Ggra8655.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8655.t1
Unique NameGgra8655.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length228
Homology
BLAST of Ggra8655.t1 vs. uniprot
Match: A0A2V3IMD5 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMD5_9FLOR)

HSP 1 Score: 176 bits (447), Expect = 2.020e-49
Identity = 87/196 (44.39%), Postives = 127/196 (64.80%), Query Frame = 0
Query:    1 MTASLVQESIQSMFQSVDDLQNCRIDPTEVCILKGNALETYWNNSIAIDKCHVGNPPQFFNSYETLYDAVEDGRCKYASVRESAIAAAIREKFCGKFVIVGEPILNGGLAKILPLGSDLTEAMSMATLELQKNGTAMTLSKYFSTMPRCQAEVNSTLSFGKLKLFFIFAFSSGAIVFLAMVLVPQQVPKENGSKEA 196
            MTASLVQE I S ++S +D ++C+I P++VC L+G ALE +WN +IA   CH GNP Q+ ++YE +YD +  G+CK++   ES I   IR + CG+ V++ EP+   GL+ ++P GS+LTEAMS AT+ L  +  +  L  +    P+C  +V STL+F KLKLFFI AFS  A +   M+L      K++ +K A
Sbjct:  233 MTASLVQEKITSTYESPEDFRSCKIPPSDVCALRGGALEMFWNTNIATSNCHNGNPIQYLSTYEEIYDGLASGKCKFSICLESVITTQIRTQSCGQLVLLEEPLYTSGLSMVVPKGSNLTEAMSKATMTLLLSQPSSFLESFLRKWPKCTKKVASTLTFRKLKLFFILAFSVCAAILFVMLLGSLYPVKKSANKRA 428          
BLAST of Ggra8655.t1 vs. uniprot
Match: A0A2V3IUK7 (Glutamate receptor ionotropic, NMDA 2C n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUK7_9FLOR)

HSP 1 Score: 157 bits (397), Expect = 7.160e-42
Identity = 80/171 (46.78%), Postives = 116/171 (67.84%), Query Frame = 0
Query:    1 MTASLVQESIQSMFQSVDDLQNCRIDPTEVCILKGNALETYWNNSIAIDKCHVGNPPQ--FFNSYETLYDAVEDGRCKYASVRESAIAAAIREKFCGKFVIVGEPILNGGLAKILPLGSDLTEAMSMATLELQKNGTAMTLSKYFSTMPRCQAEVNSTLSFGKLKLFFIFA 169
            MTA+LVQE++ S +QSV+DL+ CRI P +VC+  G+A+ T+WN++IA   CH  +  +  F  S+E   DAV++G CK+  V +S I  AI  K+CG+ +  GEPI  GGL+ ILP  S+LT+AM +ATL+L+   +A +L +YF TM +C     S L+F KL+L F+FA
Sbjct:  269 MTATLVQETVVSDYQSVEDLKTCRIKPEDVCVPGGSAVLTFWNDAIAYGDCHRESKGKNYFRGSFEETLDAVKNGTCKFGLVLDSTIQEAIHGKYCGQLLSSGEPIYTGGLSMILPKNSNLTKAMRLATLKLRNEASAPSLQQYFQTMSKCAPITGSVLTFEKLQLLFVFA 439          
BLAST of Ggra8655.t1 vs. uniprot
Match: A0A2V3IMD4 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMD4_9FLOR)

HSP 1 Score: 158 bits (399), Expect = 1.160e-41
Identity = 79/184 (42.93%), Postives = 117/184 (63.59%), Query Frame = 0
Query:    1 MTASLVQESIQSMFQSVDDLQNCRIDPTEVCILKGNALETYWNNSIAIDK-CHVGNPPQFFNSYETLYDAVEDGRCKYASVRESAIAAAIREKFCGKFVIVGEPILNGGLAKILPLGSDLTEAMSMATLELQKNGTAMTLSKYFSTMPRCQAEVNSTLSFGKLKLFFIFAFSSGAIVFLAMVLV 183
            MTAS+VQE++ S FQS  D Q CRIDP +VC+ +G + +TYW   +A ++ CH G  P    SYE ++  VE+  C++  + ES + + I  K+CG  +  G PI  GGLA +LP  S  TE MS+ATL++    T  +L +++ST   C AE+ ++L F KL+LFFI AF +G  +FL +V++
Sbjct:  273 MTASIVQETVTSEFQSGKDFQTCRIDPKDVCLPRGGSFDTYWTEVLAKERPCHKGRSPHLMTSYEEVFQGVENRTCRFGILLESTVHSTIHRKYCGTILSNGNPIYTGGLAMVLPKDSMHTEVMSLATLKITDAATVPSLEEFYSTTGSCSAELATSLPFQKLQLFFIIAFCTG-FLFLTVVVI 455          
The following BLAST results are available for this feature:
BLAST of Ggra8655.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IMD52.020e-4944.39Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IUK77.160e-4246.78Glutamate receptor ionotropic, NMDA 2C n=1 Tax=Gra... [more]
A0A2V3IMD41.160e-4142.93Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.190.10coord: 11..107
e-value: 3.1E-8
score: 35.3
NoneNo IPR availableGENE3D3.40.190.10coord: 108..142
e-value: 3.1E-8
score: 35.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 189..227
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 211..227
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 164..183
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 184..227
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..163
NoneNo IPR availableSUPERFAMILY53850Periplasmic binding protein-like IIcoord: 14..146
NoneNo IPR availableTMHMMTMhelixcoord: 164..183

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000855_piloncontigtig00000855_pilon:307997..308879 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8655.t1Ggra8655.t1Gracilaria gracilis GNS1m malemRNAtig00000855_pilon 307997..308879 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8655.t1 ID=Ggra8655.t1|Name=Ggra8655.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=228bp
MTASLVQESIQSMFQSVDDLQNCRIDPTEVCILKGNALETYWNNSIAIDK
CHVGNPPQFFNSYETLYDAVEDGRCKYASVRESAIAAAIREKFCGKFVIV
GEPILNGGLAKILPLGSDLTEAMSMATLELQKNGTAMTLSKYFSTMPRCQ
AEVNSTLSFGKLKLFFIFAFSSGAIVFLAMVLVPQQVPKENGSKEAALPP
EDDPLEPNSGMKDNISCSSTDDSRDQP*
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