Ggra8761.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8761.t1
Unique NameGgra8761.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length382
Homology
BLAST of Ggra8761.t1 vs. uniprot
Match: A0A2V3IWG9 (USP domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IWG9_9FLOR)

HSP 1 Score: 408 bits (1048), Expect = 3.080e-138
Identity = 206/388 (53.09%), Postives = 273/388 (70.36%), Query Frame = 0
Query:    2 LLDRSLLIVAPRFAGSYLDDMPLDSYSPWKRRPTKRKRRTVPFKQPRGLWNTGQSCHLGATISALSALSCIRAWVMNQPALWRPPMSTLADYLLQAA--SSKHNGGGLDPRPILALLETSGWKSRYAQDAHESMLRVLELIQDAINSSPRE-----RRHGPTFRMNKSTQTPPLCVGRTQMAMDLQREELPPYLSTTASWNHCFSCGYTSPVTLTDSPMILVPVT-ERSKPLASLVTNAMYSRTRVDMYCDGCAQSCTHLHCSEVWRLPRALIILLQRASYGLRGVSITRSPVWFYKYINITRPY-RGDNHGEVCYALRSVVRYAGSASGHRSHYDCILRAPESSVKGIDCVDSSSRWWHVDDDHITRSSVQSACDTSHLYLLMFEME 380
            +LDR+LLIVAPR  GSY+D+ PL   + + R P  RKR     KQPRG+WN+GQSCHL A I+ALSAL  +R W+ NQP L   P+  L   +LQAA  + +HN   +DPRP L+LLE  GWKSR+AQDAHE++LRVLEL++D +   PR+     +  G   R  +       C+GRT++ M+ +RE  PPY STTASW+HCF CGYT+P+ LTDSPM++V  T ER KPLASL+++ M+S+T+V M C+GC ++C HLHCSEVWR P+ LI L+QR  YG RGVSI+R+ VWF   I+I  PY RG    E+ Y LRSVVR+ G ASG++SHYDCI+R PE++  G+  VDS  +WW VDD  +  S ++ AC++SH+YL +FE+E
Sbjct:    1 MLDRTLLIVAPRLEGSYIDERPLPKPTRYSR-PRARKRHKA--KQPRGMWNSGQSCHLSAIITALSALPALRHWISNQPPLHNAPIVPLTHSILQAACGTEEHNVA-IDPRPTLSLLERDGWKSRFAQDAHETLLRVLELVEDHVEE-PRQALVQTQSVGCLVRDERQLTH---CIGRTKVVMEWKRERKPPYTSTTASWSHCFQCGYTTPLVLTDSPMMVVSATAEREKPLASLISHTMFSKTQVHMRCEGCGENCAHLHCSEVWRFPKVLITLVQRGMYGARGVSISRAKVWFNDSISIYGPYGRGQRRRELRYGLRSVVRHVGGASGYKSHYDCIVRCPEATGWGLCGVDSKPKWWRVDDARVMASCMRQACESSHVYLTLFELE 380          
BLAST of Ggra8761.t1 vs. uniprot
Match: R7QD84 (USP domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QD84_CHOCR)

HSP 1 Score: 222 bits (565), Expect = 2.590e-65
Identity = 138/386 (35.75%), Postives = 207/386 (53.63%), Query Frame = 0
Query:    4 DRSLLIVAPRFAGSYLDDMPLDSYSPWKRRPTKRKRRTVPFKQPRGLWNTGQSCHLGATISALSALSCIRAWVMNQP--ALWRPPMSTLADYLLQAASSKHNGGGLDPRPILALLETSGWKSRYAQDAHESMLRVLELIQDAINSSPRERRH--GPTFRMNKSTQTPPLCVGRTQMAMDL---QREELPPYLSTTASWNHCFSCGYTSPVTLTDSPMILVPVTERSKPLASLVTNAMYSRTRVDMYCDGCAQSCTHLHCSEVWRLPRALIILLQRASYGLRGVSITRSPVWFYKYINI-TRPYRGDNHGEVCYALRSVVRYAGSASGHRSHYDCIL-RAPESSVKGIDCVDSSSRWWHVDDDHITRSSVQSACDTSHLYLLMFEME 380
            + S LI APR   S+      +   P +R   KR R      +PRGLWN+GQSCHLG+ I+ALSA+S +R W++ Q   + +  P S +  Y+L+ A S      LDPRP+L LLE SGWKSR+AQDAHE+M R+LE+++D   +   +     G  +R         LC G+  MA D+   +R+  PP+ +  +S N C SCG+ SP +   S ++ +P+    + L+ L  N       +DM CD C Q   H    E+ R P  L++ LQ+A YG    + TR  V     ++I  R  + +      Y+LRSVV + G A+   SH+D ++ R  E   +G+  +  S RW+HVDD HI+R    +    S  YL++++ +
Sbjct:   11 ENSKLIYAPRLQASFRSFASKEQLVPTRR---KRTRDEWIEPRPRGLWNSGQSCHLGSVIAALSAVSMLRDWLIEQDTTSAYETPFSLVKHYILECAPSSAYRRALDPRPLLTLLEQSGWKSRHAQDAHETMARLLEILEDGYGAQSNQGTSPLGLGWRSEPGGCGTSLCYGKPPMA-DVAIGKRKSGPPFSALLSSSNKCHSCGFKSPTSFQSSFLLTLPIPRYERTLSELFYNTYMRGEEIDMRCDHCMQLGLHTRFLEMKRFPGVLVMHLQKAIYGSGIDASTRRQVALSHSLHIPVRVGKKEVARVETYSLRSVVGHKGVANTWSSHFDAVVSRKCEGVCEGLLGLTESRRWFHVDDQHISRCDSDTPLIPSQTYLVVYQRQ 392          
The following BLAST results are available for this feature:
BLAST of Ggra8761.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IWG93.080e-13853.09USP domain-containing protein n=1 Tax=Gracilariops... [more]
R7QD842.590e-6535.75USP domain-containing protein n=1 Tax=Chondrus cri... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001394Peptidase C19, ubiquitin carboxyl-terminal hydrolasePFAMPF00443UCHcoord: 49..377
e-value: 2.4E-14
score: 53.5
NoneNo IPR availableGENE3D3.90.70.10Cysteine proteinasescoord: 44..381
e-value: 2.5E-29
score: 104.2
NoneNo IPR availableCDDcd02257Peptidase_C19coord: 127..378
e-value: 1.98098E-11
score: 61.7302
IPR028889Ubiquitin specific protease domainPROSITEPS50235USP_3coord: 48..380
score: 19.431967
IPR038765Papain-like cysteine peptidase superfamilySUPERFAMILY54001Cysteine proteinasescoord: 46..378

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000860_piloncontigtig00000860_pilon:63873..65018 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8761.t1Ggra8761.t1Gracilaria gracilis GNS1m malemRNAtig00000860_pilon 63873..65018 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8761.t1 ID=Ggra8761.t1|Name=Ggra8761.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=382bp
MLLDRSLLIVAPRFAGSYLDDMPLDSYSPWKRRPTKRKRRTVPFKQPRGL
WNTGQSCHLGATISALSALSCIRAWVMNQPALWRPPMSTLADYLLQAASS
KHNGGGLDPRPILALLETSGWKSRYAQDAHESMLRVLELIQDAINSSPRE
RRHGPTFRMNKSTQTPPLCVGRTQMAMDLQREELPPYLSTTASWNHCFSC
GYTSPVTLTDSPMILVPVTERSKPLASLVTNAMYSRTRVDMYCDGCAQSC
THLHCSEVWRLPRALIILLQRASYGLRGVSITRSPVWFYKYINITRPYRG
DNHGEVCYALRSVVRYAGSASGHRSHYDCILRAPESSVKGIDCVDSSSRW
WHVDDDHITRSSVQSACDTSHLYLLMFEMET*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001394Peptidase_C19_UCH
IPR028889USP_dom
IPR038765Papain-like_cys_pep_sf