Ggra869.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra869.t1
Unique Name	Ggra869.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	210

Homology

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BLAST of Ggra869.t1 vs. uniprot
Match: A0A2V3IWZ9 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IWZ9_9FLOR)

HSP 1 Score: 317 bits (812), Expect = 8.130e-108
Identity = 149/209 (71.29%), Postives = 177/209 (84.69%), Query Frame = 0

Query:    1 MDNDAKDVKILEGLSDEQWLAGAAGLVLLLVVLIVNCMYKRRRWRALQEVRSELVSAEFLTLRDLPRHAYQLVADEAQRERNTKVVPAWKQDCGWGAPGSEYDGVHFKTFVGCSLHIIEHYALKRNSSLKACGQP-SGTNDLSSSELACNAHEYLQRIRTHMNGELDKDLCSQYLAFYKQARTPGRECSEQEFRSFLGVLQEILRRIER 208
            MDNDA+ V + E L +EQW AG   L+LL+ VL++NC+ KRRRW+ALQEVRSELVSA+FLTLRDLPRHA+QLVADEAQ ER T+VVPAWK +CGWGAPGS+YDGVHFKTF+G SLHIIEHYAL+R+ SL A G+   G  D+  S+LAC+  EYL+R+  H +GELD DLC+QYLAFY QARTPGRECS+QEFRSFLGVLQEILRR++R
Sbjct:    3 MDNDARGVDVFERLGEEQWAAGVGALMLLVCVLVLNCVVKRRRWKALQEVRSELVSADFLTLRDLPRHAFQLVADEAQSERQTRVVPAWKTECGWGAPGSDYDGVHFKTFIGSSLHIIEHYALRRHRSLSASGRAHGGDGDIRKSQLACDVKEYLERLHAHTDGELDSDLCAQYLAFYTQARTPGRECSQQEFRSFLGVLQEILRRVQR 211

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BLAST of Ggra869.t1 vs. uniprot
Match: M2Y3F7 (Uncharacterized protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y3F7_GALSU)

HSP 1 Score: 96.7 bits (239), Expect = 2.030e-21
Identity = 60/201 (29.85%), Postives = 101/201 (50.25%), Query Frame = 0

Query:   14 LSDEQWLA-----GAAGLVLLLVVLIVNCMYKRRRWRALQEVRSELVSAEFLTLRDLPRHAYQLVADEAQRERNTKVVPAWKQDCGWGAPGSEYDGVHFKTFVGCSLHIIEHYALKRNSSLKACGQPSGTNDLSSSELACNAHEYLQRIRTHMNGELDKDLCSQYLAFYKQARTPGRECSEQEFRSFLGVLQEILRRIERD 209
            LS EQW+       +  +VLLL + + N +    RW+ ++ ++  +  +    L +L + A +L+  EA+RER  +VVP    D GWG+PG+E +GVHFKT +  S  +IE  A  R  SL+              +L      Y+  I+ +    L  + C QY+ FY++A     + +  E+R F+  +  +++ IE D
Sbjct:   10 LSPEQWIIVFVFISSVAVVLLLAIFVRNVL----RWKVIRGLKDGIFYSNRYYLNNLSKSARKLILTEAERERQLRVVPQVAADFGWGSPGTELEGVHFKTSIAKSYKVIEEAAKARIPSLEL-------------KLGKTVSNYISEIQEYF-PTLPTNTCEQYIDFYERACFTKEQFTAAEYRRFVNTVLLLIQHIEHD 192

The following BLAST results are available for this feature:

BLAST of Ggra869.t1 vs. uniprot

BLAST of Ggra869.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3IWZ9	8.130e-108	71.29	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]
M2Y3F7	2.030e-21	29.85	Uncharacterized protein n=1 Tax=Galdieria sulphura...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 20..39
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..19
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 40..209
None	No IPR available	TMHMM	TMhelix		coord: 20..39

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000212_pilon	contig	tig00000212_pilon:18341..19123 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra869.t1	Ggra869.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000212_pilon 18341..19123 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra869.t1 ID=Ggra869.t1|Name=Ggra869.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=210bp
MDNDAKDVKILEGLSDEQWLAGAAGLVLLLVVLIVNCMYKRRRWRALQEV
RSELVSAEFLTLRDLPRHAYQLVADEAQRERNTKVVPAWKQDCGWGAPGS
EYDGVHFKTFVGCSLHIIEHYALKRNSSLKACGQPSGTNDLSSSELACNA
HEYLQRIRTHMNGELDKDLCSQYLAFYKQARTPGRECSEQEFRSFLGVLQ
EILRRIERD*