Ggra8754.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8754.t1
Unique NameGgra8754.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length88
Homology
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BLAST of Ggra8754.t1 vs. uniprot
Match: A0A2V3IKQ2 (Replication protein A 32 kDa subunit B n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IKQ2_9FLOR)

HSP 1 Score: 127 bits (320), Expect = 1.940e-34
Identity = 66/77 (85.71%), Postives = 69/77 (89.61%), Query Frame = 0 
Query:   11 VRGVVMNDGIVMSVLQRIIYELVKAKKGSPRGVSVEEFAQQATSGTNRSAVKEILDGFASDGYLYTTIDDNQWYVID 87
            V GVVMNDGIVMS LQRIIYE VKA+KGSPRGVSV+E AQQATSGTNRSAVKEILDGFASDGYLYTTIDDN +   D
Sbjct:  207 VSGVVMNDGIVMSPLQRIIYEFVKAQKGSPRGVSVDEVAQQATSGTNRSAVKEILDGFASDGYLYTTIDDNHYAFCD 283
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BLAST of Ggra8754.t1 vs. uniprot
Match: R7QH21 (RPA_C domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QH21_CHOCR)

HSP 1 Score: 52.0 bits (123), Expect = 3.890e-6
Identity = 24/72 (33.33%), Postives = 46/72 (63.89%), Query Frame = 0 
Query:   13 GVVMNDGIVMSVLQRIIYELVKAKKGSPR-GVSVEEFAQQATSGTNRSAVKEILDGFASDGYLYTTIDDNQW 83
            G  + D + ++ +QR  Y+ V+A+      GVSVE+  +  +  +N  +VKE+++  ASDG+++TT+D+N +
Sbjct:  101 GNAVTDSLALNPIQRAAYDYVQARHAPDGPGVSVEDILRDVSGFSNVQSVKEVMEHLASDGHVFTTVDENHY 172
The following BLAST results are available for this feature:
BLAST of Ggra8754.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IKQ21.940e-3485.71Replication protein A 32 kDa subunit B n=1 Tax=Gra... [more]
R7QH213.890e-633.33RPA_C domain-containing protein n=1 Tax=Chondrus c... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014892Replication protein A, C-terminalPFAMPF08784RPA_Ccoord: 4..81
e-value: 3.7E-11
score: 43.6
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 18..87
e-value: 3.8E-13
score: 50.9
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 23..86

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000127_piloncontigtig00000127_pilon:106469..106732 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8754.t1Ggra8754.t1Gracilaria gracilis GNS1m malemRNAtig00000127_pilon 106469..106732 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8754.t1 ID=Ggra8754.t1|Name=Ggra8754.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=88bp
MMAQQQGQAQVRGVVMNDGIVMSVLQRIIYELVKAKKGSPRGVSVEEFAQ
QATSGTNRSAVKEILDGFASDGYLYTTIDDNQWYVID*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014892RPA_C
IPR036388WH-like_DNA-bd_sf
IPR036390WH_DNA-bd_sf