Ggra8765.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8765.t1
Unique NameGgra8765.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length189
Homology
BLAST of Ggra8765.t1 vs. uniprot
Match: A0A2V3IWA0 (NEP1-interacting protein-like 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IWA0_9FLOR)

HSP 1 Score: 127 bits (318), Expect = 1.130e-33
Identity = 83/177 (46.89%), Postives = 105/177 (59.32%), Query Frame = 0
Query:    1 MPTWSVAFISVCGVLFVLIVAFTARAIYRHLSQALYSPPRSEGVCVTQPPPSLRAVCTPHSAA----------PLSDDKIDMVAPRCDKPPRRSCVCSICLDVIQRAQSARVIASCGHIFHSSCVKSWLRRSNECPSCQREALLEETVKHLLDLHAKRAHAHARPSIADRLRRSGSF 167
            MPTW VAF+++ GV+ +L++  TARA+ RHLS  LY P  S G  +   PP LRA  T  S+A           LSD +I   AP+       S +CSICLD I   QS R I  CGH FHS+CVK+WLRR+N+CP+CQR AL+    K  LD+ +K    +   SI DRL  SGSF
Sbjct:    1 MPTWCVAFLALWGVIILLVLVITARAVRRHLSFGLY-PSHSNGHELISEPP-LRASSTTTSSAHSERDRASAGALSDAQIANAAPKTRNVDAES-MCSICLDSIDVGQSVRTIVQCGHSFHSACVKTWLRRANKCPNCQRTALVHAE-KARLDVDSKSLRRYN--SITDRLHPSGSF 171          
BLAST of Ggra8765.t1 vs. uniprot
Match: A0A822Y5E1 (RING-type domain-containing protein n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A822Y5E1_NELNU)

HSP 1 Score: 61.2 bits (147), Expect = 1.320e-8
Identity = 40/127 (31.50%), Postives = 56/127 (44.09%), Query Frame = 0
Query:    8 FISVCGVLFVLIVAF-----TARAIYRHLSQALYSPPRSEGVCVTQPPPSLRAVCTPHSAAPLSDDKIDMVAPRCDKPPRRSCVCSICLDVIQRAQSARVIASCGHIFHSSCVKSWLRRSNECPSCQ 129
            F ++C +LF   +AF        ++YR   +   S  R  G    +P PSL      H    + D +              S  C+ICLD +      RV+  C H FH+SC+ SWL RSN CP C+
Sbjct:   26 FTALCFLLFGYFIAFYFMVNITCSLYRKCMEMRMSNQRRRG---HRPDPSLPLSVRSHPTVDVGDGEDS------------SSECAICLDALTEDSRCRVLPGCNHRFHTSCIDSWLSRSNSCPVCR 137          
BLAST of Ggra8765.t1 vs. uniprot
Match: A0A835KFI0 (RING-type domain-containing protein n=2 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835KFI0_9POAL)

HSP 1 Score: 60.8 bits (146), Expect = 3.240e-8
Identity = 23/44 (52.27%), Postives = 32/44 (72.73%), Query Frame = 0
Query:   87 CSICLDVIQRAQSARVIASCGHIFHSSCVKSWLRRSNECPSCQR 130
            C+ICL   +  Q+ RV+  CGH+FH+SCV +WLR  + CPSC+R
Sbjct:   99 CAICLAEFEDGQAIRVLPQCGHVFHASCVDTWLRGHSSCPSCRR 142          
BLAST of Ggra8765.t1 vs. uniprot
Match: A0A1X6NXL4 (RING-type domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NXL4_PORUM)

HSP 1 Score: 62.0 bits (149), Expect = 5.510e-8
Identity = 23/47 (48.94%), Postives = 34/47 (72.34%), Query Frame = 0
Query:   86 VCSICLDVIQRAQSARVIASCGHIFHSSCVKSWLRRSNECPSCQREA 132
            VC+ICL+ ++  +  R +  CGH +HSSCV+SWLR++N CP C  +A
Sbjct:  229 VCAICLEGVEFGELKRTLTVCGHEYHSSCVRSWLRKANRCPQCNAKA 275          
BLAST of Ggra8765.t1 vs. uniprot
Match: A0A8J5TCN3 (Uncharacterized protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5TCN3_ZIZPA)

HSP 1 Score: 59.7 bits (143), Expect = 8.640e-8
Identity = 23/50 (46.00%), Postives = 33/50 (66.00%), Query Frame = 0
Query:   87 CSICLDVIQRAQSARVIASCGHIFHSSCVKSWLRRSNECPSCQREALLEE 136
            C+ICL   +  Q  R +  CGH+FH+SCV +WLR  + CPSC+R  + E+
Sbjct:   98 CAICLAEFEDDQDVRALPQCGHVFHASCVDTWLRDHSSCPSCRRVLVAEK 147          
BLAST of Ggra8765.t1 vs. uniprot
Match: RING-H2 finger protein ATL39-like n=1 Tax=Oryza brachyantha TaxID=4533 RepID=UPI001ADAD2EF (RING-H2 finger protein ATL39-like n=1 Tax=Oryza brachyantha TaxID=4533 RepID=UPI001ADAD2EF)

HSP 1 Score: 58.5 bits (140), Expect = 3.340e-7
Identity = 22/50 (44.00%), Postives = 33/50 (66.00%), Query Frame = 0
Query:   84 SCVCSICLDVIQRAQSARVIASCGHIFHSSCVKSWLRRSNECPSCQREAL 133
            S +C++CL+ +QR ++AR + +CGH+FH  CV  WL     CP C+ E L
Sbjct:  135 SVLCAVCLEDVQRGETARRLPACGHLFHRDCVDMWLHSHTTCPLCRCEVL 184          
BLAST of Ggra8765.t1 vs. uniprot
Match: A0A2Z7AJ44 (RING-type domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7AJ44_9LAMI)

HSP 1 Score: 57.4 bits (137), Expect = 3.420e-7
Identity = 23/55 (41.82%), Postives = 32/55 (58.18%), Query Frame = 0
Query:   87 CSICLDVIQRAQSARVIASCGHIFHSSCVKSWLRRSNECPSCQREALLEETVKHL 141
            C+ICL   Q  +  R++ SCGH FH SC+ +WLR+ + CP C+         KHL
Sbjct:   51 CTICLSEYQEKEVLRIMPSCGHSFHLSCIDTWLRKQSTCPVCRLSVQSSFDTKHL 105          
BLAST of Ggra8765.t1 vs. uniprot
Match: A0A6P7V0W2 (E3 ubiquitin-protein ligase RNF103-like n=1 Tax=Ixodes scapularis TaxID=6945 RepID=A0A6P7V0W2_IXOSC)

HSP 1 Score: 58.2 bits (139), Expect = 3.770e-7
Identity = 27/50 (54.00%), Postives = 33/50 (66.00%), Query Frame = 0
Query:   80 PPRRSCVCSICLDVIQRAQSARVIASCGHIFHSSCVKSWLRRSNECPSCQ 129
            PPR  C  SICL   + A + R +  CGH+FHS CV SWLRR+N CP C+
Sbjct:  132 PPREKC--SICLRTFREADTLRQLP-CGHLFHSRCVTSWLRRNNICPVCR 178          
BLAST of Ggra8765.t1 vs. uniprot
Match: A0A7S0G6W9 (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0G6W9_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.040e-6
Identity = 23/46 (50.00%), Postives = 31/46 (67.39%), Query Frame = 0
Query:   84 SCVCSICLDVIQRAQSARVIASCGHIFHSSCVKSWLRRSNECPSCQ 129
            S VC+ICL  ++      ++ SC H+FHSSC+K WLRR N CP C+
Sbjct:   19 SLVCTICLSEVRNGDRVGLL-SCTHVFHSSCLKDWLRRKNACPLCR 63          
BLAST of Ggra8765.t1 vs. uniprot
Match: RING-H2 finger protein ATL39 n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=UPI0007753D5E (RING-H2 finger protein ATL39 n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=UPI0007753D5E)

HSP 1 Score: 56.2 bits (134), Expect = 1.310e-6
Identity = 39/131 (29.77%), Postives = 62/131 (47.33%), Query Frame = 0
Query:    7 AFISVCGVLFVLIVAFTARAIYRHLSQ--------ALYSPPRSEGVCVTQPPPSLRAVCTPHSAAPLSDDKIDMVAPRCDKPPRRSCVCSICLDVIQRAQSARVIASCGHIFHSSCVKSWLRRSNECPSCQ 129
            AF+++ G++ VL V F  R+  RH +         AL    +  G+ +     S+    T H+AA  S  +  ++  R D      C C++CLD +      R++ SC H FH++CV  WL     CP C+
Sbjct:   17 AFVAIVGIV-VLAVIFYTRSSARHAAPGAAPDAVTALQGQQQQRGLGLGPDDVSVLPTFTYHAAATASPGRCGLIG-RGDAKAAADC-CAVCLDELGEGAVVRMLPSCKHYFHATCVDVWLLSRATCPVCR 144          
The following BLAST results are available for this feature:
BLAST of Ggra8765.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IWA01.130e-3346.89NEP1-interacting protein-like 1 n=1 Tax=Gracilario... [more]
A0A822Y5E11.320e-831.50RING-type domain-containing protein n=1 Tax=Nelumb... [more]
A0A835KFI03.240e-852.27RING-type domain-containing protein n=2 Tax=Digita... [more]
A0A1X6NXL45.510e-848.94RING-type domain-containing protein n=1 Tax=Porphy... [more]
A0A8J5TCN38.640e-846.00Uncharacterized protein n=1 Tax=Zizania palustris ... [more]
RING-H2 finger protein ATL39-like n=1 Tax=Oryza brachyantha TaxID=4533 RepID=UPI001ADAD2EF3.340e-744.00RING-H2 finger protein ATL39-like n=1 Tax=Oryza br... [more]
A0A2Z7AJ443.420e-741.82RING-type domain-containing protein n=1 Tax=Dorcoc... [more]
A0A6P7V0W23.770e-754.00E3 ubiquitin-protein ligase RNF103-like n=1 Tax=Ix... [more]
A0A7S0G6W91.040e-650.00Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
RING-H2 finger protein ATL39 n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=UPI0007753D5E1.310e-629.77RING-H2 finger protein ATL39 n=1 Tax=Oryza sativa ... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 87..128
e-value: 4.2E-7
score: 39.6
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 87..129
e-value: 2.0E-11
score: 44.1
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 87..129
score: 13.079398
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 81..165
e-value: 2.4E-14
score: 55.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 153..188
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 174..188
NoneNo IPR availablePANTHERPTHR14155:SF296RING-H2 FINGER PROTEIN ATL57coord: 6..147
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 6..147
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..28
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 29..188
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 86..133
NoneNo IPR availableTMHMMTMhelixcoord: 5..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:71382..71948 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8765.t1Ggra8765.t1Gracilaria gracilis GNS1m malemRNAtig00000860_pilon 71382..71948 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8765.t1 ID=Ggra8765.t1|Name=Ggra8765.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=189bp
MPTWSVAFISVCGVLFVLIVAFTARAIYRHLSQALYSPPRSEGVCVTQPP
PSLRAVCTPHSAAPLSDDKIDMVAPRCDKPPRRSCVCSICLDVIQRAQSA
RVIASCGHIFHSSCVKSWLRRSNECPSCQREALLEETVKHLLDLHAKRAH
AHARPSIADRLRRSGSFASHGAPAAAAPPPPPPTPSRR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD