Ggra8535.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra8535.t1
Unique NameGgra8535.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length755
Homology
BLAST of Ggra8535.t1 vs. uniprot
Match: A0A2V3J4R7 (Homeobox protein Mix.2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4R7_9FLOR)

HSP 1 Score: 593 bits (1528), Expect = 3.440e-199
Identity = 368/693 (53.10%), Postives = 432/693 (62.34%), Query Frame = 0
Query:  110 PSLPSYDRKRKGARIFSAEEKKILELNYAKNKFPSRLHMETLGKALGKGTEKVRTWYNNRRATDRRQGIDVTRNVTDELNASAS------FPNACPVVEETVLLPSHVLAHPTPQSSRSAPVQNHHAHLPATTPLTPDLP-----------------QLPPQSSAYVNVTPSSISWAPSIANTPSNQFSPSPYASNRFRISPLRIRHVCLSIGPEFLFGELPHNLLLDRGLEVKFLFGKKRVVYEWYYGQHYSMAQSTGGPYCKMEMNFSAISSMHLYTSQAMSMLVLYXXXXXXXXXXXXXSMDKYKLRSQQRQYRKVSQIEFPIRPNQPMHAILLRSDEAIRTVKILFEDTPRLLSVFRVYNDKPFPVQLPPSLQNIQQQPSTTPNTNMPMQSTSIALPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------SPSSTFRR-PLSIHELSSRQDGDSLFEAR--QHTSSLNHNSHGMQTRTVPIAVSKAPAVAPAVAPPKTADEAQRARATAVNWLSPSTPYTRASKPWVAARAAAGSYTATPLAERINRGDTPGNGTRVRRELNFNGYGQGDTPMSTLHKRKASALSGKENEERVQVRRRLVH-HGADAGVVRLVAGGIPPPPLPPPLPTFGADGVVTQFAQSAAMVQGEVAMNSERE---RLTQKLPR 754
            P+LP+Y++KRKGARIFSA+EK ILE NYAKNKFPSRLHMETLGKALGKG+EKVRTWYNNRRATDRRQGIDVTRN TD+L  ++S      FP+  P+VEETVLLPSHVLAH  P + +  P        P+ +P  P  P                 + P  +S YVNVTPSSISWAPSIANTP+  FSP+ Y SNRFRISPLRIRHVC+S+   FLFGELPHNL LDRGLEVKFLFGKKRVVYEWYYG  +S+AQ+TGGPYCKMEMNF++I  M L+T   MSML+L              SMDKYKLRSQQRQYR+VS  EFPI  +Q  HAILLRSDEAIRTVKIL EDTPRL SV +V+N KPFP+QLPP LQN+Q   S+  +T +P+Q+  IALPS                XXXXXXX                               +P ST RR PLSIHELSSR D          +   S++   H  +T  +   VSK  A+                   A +W SP+TP+TR S   V +  A GS  A PL ERIN  DTP NGTRVRRELNFNGYG GDT  S+ +KRKA+ + GKEN+ER  VRRR VH +G+    VRL+A GIPP            +    Q     A  +G    ++ ++   RL QKLPR
Sbjct:  114 PALPAYEKKRKGARIFSAQEKDILEANYAKNKFPSRLHMETLGKALGKGSEKVRTWYNNRRATDRRQGIDVTRNATDDLTPTSSSFPSSPFPSPSPLVEETVLLPSHVLAHLQPTNVQPTP--------PSASPNPPTTPXXXXXXXXXXXXXXXDSRFPTATSPYVNVTPSSISWAPSIANTPTTHFSPASYPSNRFRISPLRIRHVCISLASHFLFGELPHNLQLDRGLEVKFLFGKKRVVYEWYYGHDHSLAQTTGGPYCKMEMNFASICDMQLFTRPTMSMLILSFSLMPTLFLQTQQSMDKYKLRSQQRQYRRVSSSEFPIPVHQHNHAILLRSDEAIRTVKILLEDTPRLTSVLQVHNHKPFPIQLPPVLQNVQHLSSSASDTPLPVQTMPIALPSCSAQAVTAAKAQPQQSXXXXXXXALPPHALQKGAATISSMACSTPAGTSRSRTITPCSTVRRRPLSIHELSSRPDATPTDTGANDEQKRSISQVRHYAKTSVMKTTVSKNEALLKQSRSASVKAPNAHTSTPATSWRSPATPFTRTST-LVFSGGARGSCNAKPLTERINHRDTPTNGTRVRRELNFNGYGGGDTTTSSAYKRKANEMGGKENDERAVVRRRTVHVNGSAKANVRLLAAGIPPXXXXXXXXXSRKEEGAVQNGGQHADEKGATCSSAPKDEGGRLLQKLPR 797          
BLAST of Ggra8535.t1 vs. uniprot
Match: R7QAF7 (Homeobox domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QAF7_CHOCR)

HSP 1 Score: 288 bits (738), Expect = 3.630e-83
Identity = 230/643 (35.77%), Postives = 312/643 (48.52%), Query Frame = 0
Query:   66 PLAMRRAPHTGASPLXXXXXXXXXXXSSPLTPNGVRAAPLVAVTPSLPSYDRKRKGARIFSAEEKKILELNYAKNKFPSRLHMETLGKALGKGTEKVRTWYNNRRATDRRQGIDVTRNVTDELNAS--ASFPNACPVVEETVLLPSHVLAHP-TPQSSRSAPVQNHHAHLPATTPLTPDLPQLPPQSSAYVNVTPSSISWAPSIANTPSNQFSPSPYAS-----NRFRISPLRIRHVCLSIGPEFLFGELPHNLLLDRGLEVKFLFGKKRVVYEWYYGQHYSMAQSTGGPYCKMEMNFSAISSMHLYTSQAMSMLVLYXXXXXXXXXXXXXSMDKYKLRSQQRQYRKVSQIEFPIRPNQPMHAILLRSDEAIRTVKILFEDTPRLLSVFRVYNDKPFPVQLPPSLQNIQQQPSTTPNTNMPMQSTSIALPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPSSTFRRPLSIHELSS---RQDGDSLFEARQHTSSLNHNSHGMQTRTVPIAVSKAPAVAPAVAPPKTADEAQRARATAVNWLSPSTPYTRASKP-------WVAARAAAGSYTATPLAERINRGDTPGNGTRVRRELNFNGYG----QGDTPMSTLHKRKA--SALSGKENEERV 684
            PLA+RRA     S             +SPL+                 S   KRKGAR+FSA EK++LE NYA+NKFPSRLHM+T+G+ LGKGTEKVRTWYNNRRA DR+ GIDV+RN  D   A   A FP A P  EE V+LP + +A P TP +       NH        P   +  +   +S+ +VNVTPS+I+WAPS +       + +  AS     NRFRI+PLRIR+  + +G   + GE+  N   DRGLEVKFLFGKKR+VYEWY G+ +  A+ TGGPY KMEMNFS+++++ L+   A+S L L              SMDK+K+R+QQRQYRKV+  EFPIR     H I +R+D+AIR  ++L E+ P L +  + +           SL      PST        + T+  +                                      +P      P  + +LS    + +   +  A   ++S +    G +   +PI           V P      A     +   W SP+TP+  + +P       W        + T TP  ER N    P + T+VRRELNFN       +  TP S   KRKA  + L  K+  +RV
Sbjct:   65 PLAIRRAASLPGSTFTTSSAVITVHEASPLS-----------------SQSDKRKGARVFSAPEKRVLEANYARNKFPSRLHMQTIGRTLGKGTEKVRTWYNNRRALDRKLGIDVSRNPADSPPAPPFALFPTADPS-EEPVVLPGYAIASPGTPSAC------NHAGKGEKDVPSPNNTVKGLFESTIFVNVTPSAIAWAPSASPVTGRPCAGAAPASLQPQPNRFRITPLRIRNSRVVMGSSEICGEIGDNPSADRGLEVKFLFGKKRIVYEWYCGEDFVQAKKTGGPYAKMEMNFSSVANIQLFRGGAVSALQLSFSEVPTTYLQTQESMDKFKVRAQQRQYRKVTADEFPIRVCVEQHRISMRTDDAIRVARVLIEENPHLAASSKAWEKDC-------SLAVRVANPST--------EVTAFKIEKGSGSPTVDPVLVNTPQLEHVNISRLNICKR------TPGEAMASPGVVGQLSQPFEQCNTPMVRSAEMVSASPSTQKDGKRESELPI-----------VRPITATGAASNLLGSPAPWPSPATPFIPSGRPRGRDIMQWSTGVVPLCAST-TPFRERTNIPSAPRDTTKVRRELNFNALHHMPTEPRTPASKGRKRKAEEAKLDDKDLHQRV 650          
BLAST of Ggra8535.t1 vs. uniprot
Match: A0A5J4Z9W5 (Homeobox domain-containing protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z9W5_PORPP)

HSP 1 Score: 65.9 bits (159), Expect = 1.800e-7
Identity = 78/306 (25.49%), Postives = 133/306 (43.46%), Query Frame = 0
Query:  119 RKGARIFSAEEKKILELNYAKNKFPSRLHMETLGKALGKGTEKVRTWYNNRRATD---RRQGI--DVTRNVTDELNASASFPNACPVVEETVLLPSHVLAHPTPQSSRSAPVQNHHAHLPATTPLTPDLPQLP----PQSSAYVNVTPSSISWAPSIANTPSNQFSPSPYASNRFRISPLRIRHVCLSIGPEFLFGELPHNLLLDRG--LEVKFLFGKKRVVYEWYYGQHYSMAQSTGGPYCKMEMNFSAISSMHLYTSQAMSMLVL---YXXXXXXXXXXXXXSMDKYKLRSQQRQYRKVSQIEF 410
            +KG+  FS  E + +   +    +P +  +E+L  + GK   KVRTW+NNRRA     RRQ    D T + T   +   S P+    +E T        + P    S SA V+   A+             LP     Q+ ++V+   S++  + S+    + +      AS+    + L +    L+IG ++    L           LE+KFLFG++++ YE + G   + A   GGPY  +++ FS+I S   +   A+  + L                 + ++YK R++QR Y K +  +F
Sbjct:   48 KKGSSEFSPSELEGMARLFEACPYPKKDELESLAASFGKPLRKVRTWFNNRRAKQVRMRRQAASPDSTGSDTPRSDVGDS-PSRHATLESTAKRQD---SFPLRSGSPSANVKTSEANSHRFQAQKNSASSLPLDTASQNESHVHDAASAVPPSESLRKRKAWRIDEQSSASSSKTPAALSLHRTKLAIGSKWACESLVQTFADKEWSTLEIKFLFGRRKLRYELFLGDDLASAMQKGGPYGAIDIKFSSIDSFS-FEEDALHYVYLNLVVNPRELEYLLQPQSNFEEYKNRTKQRLYEKENAGDF 348          
The following BLAST results are available for this feature:
BLAST of Ggra8535.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3J4R73.440e-19953.10Homeobox protein Mix.2 n=1 Tax=Gracilariopsis chor... [more]
R7QAF73.630e-8335.77Homeobox domain-containing protein n=1 Tax=Chondru... [more]
A0A5J4Z9W51.800e-725.49Homeobox domain-containing protein n=1 Tax=Porphyr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 118..180
e-value: 4.4E-9
score: 46.2
IPR001356Homeobox domainPFAMPF00046Homeodomaincoord: 123..175
e-value: 5.6E-8
score: 32.5
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 116..176
score: 12.989054
IPR001356Homeobox domainCDDcd00086homeodomaincoord: 117..176
e-value: 1.22952E-8
score: 49.9345
NoneNo IPR availableGENE3D1.10.10.60coord: 117..178
e-value: 2.3E-10
score: 42.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 522..557
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..95
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..93
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..69
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 522..536
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 214..249
NoneNo IPR availablePANTHERPTHR48125:SF4LP07818P1coord: 14..620
NoneNo IPR availablePANTHERPTHR48125LP07818P1coord: 14..620
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 22..39
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..39
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 40..362
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 385..754
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 363..384
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 110..176

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000191_piloncontigtig00000191_pilon:123026..125290 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8535.t1Ggra8535.t1Gracilaria gracilis GNS1m malemRNAtig00000191_pilon 123026..125290 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra8535.t1 ID=Ggra8535.t1|Name=Ggra8535.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=755bp
MAADDGAMHSLLAAVAVAAASAPPPLHQPPTRASSGARAAARDRAVAPPP
PPPLPPPLPPPPPLPPLAMRRAPHTGASPLPASPPPVAPPCSSPLTPNGV
RAAPLVAVTPSLPSYDRKRKGARIFSAEEKKILELNYAKNKFPSRLHMET
LGKALGKGTEKVRTWYNNRRATDRRQGIDVTRNVTDELNASASFPNACPV
VEETVLLPSHVLAHPTPQSSRSAPVQNHHAHLPATTPLTPDLPQLPPQSS
AYVNVTPSSISWAPSIANTPSNQFSPSPYASNRFRISPLRIRHVCLSIGP
EFLFGELPHNLLLDRGLEVKFLFGKKRVVYEWYYGQHYSMAQSTGGPYCK
MEMNFSAISSMHLYTSQAMSMLVLYFSAVPALFLQTQQSMDKYKLRSQQR
QYRKVSQIEFPIRPNQPMHAILLRSDEAIRTVKILFEDTPRLLSVFRVYN
DKPFPVQLPPSLQNIQQQPSTTPNTNMPMQSTSIALPSSLPQTATAATVP
ARTCASDAAVPHPVPTAVHQASLQSPSSTFRRPLSIHELSSRQDGDSLFE
ARQHTSSLNHNSHGMQTRTVPIAVSKAPAVAPAVAPPKTADEAQRARATA
VNWLSPSTPYTRASKPWVAARAAAGSYTATPLAERINRGDTPGNGTRVRR
ELNFNGYGQGDTPMSTLHKRKASALSGKENEERVQVRRRLVHHGADAGVV
RLVAGGIPPPPLPPPLPTFGADGVVTQFAQSAAMVQGEVAMNSERERLTQ
KLPR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001356Homeobox_dom
IPR009057Homeobox-like_sf