Ggra862.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra862.t1
Unique NameGgra862.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length178
Homology
The following BLAST results are available for this feature:
BLAST of Ggra862.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 151..174
e-value: 0.0055
score: 25.9
coord: 91..116
e-value: 0.0075
score: 25.5
coord: 123..146
e-value: 1.0
score: 18.3
IPR013087Zinc finger C2H2-typePFAMPF00096zf-C2H2coord: 91..116
e-value: 0.013
score: 16.0
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 153..174
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 93..116
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 125..146
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 123..151
score: 9.223856
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 151..177
score: 9.535603
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 91..121
score: 10.595541
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 90..116
e-value: 1.4E-5
score: 27.1
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 118..177
e-value: 1.8E-11
score: 45.9
NoneNo IPR availablePFAMPF12874zf-metcoord: 152..171
e-value: 0.019
score: 15.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..83
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..51
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 123..170

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000178_piloncontigtig00000178_pilon:290139..290672 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra862.t1Ggra862.t1Gracilaria gracilis GNS1m malemRNAtig00000178_pilon 290139..290672 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra862.t1 ID=Ggra862.t1|Name=Ggra862.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=178bp
MVENSPTIPSSGHSTGQATYERRNGRSSASSRDQRCSNNDRTPSARNIES
TDDITPAPVGASTSGGAGPSNVPSAPSDNGEPVFVNGRYRYRCSEPGCQS
IYTHPSNLATHVRLKHMGFTPEHQCDACHLKFPFLSVLRVHQREVHGPKQ
HECPVCHKKMTRKLSLDRHMAAVHPEQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf