Ggra873.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra873.t1
Unique NameGgra873.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length355
Homology
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BLAST of Ggra873.t1 vs. uniprot
Match: A0A2Z5ZAM9 (Putative capsid protein n=1 Tax=Pythium nunn virus 1 TaxID=2083275 RepID=A0A2Z5ZAM9_9VIRU)

HSP 1 Score: 123 bits (308), Expect = 5.110e-28
Identity = 91/338 (26.92%), Postives = 160/338 (47.34%), Query Frame = 0 
Query:   18 NPNVANARRRHKNRPRVRNQPAPSREENDAV-WAEPSPCIDAAPVPSKMRPVKE--PIGLVSLREDLPDAICESTSAAFRAVGRRFNLSNARIDSCVIALLTQTKLKCAKQLYTTMSDYQKAEVQPLRCVFCDTMPVPKSLMPGIGLIRNQSTRLGDIRIKYPGLLFRRWVMSAL-----RTSRREEVDVGSMVWRDGTSRLYLREYVRIVLEELQAEKHVVQLAGVNDLTLKIPHLAFEPASRDKLTGQTPGQERLRNLVDFGIWLGQPFFEDGEDVVRPVAIGGAGELTVQQMLLDLDLKLCPTTDAEIRRWFTEFVDDYITDYSQQISAVFDTAE 347
            NPN A A+RR  NRP+V+N P+  +   +A  W EP P  +  P+P+ +  + E  P G + L  +LP  +    + +  +V  R +L +A I      L   +  K  +QLY+T+SD QKA +QPL+ ++ D   +P  +   + +I N  +++G I +K+  +LF+RW+++ L      T     V   S+V++D  S+  + E     L+E+  E   +++ G  D+ +  P      A  + +    P  + +R+LV   I +         D VR   +    +L      L L +     +D ++R  F + ++ Y+T     I  VF   E
Sbjct:   24 NPNKAFAQRRQGNRPKVKNTPSGPKTTTEAFRWIEPLP--EVTPMPAVLETITESIPAGSIELNFELPSTVASPFTQSVESVLMRTDLPSASIYQARDKLEALSYYKACRQLYSTLSDPQKAALQPLKAIYYDKSHIPNHMSAALSMIGNLESKMGLIEVKHAPVLFKRWLIAGLCIDPDTTYTAATVAPNSLVFKDVYSKALIDEKANERLKEIHNETFKIKV-GTTDIEVSAPIPPPTDAGYNSIPDDYPHADEMRDLVSI-IQMAT------RDYVRSQPVPHGRDLDTALSHLGLQVAPAGYSDQDLRTAFEDAIETYLTTEIIHIQTVFHLGE 351
The following BLAST results are available for this feature:
BLAST of Ggra873.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2Z5ZAM95.110e-2826.92Putative capsid protein n=1 Tax=Pythium nunn virus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..50

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000212_piloncontigtig00000212_pilon:35610..36674 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra873.t1Ggra873.t1Gracilaria gracilis GNS1m malemRNAtig00000212_pilon 35610..36674 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra873.t1 ID=Ggra873.t1|Name=Ggra873.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=355bp
MDRNQPAHAADAPYPPINPNVANARRRHKNRPRVRNQPAPSREENDAVWA
EPSPCIDAAPVPSKMRPVKEPIGLVSLREDLPDAICESTSAAFRAVGRRF
NLSNARIDSCVIALLTQTKLKCAKQLYTTMSDYQKAEVQPLRCVFCDTMP
VPKSLMPGIGLIRNQSTRLGDIRIKYPGLLFRRWVMSALRTSRREEVDVG
SMVWRDGTSRLYLREYVRIVLEELQAEKHVVQLAGVNDLTLKIPHLAFEP
ASRDKLTGQTPGQERLRNLVDFGIWLGQPFFEDGEDVVRPVAIGGAGELT
VQQMLLDLDLKLCPTTDAEIRRWFTEFVDDYITDYSQQISAVFDTAEATS
LGSG*
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