCNGYI----PLFPLLIFMNSVKILAGIAGMAIGVFQLITGGNSV---GVSSLERLVISGSFLFSIAFITIGVVLIISGLLGVVLFTIRSRTNSRTAKR-LDVVYHSGLFLLVIVLFVLFVLT-VWVWVQTSKGGIYNNEFWQELVRSNPSHLCKTEERLNCAAYELEQCMISANQTKMLFCPGHFCIDFCRITTENVNVQPICAACRDESLDTIDSFVSCKRNEIQFTNTTACMNVANADLQAAYRRLLAAALVSFLWILVSVCVSTYQYC 375
            + E+ D+     + E   CC  ++    PL   +I +N++ I+ G  G+ +GV   I  G  V   G S++E +V S  ++FSI  I +G ++I    LG+ +    +        R +  +Y S + L++++L  + +L+ V + +     G ++ + W + V  +P   C+ +    CA Y    C  S N      CPGH C+DFCR+  +  N    C AC +++ +  D F  CK  E +F     C    N  L   Y  ++    +S  ++++ +   +++ C
Sbjct:  118 DEENPDIPDATYNKEDAGCCKSFMTSVYPLMITIIVLNAIMIIMG--GVILGVGVYILEGGEVQLSGFSNIEGVVTSSPYVFSIICIVLGSIIIFFATLGIAISKFMATGGMFGFIRCMYFIYQSFMILVLLILAAVCILSGVGLGLIRGDNG-FSADGWGDNVVLDPRFSCQQQYDFLCAGYLDGNCD-SDNPDINADCPGHRCVDFCRVEEDVPNDTNDCKACINQAENGWD-FPQCKDFETRFA-FNGCQQEINNSLSDTYILVIIVTTISAFFVILVIAAGSWKSC 401          
The following BLAST results are available for this feature:
BLAST of Ggra8800.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IUG74.460e-15258.36Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A7S0ZHV81.050e-1025.17Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 352..375
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 376..377
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 167..193
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..129
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 130..147
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 233..351
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 213..232
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 194..212
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 148..166
NoneNo IPR availableTMHMMTMhelixcoord: 168..190
NoneNo IPR availableTMHMMTMhelixcoord: 210..232
NoneNo IPR availableTMHMMTMhelixcoord: 352..374
NoneNo IPR availableTMHMMTMhelixcoord: 133..155

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:162193..163406 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8800.t1Ggra8800.t1Gracilaria gracilis GNS1m malemRNAtig00000860_pilon 162193..163406 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8800.t1 ID=Ggra8800.t1|Name=Ggra8800.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=378bp
MSRSGENNQFEPQLSKGISVDVPTGSTIYDPAIISLREDFRAKVEERKAK
QLQQSPDNDIAIQSPMHVNVTSPVPRKSRKSRKSLFLRADNDAAESESED
LELGDLDGETELCCNGYIPLFPLLIFMNSVKILAGIAGMAIGVFQLITGG
NSVGVSSLERLVISGSFLFSIAFITIGVVLIISGLLGVVLFTIRSRTNSR
TAKRLDVVYHSGLFLLVIVLFVLFVLTVWVWVQTSKGGIYNNEFWQELVR
SNPSHLCKTEERLNCAAYELEQCMISANQTKMLFCPGHFCIDFCRITTEN
VNVQPICAACRDESLDTIDSFVSCKRNEIQFTNTTACMNVANADLQAAYR
RLLAAALVSFLWILVSVCVSTYQYCFS*
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