Ggra880.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra880.t1
Unique NameGgra880.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length424
Homology
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BLAST of Ggra880.t1 vs. uniprot
Match: A0A2V3IX85 (Transcription factor Dp-1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IX85_9FLOR)

HSP 1 Score: 122 bits (306), Expect = 7.010e-27
Identity = 79/153 (51.63%), Postives = 95/153 (62.09%), Query Frame = 0 
Query:    1 MRRRYPQRDLRAVERNARRRVYDAVKVMAAVGAIRKQRKSLTWLGVAHLVPDAAELRRLVARKAALLARKRRTLAAVSRAVHQFGRLLASRRAQPAPRALHHHRARSRFYFPFVLVKGH-QPHVNCSPDGTRLSLRYHSPFSLFSEADVVSML 152
            MR     RDL AVERNARRRVYDA+KVM AVG IRK+ K L WLGV HL+PD   L+RL+  K  LL RKR  L A+  +++ F   L   R Q  PR+L     R    FPFVL+     P +  SPD +RL+L    PFSL+SE DVV+ML
Sbjct:   78 MRHHVSHRDLHAVERNARRRVYDALKVMTAVGTIRKRGKLLHWLGVHHLLPDVTALKRLLNHKQLLLQRKRSRLTALIHSINAFHAFL---RTQTVPRSL---APRPVLPFPFVLLTAAAHPRITHSPDSSRLTLHLPRPFSLYSETDVVAML 224
The following BLAST results are available for this feature:
BLAST of Ggra880.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IX857.010e-2751.63Transcription factor Dp-1 n=1 Tax=Gracilariopsis c... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 3..49
e-value: 3.7E-9
score: 38.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 299..363
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 377..423
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 174..220
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 391..423
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 7..46

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000212_piloncontigtig00000212_pilon:45855..47126 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra880.t1Ggra880.t1Gracilaria gracilis GNS1m malemRNAtig00000212_pilon 45855..47126 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra880.t1 ID=Ggra880.t1|Name=Ggra880.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=424bp
MRRRYPQRDLRAVERNARRRVYDAVKVMAAVGAIRKQRKSLTWLGVAHLV
PDAAELRRLVARKAALLARKRRTLAAVSRAVHQFGRLLASRRAQPAPRAL
HHHRARSRFYFPFVLVKGHQPHVNCSPDGTRLSLRYHSPFSLFSEADVVS
MLHDHSTPLHEQCSPPHHHSSPTRALCTFDTDQPPPFAPLSPPLSPPSSH
CMHAAALPSAPSPSPPPTPPNQLIMMRHREHVQVLPPCTHRPPPRRYPVL
LKLRVRAPPRLSRSLSTSSCATMSYSNLRNCRTHAEHCSASLDTIMCQPQ
SNTPPPLAATIEQPGAGDAAEHAQAPRPTQKRGVNDGAVIGEQVEQGGAP
RSTVSHREGAPHGCVPIDRDAIWSAIVDETAAGGRGNGPGGEAERRQRGD
EQRQEIDLMCHEEPFSAGELELD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036388WH-like_DNA-bd_sf
IPR036390WH_DNA-bd_sf